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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0111500 |
| Transcript ID | LotjaGi1g1v0111500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT2G30260.1 U2 small nuclear ribonucleoprotein B; Swiss-Prot: sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B''; TrEMBL-Plants: tr|A0A1J7HLK6|A0A1J7HLK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0111500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17394428..17398471) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACCTAACTAGTTTATGTATAACATAGAGTTAGGCCCATTTCACCCTAAGGTAGTGTGTATTTAGGTTATTGAATA TAGCCCAAGCCCACATTGTAAAATTTGAATTTCAATGAAAAGCCCGAACCAGAATCACTTCCCCTGAAACATTCCTCATT ACCAAAATACCACCGAGCTCTGAACTAGGGCTCTTCCACCGCTCCACCACAAATTGAAACCGACGATGCTTTCAGGTGAC ATACCTCCGAGCCAAACCATTTACATCAAGAATCTCAACGAGAAGGTCAAGAAAGACGGTAACTTTCCTTCACACCCATG TTGTTTTCCACTGTCTTCTACATCAATTTTGCATTCACAACTGTTTACTGGTTTCATTCTGATTCTGGAACTTGCAGAGA TTGCATTGATGTTTGTTAAGTTTTTTTTGAGTGATTTTGTGGTGTAATTGCCAGTTTCTACGAATTTCAACTAGGTTTGA GTGTTTTTTTGCTGAATTTGGTTAAGTGTGGATTTGGTTCAGGAATAGGAGCTGTTTTATTGTGTTACTTATTCTGAAAT TTTGTTGATTTTTTTGTTTAGTTGAAGTGGGCTTGTGTGAATTTGATGATATGGATCTTAGTTTTGATGTAACTAGAAAT ATGTAGTGGCTTTGCTTGATTTTGCATTTTAGGTATTTTAATTGGATATACTCTTTGCTGATTTTGTTGATATAACTCAG GGGCTATTGTTTTGTATGTTGATCCTATGGCAGAATTTAACATTATATTTTCTGTTTTTTTTGTTAATGTGGTAGAGTTG AAGAGGTCTCTCTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACGTTGTTGCTCTAAAGACACCCAAGCTTCGAGG ACAGGCATGGGTTTGTTTCAGTGAAGTCCCTTCTGCTAGTAACGCAGTGCGACAAATGCAAAACTTCCCGTTTTATGAAA AACCTATGGTAATCATGTTATAGTGCTGTTAGTAATTTATTTACGGTTATCTTATAAATATGTTTTCTTTTATTCCTATT TTATGTAACCTTTTCCGTTTGCCTGCTCAAGTTTTCTTGCTGTATTTGATCACGAGTCTTGTAGTTTGTCCTAATTATCT ATTGACAATCTTGGATTCATGTTTGTGCCTACAAGACCTGGGTCTGATAACTTCTGTTTAAATATTTTGTTTTAATTTAT TTGATCCAAACACCTATTGTCCTGTAGGCACTATGTTCATTATCATGATTCACCAATGAGACTGAGAGATGTGGATTATT GATAATTTGATTTTTCTATCTTTTCATCAATGAGATGATTCTAAAAGCTTTTGTGTAATTAATTTGATGATGCAGCGAAT TCAGTATGCTAAAACAAAGTCAGATTGTATTGCTAAAGAAGAAGGAAGCTATGTTCCAAGGGAAAAGAAAAAGAAGCAAG AGGAAAAAGGTGAACAATATTGATCTATTAATACATTTCAAACCATATTCTTACTCATTTATTGAATTTTATTTTAGAGT TCTTGCATGTTGTTTGTAGTACTATGTACCATTATCATCATCAGTCCCTTTAAAGTGGTCGGTTTTAAATGGCTGAGCCA