Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0117000 |
| Transcript ID | LotjaGi1g1v0117000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter protein; TAIR: AT2G30080.1 ZIP metal ion transporter family; Swiss-Prot: sp|O64738|ZIP6_ARATH Zinc transporter 6, chloroplastic; TrEMBL-Plants: tr|G7K740|G7K740_MEDTR ZIP zinc/iron transport family protein; Found in the gene: LotjaGi1g1v0117000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18370590..18373532) extracted from Lotus japonicus Gifu genome v1.2.
ATCATACAATGTGGTATGGTAGAATTTGCCTTTTTGTTTAAGGGATCAATATATTTGTTGTTTCTTTTTCTATCTATCTC TATCTCGTACACACTCACTTGAAAAAATCCCAAACCAAAATGGTGATTTCATCATCATCAAACACAAACACGTAACAACA GAAAATGGCACTTAACTAGTTAACCTCACATCCTACTTTGTGGTCCACCTTCTTTATCACTCTCTTTTTCCTCTTCAAAA CTTCTTCATCTTCAACACTTCAACCCATCACACTTTCATCCTCACTCTCCTCCACCACCACCACTCTCCCTATCCCTCTC TCTCAGCTCTCACTCACCGTCCATGGCATCATCAGCCTGCGTGACAGACTTATCTCGAGCCTCATCATGCCGTGACGGCG CGGCGGCGGCCCACCTGAAAATCCTATCAATCTTCATCATCTTCATCACCAGCGCCGTCGGCATGTCATCACCGGTATTC CTAGCCCGCATCTTCCAGGGGAAGCCACTCTACGACCGCGCCGTCGTGCTCATCAAGTGCTTCGCGGCGGGTGTAATCCT CTCCACCTCCCTCGTCCACGTGCTCCCTGACGCGTACGCCGCACTCGCCGACTGCCACGTCGCGTCGCGCCACCCCTGGC GCGACTTCCCCTTCGCCGGACTCGTTACCCTCGTTGGGGTGCTGCTGGCGCTGTTCGTGGACCTCGCTGCGAGCTCACAT GTGGAGCACGCGCAGTACGCGCCGGTTGTCGCGACTGAGAAAGAGTCAGCCGTGGAGCTAGGAAGTGGCGGTGGTTGTGG CGGCGGTGAAGGGGAGTTTGAGAGGGGTGAGGAGTTGGTTAAGTTGAAACAGAGGTTGGTTTCTCAGGTTCTAGAAATTG GGATAATATTTCATTCAGTGATTATTGGTGTTACTTTGGGGATGTCTCAGAATGTTTGCACCATAAGACCTCTTGTTGCT GCTTTGGCATTTCATCAAATATTTGAAGGCATGGGTCTTGGTGGTTGTGTTGCTCAGGTAATTCATTTCTCTTCTCATCT AGTTGGGACTTGGAAAAAAATATTTTTACGTCGGAAAGATAAATTACACCTCAAGGAATTGATTTTTGGACCTTCCTCAT CCAACCCATACGTCTCCTAACTCCTACTACTTGAACTATCATTCGGAGATATGAGACATGAGACTTGACACTGTGTCGGA TAAGATTTTTTACTATTTTTCTTTCTTTAATTGGGTTTCTGAAATTGAATTGAAAACTTCCAGTCATTTATTAGTTTTTG TTTTTATAATCTGTTGACATTTATTAAATTGGTACCTACCATAAATTAGGGATGATTATATTGAGTTTCCTTATATGAAC TGTTATTTCTAAATCATTTACTTACTATATAGTCAAATCTTGTAAGGATCTTAGTTATGTTTGGGAATTTTCTGAACTTG TTCTGGCTCTTTGTATAATTTTAGTTATTTATGACCATATTTGACAAAATAGTAAAGTACTGTTTGACTTGTGAATTCAA TATTTTTTTATATAGTTTTTAAAATTGGATCAGACGGATCAGTTGGACCATAACCGGTCTATTGAAGGAAAAACTCTCAA AATCAATGAGACAGTTAAAAAAAACTATTCAAACCAGCTAAAATTTGTAGTGAACCGGTTTGAACCGGTCATATTTTAAC ATTTTCTAAAATATTCAGATAATTTATATTTTTTAAAATTTAGTACAGTTATATTTTATATATGAAAATAAATGTCTAAT