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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016021
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 66 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.739s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0078469.1
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 30204722 30208438 +
2 domain predictions
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Lj0g3v0093479.1
n.a. PREDICTED: programmed cell death protein 4-like isoform X1 [Cicer arietinum] gi|502093321|ref|XP_004489903.1| chr0 39148876 39152543 -
2 domain predictions
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Lj0g3v0139179.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr0 63721951 63731186 +
2 domain predictions
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Lj0g3v0146979.1
n.a. PREDICTED: regulator of nonsense transcripts 2-like [Glycine max] gi|356556505|ref|XP_003546565.1| chr0 67777224 67789021 -
2 domain predictions
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Lj0g3v0304579.1
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 158642771 158650142 -
2 domain predictions
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Lj0g3v0304589.1
n.a. n.a. chr0 158642922 158649605 +
2 domain predictions
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Lj0g3v0326709.1
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 170769621 170774915 +
2 domain predictions
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Lj0g3v0326709.2
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 170769621 170774915 +
2 domain predictions
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Lj1g3v2824910.1
n.a. PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cicer arietinum] gi|502105584|ref|XP_004492841.1| chr1 32181998 32184407 +
2 domain predictions
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Lj1g3v3244550.1
n.a. Eukaryotic translation initiation factor [Medicago truncatula] gi|357508251|ref|XP_003624414.1| chr1 36693721 36696724 -
2 domain predictions
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Lj1g3v3244570.1
n.a. PREDICTED: eukaryotic translation initiation factor 5-like [Glycine max] gi|356499628|ref|XP_003518639.1| chr1 36699833 36701752 -
2 domain predictions
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Lj1g3v3904180.1
n.a. PREDICTED: nuclear cap-binding protein subunit 1-like [Glycine max] gi|356570247|ref|XP_003553301.1| chr1 45337120 45357060 -
2 domain predictions
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Lj1g3v3975790.1
n.a. PREDICTED: nucleolar MIF4G domain-containing protein 1-like [Glycine max] gi|356570325|ref|XP_003553340.1| chr1 47011959 47020364 +
2 domain predictions
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Lj2g3v1337470.1
n.a. PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cicer arietinum] gi|502165076|ref|XP_004513404.1| chr2 20932591 20933637 -
2 domain predictions
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Lj4g3v1389290.1
n.a. Eukaryotic translation initiation factor 4 gamma [Medicago truncatula] gi|357477255|ref|XP_003608913.1| chr4 21675035 21679666 -
2 domain predictions
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Lj4g3v1989860.1
n.a. PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] gi|356562557|ref|XP_003549536.1| chr4 27760096 27765934 -
2 domain predictions
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Lj5g3v2045280.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr5 29050243 29059571 -
2 domain predictions
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Lj6g3v0938260.1
n.a. PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cicer arietinum] gi|502165076|ref|XP_004513404.1| chr6 10631930 10636477 -
2 domain predictions
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Lj6g3v1077300.1
n.a. n.a. chr6 12518279 12524881 -
2 domain predictions
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Lj6g3v1077310.2
n.a. PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] gi|356508366|ref|XP_003522928.1| chr6 12521330 12525188 +
2 domain predictions
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Lj6g3v1094850.1
n.a. PREDICTED: regulator of nonsense transcripts 2-like [Glycine max] gi|356556505|ref|XP_003546565.1| chr6 13570158 13581984 -
2 domain predictions
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LotjaGi1g1v0114500.1
n.a. Pre-mRNA-splicing factor cwc22, putative; TAIR: AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog; TrEMBL-Plants: tr|V4UB47|V4UB47_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0114500 LjG1.1_chr1 18030580 18032755 -
2 domain predictions
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LotjaGi1g1v0327400.1
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2RQV2|A0A0B2RQV2_GLYSO Nucleolar MIF4G domain-containing protein 1; Found in the gene: LotjaGi1g1v0327400 LjG1.1_chr1 78169925 78179809 +
2 domain predictions
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LotjaGi1g1v0327400.2
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2RQV2|A0A0B2RQV2_GLYSO Nucleolar MIF4G domain-containing protein 1; Found in the gene: LotjaGi1g1v0327400 LjG1.1_chr1 78169930 78179624 +
2 domain predictions
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LotjaGi1g1v0485800.1
n.a. Basic leucine zipper and W2 domain-containing protein 2; TAIR: AT5G36230.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q91VK1|BZW2_MOUSE Basic leucine zipper and W2 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7GEE1|A0A1J7GEE1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485800 LjG1.1_chr1 99896460 99902067 +
2 domain predictions
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LotjaGi1g1v0485800.3
n.a. Basic leucine zipper and W2 domain-containing protein 2; TAIR: AT5G36230.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5ZL42|BZW2_CHICK Basic leucine zipper and W2 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7GEE1|A0A1J7GEE1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485800 LjG1.1_chr1 99898290 99901698 +
2 domain predictions
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LotjaGi1g1v0485800.4
