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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0114500 |
| Transcript ID | LotjaGi1g1v0114500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor cwc22, putative; TAIR: AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog; TrEMBL-Plants: tr|V4UB47|V4UB47_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0114500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18030580..18032755) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTCCACCCGTATCTGTGTCACACTCTGTTTCTACATTCTTTCCATTCAATCGGATTAGGGTTTGCTTTAGAATCTC CATGGCGCTCAGCATGGAATCCCGTCGAAGGTACGACGAGGATAACCGCAAGCGTGGCCGGCGGAGAGAGGAGGAGGACC GTCGCAGACGCAACGACCGCCGGGACAGTGGGGAAGAGATGGACAATGTTGAAAAATTAGAGCGCAAGAGAGGTCTACTA AATCACAATGGACGCAGGGAACCCCGTCTAAGGTACGCCGACGAGCGAGACCGAAGGCGAGCCGATGAAGATAATGTGAA GAGAGTTGTCTTGCAGCTCAAGAAAGCTTATAAAAGGAATGACAAGGTATTTGATGTGTTTATTTGATTTGATGTCCGTT TCCTAGAATCAATTAATGTTATTGCTGCTTTTAACTGTGTTTTTTTCATTCGTTTGTAGCCTCAATTGCTAGCTTCTGTT AAATTTGTTGCTGATTTGGTGAATCAGCAAGTGGCTCATGAGACCATTGCTCTAGAATTGCTTACCGTGTTGCTCGAGAA GCCTACTGATGAGGCTGTTGAAGTAGCCGTTGGCTTTGTCAAGGAATACGGTTCGATACTGCAGGGTCTCTCGCCTAAAG GCCTTCATGGTATCTTTGAGCGTTTTCGCGGAATTCTTCGTGAAGGAGAGATTGGCAAACGCGGCCAATTTCTCATTGAA GGCTTATTTGCAATAAGGAAAGCTAAGTTCCAAGGCTATCCGGCGGTTCAATCTGAACTAGACGTTGTGGACATAGATCC AGAAATTTCCCTTGATGTATTCAAAGCTGATCCCAATTATCTAGAGAATGAGAAGCGTTATCAAGAGTTAAAGAATTCAA TTCTGGGTGAGGAGGAAGGATCTGAGGATGAGGAAGGCTCTAATGCTGATGAAGATGATGAATCAGAGGTCATAGATCCA GAAACTTCCCTTGATATATTCAAAGCTGATCCCAATTATCTAGAGAACGAGAAGCGTTATCAAGAGTTAAAGAAAACAGT TCTGGGTGAGGAAGAAGGATCTAATGCTGATGAAGATGATGAATCAGGTGAAGAAAGTATGCAAATTAAAGATGAAACGG AGACGAATCTGGTCGATCTACGCAGGACAATTTATTTAACAATAATGTCTAGTGTGAATTTAGATGGAGCTGGTCATAAG CTCCTTAAAATCCATCTAGAGTCTGGTCAAGAGATGGAATTGTGCATCATGCTTTTGGAATGTTGCAGCCAAGAGAGAAT TTACCTACACAATTATGGTCTTCTTGGGCAGCGTTTATGTATGATCAGCAAAGTGCATCAAGAAAATTTTGAGAAGTGCT TTGTGCAGCAGTACTCAATGACTCATCGACTTGAAACAAATAAACTGCGAAATGTGGCCAAGTTTTTTGCTCATTTGCTT GGCACAGATACTCTACCTTGGCATGTGTTATCCTATATTCGCTTGACTGAAGAAGACACAACTTCTTCGTCGCGTATATT TATCAAGATACTCTTTCAGGAATTATCAGAGCATCTTGGCATCAAGGTGCTAAATGAAAGGTTGAATGAGCCAACAATGC AGGACTCTTTTGAATCCATATTTCCTAAAGATAACCTGAAAAACACAAGATTCTGCATTAACTTCTTCACATCAATTGGG CTTGGTGGTCTTACTGAGAACCTCCGTGAGTATTTGAATAATATGCCGCGCCTTATCAAGCAGCAGAAGAAACAAGTTTC AGATTCTGAATCAGAGGATGAGTCTGGGAGTTTTGATTCATCGGATTCCAGAACAGATAGTTCTGAGTCAGAGTCAGAAA GTGATCGTGTGCAACAAAGAAAACGGAGGAGAAAGTAGAGAATGTTTTTAGTCTTCAGGGCTCTTTCTGGAGTGTAGGTA TTCAATTGCTTTCTTAGTAAGCTTAGTGATTTTGATGTCATCATAAGAAACATTTGCACAGAACTATGTTGATTAATGGC TTATTCTTGGAGTTATCTTTTATTTCATTTCCACTTATTTCTAATTCTCTTTTCTCTTCTTTTTTATCGTATTAGTACAT CATATCTTTCATTTTTCTATTTTCTCTTCCTATTCCATGATGTGGAAGTGGTTTTAAAGTGGGTATGAAACTTTATTCCT TATTCTTGTAATTGGA