TCATATATAATAGGATTGTGGCACTTCAATACTGATCATTAGAACCAGGCAGCAGTATCCACATTGCAGTTGTAAAGAAT AATAATTGAGTTTATTTAATACTCCCTCTGTCCCTGATTATAAGCCCCTCTTCAGACAATTAGCATATTAAGAAAACATG TAATGAGGCTAATTCATGTATTGGTTTAAAAAACAGTGTACAATCTTCTACATTTACCCTTAACCTTAATTAATGTATTG AGTGCGTGGAAAAGAATTAATTACTAGTGGTAACCAAAACTATGGAATTACAAAAGTATAATAAATACAAGGGGGGATAT ATTGAAAATGATAATAGTTTTTTATGAAATTTAGTAGGGCTCCTATATTCAGGGACACCAAATATGTCTCTAAAAGGTCT TATAATTAGGGATGGAGGGAGAATGTCATTACACAGCACTCTTTTTCTGTATGGAAATTTTAAAATATGGTAAAAGGTGA TAGAAGAATGTTCAGGAAAGTTGAAAATGTTCTTTAAAACTAGTGCATTACGGTTTTAATGCAATGGTCCTTTGGTGGTA TTATTCTTGAGTGCAGTTGATATAGATTTTTGGGGAAGCAATGCTTCCCTGGCCTGGGAATTTGACCAAACCTATTATCC TCTAATTTCCTTAGCCTAGATATAGTATAATTGAAATTTACTGTTGTAAGGACATTGTTTATTGTGAAGTAAACCTTCTA GTAATGGATTATGTCATGTTTTTTAATTTCCCCTTGCTCCCCTGCTAACCATCCCATGAACGTGCTAGTTTTTCAGAGTA AATAAGTTACTATTGTTATTGCCCATGTTAAGCATTTGTAAATGAACAATATCAAAATTTCAACATGTGGACATTATTTT TGCTAAGCTGTAGAGACTAGAGAGTTTAAGGATGTTTCCATTATCACTCTGTGATTTCTTGAACAAGAATCAATATTAGT TCCTTTGTTAAATTGGCAATAATTTCTTATTGTTTGAATTTAAATTTGATTAACATGACTTCACCTGTTCAGCTGAAAGA AAGAGACGTGAAGAAACACAGCAACCTGCTCCGGCTAATGGAACACATGGTGCAAGTAATGGTGGCCCAACTGTAAGTTC CTCTAATCTTTGTTGCTTATAGCCTGATTTTCTCGTATTAAAATTTTGGCTGTGGATTCTAAGGAATTTATTGATGCTAA TATAGCAATTTCTTCCCTCCTCTCTTAACAAAATTGGACCATCTGTTCAATTTTTGCATCTCAGTCTCTTGGGCATGAAA GAAACAAGCAAAAGGATGATGGCTGTTAGAAGTATAATAATTAAACCATTATTCTGTCTTCACACAATAGCTTAAGCTTT TGAGGTTGTTGGTTTCTAACATTGTGTCAGAGCCTCTAAGATGAAGTGGTCTAGAATTCGATCCTAGCTTACCTGATTCT TCTAATTTAAAGTTGAATATCAGCATAATGTAGGTAGGCTTGTGCAATACCACGCGTCAAAGCCCAAAGGGCTCTTGCCC ATAGTGTTGTGTTACAAATATAAAATAAAATTATTCATTTATCTTCACCCAGTAGGTGAAGTCCTAGGGATGTAATTGGT TCATGAAATGTTTTGTTTAATTTCACTTTAGCAGTTCTGTGGATATGGTTTATCTAGTAGTATGATATTACTTGCATAAG CATATGACATGTACTATTATTATCTGCAGGCCTCCTTCCGTCCAGGAGTCGGTGCCCAAGAAGCAGCTGCTCCTAACAAT ATTTTGTTCATTGAGAATTTGCCTTATGAAACTACCGGTAGGATGCTTGAAATGCTATTCGAGCAGTACCCAGGTTTTAA GGAAGTGCGCTTGATTGAAGCAAAGCCGGGTATTGCATTCGTAGATTTTGAAGATGAGGTGCAATCTTCCATGGCCATGC AGGCCCTTCAGGGCTTCAAAATCACCCCTCAGAATCCTATGATTATAACCTTTGCTAAGAAGTAGCCAATTGATTTTTAG TAGTGAGTAATTTTCCAAATCTGGTCTGTATTTGCGGGAAGGGTTACTTGAAGAGATTTTCTCATATTGTACTACTGCTG TAGATCTTTAGAAGAACTAATTCTTAAGTTGTAAGATTACACTTTACAGGAAGTTGAAACAAGCAGACGCTGAGCATTTG ATCACATTTGTGGGAAGATTAAAATAGTGTTGGTATACTGTCTGTCTATTCTTTGTATGTTTATTTGAACGATCTTGAGA GAACATTTACTAGTTTGGTTTTGCGTTGGCGTCTTCAAATCCTAGTTTTTTGACAGGTTCGATACAATTCCTTCTGTCGA AGTCAAAGTCCTTTCTTATTATTGGCAATAAGAATTATGCTTTCAATTGTGTTTCACAGCAGTATGTATAGAGGGGAACC TATCATGCGCTCACTTGGTTTAAATAGTATTGATTTTTGTAGGC