n.a. Basic leucine zipper and W2 domain-containing protein 2; TAIR: AT5G36230.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9Y6E2|BZW2_HUMAN Basic leucine zipper and W2 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7GEE1|A0A1J7GEE1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485800 LjG1.1_chr1 99898290 99901698 +
2 domain predictions
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LotjaGi1g1v0485800.5
n.a. Basic leucine zipper and W2 domain-containing protein 2; TAIR: AT5G36230.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q91VK1|BZW2_MOUSE Basic leucine zipper and W2 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7GEE1|A0A1J7GEE1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485800 LjG1.1_chr1 99899386 99901698 +
2 domain predictions
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LotjaGi1g1v0544600.1
n.a. Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544600 LjG1.1_chr1 107413292 107416671 -
2 domain predictions
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LotjaGi1g1v0544600.2
n.a. Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544600 LjG1.1_chr1 107413892 107415289 -
2 domain predictions
 –
LotjaGi1g1v0544600.3
n.a. Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544600 LjG1.1_chr1 107413892 107415289 -
2 domain predictions
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LotjaGi1g1v0544800.1
n.a. Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544800 LjG1.1_chr1 107419037 107422868 -
2 domain predictions
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LotjaGi1g1v0646000_LC.1
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7HJK2|A0A1J7HJK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0646000_LC LjG1.1_chr1 120304447 120312763 +
2 domain predictions
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LotjaGi1g1v0646000_LC.2
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7HJK2|A0A1J7HJK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0646000_LC LjG1.1_chr1 120304517 120312762 +
2 domain predictions
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LotjaGi2g1v0118200.1
n.a. Programmed cell death protein 4; TAIR: AT1G22730.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151SX73|A0A151SX73_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi2g1v0118200 LjG1.1_chr2 43345314 43350591 -
2 domain predictions
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LotjaGi3g1v0050800.1
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|I1KJP7|I1KJP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5298508 5321528 +
2 domain predictions
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LotjaGi3g1v0050800.2
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|I1KJP7|I1KJP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5299182 5320865 +
2 domain predictions
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LotjaGi3g1v0050800.3
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0B2PP65|A0A0B2PP65_GLYSO CCR4-NOT transcription complex subunit 1; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5299182 5320865 +
2 domain predictions
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LotjaGi3g1v0050800.4
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0B2PP65|A0A0B2PP65_GLYSO CCR4-NOT transcription complex subunit 1; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5299182 5320865 +
2 domain predictions
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LotjaGi3g1v0050800.5
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0R0J669|A0A0R0J669_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5299182 5320865 +
2 domain predictions
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LotjaGi3g1v0050800.6
n.a. CCR4-NOT transcription complex subunit 1; TAIR: AT1G02080.2 transcription regulator; Swiss-Prot: sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1; TrEMBL-Plants: tr|A0A0R0J669|A0A0R0J669_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050800 LjG1.1_chr3 5299182 5320865 +
2 domain predictions
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LotjaGi3g1v0070600.1
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7L149|K7L149_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070600 LjG1.1_chr3 7663418 7673753 +
2 domain predictions
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LotjaGi3g1v0070800.1
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7L149|K7L149_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070800 LjG1.1_chr3 7674511 7684738 +
2 domain predictions
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LotjaGi3g1v0070800.2
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7LAK0|K7LAK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070800 LjG1.1_chr3 7675566 7684464 +
2 domain predictions
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LotjaGi4g1v0225400.1
n.a. Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151TE45|A0A151TE45_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi4g1v0225400 LjG1.1_chr4 53096416 53101995 -
2 domain predictions
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LotjaGi4g1v0225400.2
n.a. Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4; TrEMBL-Plants: tr|A0A0L9TQG9|A0A0L9TQG9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225400 LjG1.1_chr4 53097617 53099708 -
2 domain predictions
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LotjaGi4g1v0225400.3
n.a. Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151TE45|A0A151TE45_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi4g1v0225400 LjG1.1_chr4 53097617 53101188 -
2 domain predictions
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LotjaGi4g1v0225400.4
n.a. Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4; TrEMBL-Plants: tr|A0A0L9TQG9|A0A0L9TQG9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225400 LjG1.1_chr4 53097617 53101188 -
2 domain predictions
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LotjaGi4g1v0225400.5
n.a. Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151TE45|A0A151TE45_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi4g1v0225400 LjG1.1_chr4 53097617 53101188 -
2 domain predictions
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LotjaGi4g1v0289300.1
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|I1MT11|I1MT11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0289300 LjG1.1_chr4 66165486 66171975 -
2 domain predictions
 –