CDS sequence (LotjaGi1g1v0114500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTCAGCATGGAATCCCGTCGAAGGTACGACGAGGATAACCGCAAGCGTGGCCGGCGGAGAGAGGAGGAGGACCG TCGCAGACGCAACGACCGCCGGGACAGTGGGGAAGAGATGGACAATGTTGAAAAATTAGAGCGCAAGAGAGGTCTACTAA ATCACAATGGACGCAGGGAACCCCGTCTAAGGTACGCCGACGAGCGAGACCGAAGGCGAGCCGATGAAGATAATGTGAAG AGAGTTGTCTTGCAGCTCAAGAAAGCTTATAAAAGGAATGACAAGCCTCAATTGCTAGCTTCTGTTAAATTTGTTGCTGA TTTGGTGAATCAGCAAGTGGCTCATGAGACCATTGCTCTAGAATTGCTTACCGTGTTGCTCGAGAAGCCTACTGATGAGG CTGTTGAAGTAGCCGTTGGCTTTGTCAAGGAATACGGTTCGATACTGCAGGGTCTCTCGCCTAAAGGCCTTCATGGTATC TTTGAGCGTTTTCGCGGAATTCTTCGTGAAGGAGAGATTGGCAAACGCGGCCAATTTCTCATTGAAGGCTTATTTGCAAT AAGGAAAGCTAAGTTCCAAGGCTATCCGGCGGTTCAATCTGAACTAGACGTTGTGGACATAGATCCAGAAATTTCCCTTG ATGTATTCAAAGCTGATCCCAATTATCTAGAGAATGAGAAGCGTTATCAAGAGTTAAAGAATTCAATTCTGGGTGAGGAG GAAGGATCTGAGGATGAGGAAGGCTCTAATGCTGATGAAGATGATGAATCAGAGGTCATAGATCCAGAAACTTCCCTTGA TATATTCAAAGCTGATCCCAATTATCTAGAGAACGAGAAGCGTTATCAAGAGTTAAAGAAAACAGTTCTGGGTGAGGAAG AAGGATCTAATGCTGATGAAGATGATGAATCAGGTGAAGAAAGTATGCAAATTAAAGATGAAACGGAGACGAATCTGGTC GATCTACGCAGGACAATTTATTTAACAATAATGTCTAGTGTGAATTTAGATGGAGCTGGTCATAAGCTCCTTAAAATCCA TCTAGAGTCTGGTCAAGAGATGGAATTGTGCATCATGCTTTTGGAATGTTGCAGCCAAGAGAGAATTTACCTACACAATT ATGGTCTTCTTGGGCAGCGTTTATGTATGATCAGCAAAGTGCATCAAGAAAATTTTGAGAAGTGCTTTGTGCAGCAGTAC TCAATGACTCATCGACTTGAAACAAATAAACTGCGAAATGTGGCCAAGTTTTTTGCTCATTTGCTTGGCACAGATACTCT ACCTTGGCATGTGTTATCCTATATTCGCTTGACTGAAGAAGACACAACTTCTTCGTCGCGTATATTTATCAAGATACTCT TTCAGGAATTATCAGAGCATCTTGGCATCAAGGTGCTAAATGAAAGGTTGAATGAGCCAACAATGCAGGACTCTTTTGAA TCCATATTTCCTAAAGATAACCTGAAAAACACAAGATTCTGCATTAACTTCTTCACATCAATTGGGCTTGGTGGTCTTAC TGAGAACCTCCGTGAGTATTTGAATAATATGCCGCGCCTTATCAAGCAGCAGAAGAAACAAGTTTCAGATTCTGAATCAG AGGATGAGTCTGGGAGTTTTGATTCATCGGATTCCAGAACAGATAGTTCTGAGTCAGAGTCAGAAAGTGATCGTGTGCAA CAAAGAAAACGGAGGAGAAAGTAG
Protein sequence (LotjaGi1g1v0114500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSMESRRRYDEDNRKRGRRREEEDRRRRNDRRDSGEEMDNVEKLERKRGLLNHNGRREPRLRYADERDRRRADEDNVK RVVLQLKKAYKRNDKPQLLASVKFVADLVNQQVAHETIALELLTVLLEKPTDEAVEVAVGFVKEYGSILQGLSPKGLHGI FERFRGILREGEIGKRGQFLIEGLFAIRKAKFQGYPAVQSELDVVDIDPEISLDVFKADPNYLENEKRYQELKNSILGEE EGSEDEEGSNADEDDESEVIDPETSLDIFKADPNYLENEKRYQELKKTVLGEEEGSNADEDDESGEESMQIKDETETNLV DLRRTIYLTIMSSVNLDGAGHKLLKIHLESGQEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQY SMTHRLETNKLRNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIKVLNERLNEPTMQDSFE SIFPKDNLKNTRFCINFFTSIGLGGLTENLREYLNNMPRLIKQQKKQVSDSESEDESGSFDSSDSRTDSSESESESDRVQ QRKRRRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 71 | 71 | - | – | |
| Gene3D | 74 | 237 | 164 | 4.1E-38 | ||
| SUPERFAMILY | 77 | 215 | 139 | 1.21E-26 | ||
| PANTHER | 79 | 258 | 180 | 3.0E-239 | – | |
| PANTHER | 79 | 258 | 180 | 3.0E-239 | – | |
| MobiDBLite | 235 | 264 | 30 | - | – | |
| MobiDBLite | 240 | 262 | 23 | - | – | |
| PANTHER | 257 | 566 | 310 | 3.0E-239 | – | |
| PANTHER | 257 | 566 | 310 | 3.0E-239 | – | |
| MobiDBLite | 287 | 315 | 29 | - | – | |
| MobiDBLite | 295 | 309 | 15 | - | – | |
| ProSiteProfiles | 321 | 437 | 117 | 21.584 | ||
| Pfam | 322 | 428 | 107 | 4.2E-26 | ||
| SMART | 322 | 428 | 107 | 2.3E-31 | ||
| MobiDBLite | 523 | 567 | 45 | - | – | |
| MobiDBLite | 525 | 560 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0114500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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