CDS sequence (LotjaGi1g1v0111500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCAGGTGACATACCTCCGAGCCAAACCATTTACATCAAGAATCTCAACGAGAAGGTCAAGAAAGACGAGTTGAA GAGGTCTCTCTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACGTTGTTGCTCTAAAGACACCCAAGCTTCGAGGAC AGGCATGGGTTTGTTTCAGTGAAGTCCCTTCTGCTAGTAACGCAGTGCGACAAATGCAAAACTTCCCGTTTTATGAAAAA CCTATGCGAATTCAGTATGCTAAAACAAAGTCAGATTGTATTGCTAAAGAAGAAGGAAGCTATGTTCCAAGGGAAAAGAA AAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGAGACGTGAAGAAACACAGCAACCTGCTCCGGCTAATGGAACACATGGTG CAAGTAATGGTGGCCCAACTGCCTCCTTCCGTCCAGGAGTCGGTGCCCAAGAAGCAGCTGCTCCTAACAATATTTTGTTC ATTGAGAATTTGCCTTATGAAACTACCGGTAGGATGCTTGAAATGCTATTCGAGCAGTACCCAGGTTTTAAGGAAGTGCG CTTGATTGAAGCAAAGCCGGGTATTGCATTCGTAGATTTTGAAGATGAGGTGCAATCTTCCATGGCCATGCAGGCCCTTC AGGGCTTCAAAATCACCCCTCAGAATCCTATGATTATAACCTTTGCTAAGAAGTAG
Protein sequence (LotjaGi1g1v0111500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSGDIPPSQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVPSASNAVRQMQNFPFYEK PMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRREETQQPAPANGTHGASNGGPTASFRPGVGAQEAAAPNNILF IENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 231 | 229 | 1.3E-99 | – | |
| PANTHER | 3 | 231 | 229 | 1.3E-99 | – | |
| Gene3D | 4 | 120 | 117 | 2.5E-29 | ||
| SUPERFAMILY | 8 | 220 | 213 | 2.04E-27 | ||
| ProSiteProfiles | 10 | 89 | 80 | 13.959 | ||
| SMART | 11 | 85 | 75 | 2.2E-12 | ||
| CDD | 11 | 88 | 78 | 4.03897E-51 | – | |
| Pfam | 12 | 82 | 71 | 4.6E-8 | ||
| MobiDBLite | 97 | 147 | 51 | - | – | |
| MobiDBLite | 97 | 123 | 27 | - | – | |
| Coils | 104 | 124 | 21 | - | – | |
| MobiDBLite | 124 | 138 | 15 | - | – | |
| Gene3D | 149 | 231 | 83 | 4.2E-22 | ||
| CDD | 155 | 227 | 73 | 5.34505E-38 | – | |
| ProSiteProfiles | 157 | 231 | 75 | 13.532 | ||
| SMART | 158 | 227 | 70 | 6.0E-12 | ||
| Pfam | 159 | 218 | 60 | 2.3E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0111500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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