Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0112500 |
| Transcript ID | LotjaGi1g1v0112500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exocyst complex component, putative; TAIR: AT5G58430.1 exocyst subunit exo70 family protein B1; Swiss-Prot: sp|Q9FGH9|E70B1_ARATH Exocyst complex component EXO70B1; TrEMBL-Plants: tr|A0A0B2QH88|A0A0B2QH88_GLYSO Exocyst complex component 7; Found in the gene: LotjaGi1g1v0112500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17614911..17617136) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATCCTTAATCAAAAAATGTGGTTCTTTGAGAAAGCAATGCTCATCCACTTCAGAGAAAAGATGATACCCATTCTCA TTCAAACTCAGTTGGCTAATACAACCAAAAGTATGGAGATTTTTGGGTTTGGCTTCATCAGCTGTTGGACTGTTTTGTTA TGCTCTAAGTTCTTCCTTCAGCCACCTATTTGGACATTGGACATTCTTCAAGATACTTCTGTACATCATTTTCAGCCTTA TGATCTTCTTCATAATTTTTTTTGCAAATACATGGCAACACACAAGAAGTCACAGGTTCAAAGCTCACTCAGCCTTTCTA GTTTTGACCATCACCACAGTCTATTCTTTTTTCTCAGATAAAGTAATGAATAGTGGGAAGCCAGATGCATATAGTTTGAT TTCATGTGCTTCCTTTGCTATCATGTCACTCAGCTTGTCAAGGCAAACTCAGTGTGGATTTGAAATTGATCTTATGTATT TTTTCCTGGGATGTTTGATATTGCAATTCATGAAAATTAAATTGCAGTTAGCTTTTATTGGAGTAGGTTTCAGCTATACT CTAATTATTCTTCGTTCTTCAATTTCCTCAGTGGCCAAGGAAGAAAATGACTTCCCTGCACTCCAAGATGAACATGTTAT GATTCAGGTAGATTCTTCCCAGGTGAATTTTGATAATTGTAGCATCACACAGCAACGGCTGCTGAACTGTATGAATGAGC TTCACCAAAACAATTCAAACCTCGCTCACATCCTTTTGAAGCGGGTGAAGGATAACACCGAATTGGCGGTGACAGACCAC AATTTTATCATGGATGCACTGCCGCCGGAGATGATCACCAACCTTCATGAAACCGCCAAGTTGATGGTGGATGCTGGGTT GGAGAAGGAGTTCTCCGAAGCCTACTGCAGTTGGTGGAGGGAATTCTTAGAAGAGTGTCTGATAAACAAAGTATTAGGGT TGAGAAAGATAGGGTTTCAAGATTACATGATTGGAAGATGGATCAAGGTTTCTAAAGTAGCTCTGAGGATACTTTTCCCC GGTGGGCGGAGACTCTGCGAGAGAGTGTTTTCTGGATTCTCCTCCTCTGCCGCCGCCTCTGATCTTTGCATCTTGGAGGT TTGTGGGGGAGCAATGATTCAGCTGCTGAATTTCGCCGATGCTTTTATAAACAGGAGCCCTTCAGCTTGGCGATTGTTTA AGATCCTGGACATGTTTCAGACGCTGCAAGGCCTAATTCCAGAGATTCAATCGATGTTTCCTGACTCGTTGGTGAATGAA ACAATGAGAATCCAGAAGAGATTGGGAGAAGCAAGCAGAGACATTTTCATGGAATTCGGGAATCTGATTTTTGATATTCC TGATGCAGGGTTAGATGCTTTGGCTGATGGCGGGGTTCATCGGATGACCACCGGAGTCATGGGCTACATTATTCCTGCTT TTTGGTCTAGGCAAATCCTAGAGAAAATTTTAGGGGAATTTCCCAAATTTGCTGCTGATGGAGAAGAAACATCTTCATTC TCTACGCAGATGGAGCGGATAATGGAGCAATTGGAGAGAAAATTGGAAGAGAAGTCCAGAATTTACACAGATCCTGCTTT GCCGTACTTTTTCATGATGAATAATTTGAGGTGCATTGATGGCCTATTGGGAACCTTTGGGGATGATAGGTTCCAAAAGA AGACACAGCATAACTTTGAACTCTATTATAGAAGCTCTTGGAGTAAGGTGTTGGAATTTTTGAAGCCGGATAATAGTGAA TCACCGGAGCCTAATGTTGCAGCAGAGTCATTGAAAGAAAAGCTCAATCTGTTCTATCTACATTTTAGGGAGACTTGCGG TGTTCAATCGACATGGTGTGTCTGTGATAAGCAACTGTTGAAACAAATAATAGAATCTGTTGAAAACATGGTGTTGCCTG CCTATGAGAATTTCATACAGAGGTTTAAGGATGTTCTTGGTGAGCATAGTGATGAGTATGTTGAGTATGGAATATCTGAC GTTCAAGGTATGCTGAACTCAACTATTCGTTTCTCGGAATCATGTTGATGAATCAGCAACAGCTTAATGAGAAGGAAAAG ACCGAAAAGGCTAGGTTGTCTCTTGTGTGAAATCTGAAATAGGAATTACAAAATTTTCATTATCACAAACATTATTGTAA AGGATTTGTGGCCATGTCTTGCACATCAATGTATGTTTTCTACTTGGAAGCATAAAGATATTTTTC
CDS sequence (LotjaGi1g1v0112500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGGTAGATTCTTCCCAGGTGAATTTTGATAATTGTAGCATCACACAGCAACGGCTGCTGAACTGTATGAATGA GCTTCACCAAAACAATTCAAACCTCGCTCACATCCTTTTGAAGCGGGTGAAGGATAACACCGAATTGGCGGTGACAGACC ACAATTTTATCATGGATGCACTGCCGCCGGAGATGATCACCAACCTTCATGAAACCGCCAAGTTGATGGTGGATGCTGGG TTGGAGAAGGAGTTCTCCGAAGCCTACTGCAGTTGGTGGAGGGAATTCTTAGAAGAGTGTCTGATAAACAAAGTATTAGG GTTGAGAAAGATAGGGTTTCAAGATTACATGATTGGAAGATGGATCAAGGTTTCTAAAGTAGCTCTGAGGATACTTTTCC CCGGTGGGCGGAGACTCTGCGAGAGAGTGTTTTCTGGATTCTCCTCCTCTGCCGCCGCCTCTGATCTTTGCATCTTGGAG GTTTGTGGGGGAGCAATGATTCAGCTGCTGAATTTCGCCGATGCTTTTATAAACAGGAGCCCTTCAGCTTGGCGATTGTT TAAGATCCTGGACATGTTTCAGACGCTGCAAGGCCTAATTCCAGAGATTCAATCGATGTTTCCTGACTCGTTGGTGAATG AAACAATGAGAATCCAGAAGAGATTGGGAGAAGCAAGCAGAGACATTTTCATGGAATTCGGGAATCTGATTTTTGATATT CCTGATGCAGGGTTAGATGCTTTGGCTGATGGCGGGGTTCATCGGATGACCACCGGAGTCATGGGCTACATTATTCCTGC TTTTTGGTCTAGGCAAATCCTAGAGAAAATTTTAGGGGAATTTCCCAAATTTGCTGCTGATGGAGAAGAAACATCTTCAT TCTCTACGCAGATGGAGCGGATAATGGAGCAATTGGAGAGAAAATTGGAAGAGAAGTCCAGAATTTACACAGATCCTGCT TTGCCGTACTTTTTCATGATGAATAATTTGAGGTGCATTGATGGCCTATTGGGAACCTTTGGGGATGATAGGTTCCAAAA GAAGACACAGCATAACTTTGAACTCTATTATAGAAGCTCTTGGAGTAAGGTGTTGGAATTTTTGAAGCCGGATAATAGTG AATCACCGGAGCCTAATGTTGCAGCAGAGTCATTGAAAGAAAAGCTCAATCTGTTCTATCTACATTTTAGGGAGACTTGC GGTGTTCAATCGACATGGTGTGTCTGTGATAAGCAACTGTTGAAACAAATAATAGAATCTGTTGAAAACATGGTGTTGCC TGCCTATGAGAATTTCATACAGAGGTTTAAGGATGTTCTTGGTGAGCATAGTGATGAGTATGTTGAGTATGGAATATCTG ACGTTCAAGGTATGCTGAACTCAACTATTCGTTTCTCGGAATCATGTTGA
Protein sequence (LotjaGi1g1v0112500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQVDSSQVNFDNCSITQQRLLNCMNELHQNNSNLAHILLKRVKDNTELAVTDHNFIMDALPPEMITNLHETAKLMVDAG LEKEFSEAYCSWWREFLEECLINKVLGLRKIGFQDYMIGRWIKVSKVALRILFPGGRRLCERVFSGFSSSAAASDLCILE VCGGAMIQLLNFADAFINRSPSAWRLFKILDMFQTLQGLIPEIQSMFPDSLVNETMRIQKRLGEASRDIFMEFGNLIFDI PDAGLDALADGGVHRMTTGVMGYIIPAFWSRQILEKILGEFPKFAADGEETSSFSTQMERIMEQLERKLEEKSRIYTDPA LPYFFMMNNLRCIDGLLGTFGDDRFQKKTQHNFELYYRSSWSKVLEFLKPDNSESPEPNVAAESLKEKLNLFYLHFRETC GVQSTWCVCDKQLLKQIIESVENMVLPAYENFIQRFKDVLGEHSDEYVEYGISDVQGMLNSTIRFSESC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 463 | 461 | 5.6E-108 | – | |
| SUPERFAMILY | 19 | 461 | 443 | 3.4E-76 | ||
| PANTHER | 22 | 460 | 439 | 5.6E-148 | – | |
| PANTHER | 22 | 460 | 439 | 5.6E-148 | ||
| Pfam | 120 | 460 | 341 | 2.1E-69 | ||
| Coils | 295 | 315 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exocyst | A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. | ||
| Biological process | Exocytosis | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. |
Expression pattern of LotjaGi1g1v0112500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…