ATTGGTTAGAATACCACCACATACATGGGTTATTGTTTTTATCCTTTTATTATTCATTTTTAATTAAATAAAATATATTC ATTATGATGATTTTATAATAGTTTAAAATTTAACTTGATCTAATTTCTTGACATTTTTTGTTAATAAATTATTTAATATG TTTTATAGTATTTAAAATATATATTTAATTATTATTGGTTCATGGAGGATTTGTTTTGTCAAGGTAAGTTTCGTTCAGTA ATTATTGTCTTTGGTTGGTATTTTCTTGTTTTTGAGTGTTCTAGTGGTTTGGGTTTTTCTCACTTTTTGGGTTTTGTTGT CTATGTTTCCATTTTGTTTTTGCGGGACTTTCTCTCTTTGTTTGTTTATCTTTTCTTGAGGCTCTGATCAAGTGATCATT CTCAAGATTATTGTTTCTTCACCTTTGCATCCCTAATCAACAACAATTAGTGTTTTAAATGTTCACTCATCCAAAACAAT CAGAACAAATAATTGCTTTATTTAGCTAGAAGATGCTAATTGGTACCCTTATATGGTTACAGGCAGGATTCAGCTTTGCA ACAATGGCATACATGTGCTTCATGTTCTCAGTGACAACACCAATGGGGATAATGTTGGGGATGGCATTGTTCTCCCTCAC AGGTTTAGATGATAGCAGTCCAAATGCTTTGATCATGGAAGGGTTACTAGGTTCAGTTTCTTCAGGAATTTTAATTTACA TGGCTCTTGTTGACCTCATAGCAATAGATTTCTTTCACAACAAGCTCATGAACTCTGATCCACGGTTAAAAAAGGTTTCT TTTGTTGCCTTAACACTTGGCTCTGCCTCAATGTCTATTCTTGCCCTCTGGGCTTGAAAATTTTAATTTTTTGTACCTTA GAGCTCAAATGTGTTGTTGCCCCAAAATTAGAGGGTATCAACTTAGATCAAGGAAAAAAAGGAGTGAGAATGATGTGTAA TGTGCTAGTGGATTGAACTAAATTGAACATATAATATGACCACTCTGTGTATACTGTATAGAAGTTAAAATTCATGGGTT CTAACTTGTAATTTAGATTGAAAGTGTTTTCTACGGAAACAAATCCTCTCTGAAATTTGTACAATTGAGAAAATTCTGAT CCATTTTCTATAAACCACTTATCTCTCCCATCTGGGGTAACTTCTACTGAAATAAACAAAGCA
CDS sequence (LotjaGi1g1v0117000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATCAGCCTGCGTGACAGACTTATCTCGAGCCTCATCATGCCGTGACGGCGCGGCGGCGGCCCACCTGAAAAT CCTATCAATCTTCATCATCTTCATCACCAGCGCCGTCGGCATGTCATCACCGGTATTCCTAGCCCGCATCTTCCAGGGGA AGCCACTCTACGACCGCGCCGTCGTGCTCATCAAGTGCTTCGCGGCGGGTGTAATCCTCTCCACCTCCCTCGTCCACGTG CTCCCTGACGCGTACGCCGCACTCGCCGACTGCCACGTCGCGTCGCGCCACCCCTGGCGCGACTTCCCCTTCGCCGGACT CGTTACCCTCGTTGGGGTGCTGCTGGCGCTGTTCGTGGACCTCGCTGCGAGCTCACATGTGGAGCACGCGCAGTACGCGC CGGTTGTCGCGACTGAGAAAGAGTCAGCCGTGGAGCTAGGAAGTGGCGGTGGTTGTGGCGGCGGTGAAGGGGAGTTTGAG AGGGGTGAGGAGTTGGTTAAGTTGAAACAGAGGTTGGTTTCTCAGGTTCTAGAAATTGGGATAATATTTCATTCAGTGAT TATTGGTGTTACTTTGGGGATGTCTCAGAATGTTTGCACCATAAGACCTCTTGTTGCTGCTTTGGCATTTCATCAAATAT TTGAAGGCATGGGTCTTGGTGGTTGTGTTGCTCAGGCAGGATTCAGCTTTGCAACAATGGCATACATGTGCTTCATGTTC TCAGTGACAACACCAATGGGGATAATGTTGGGGATGGCATTGTTCTCCCTCACAGGTTTAGATGATAGCAGTCCAAATGC TTTGATCATGGAAGGGTTACTAGGTTCAGTTTCTTCAGGAATTTTAATTTACATGGCTCTTGTTGACCTCATAGCAATAG ATTTCTTTCACAACAAGCTCATGAACTCTGATCCACGGTTAAAAAAGGTTTCTTTTGTTGCCTTAACACTTGGCTCTGCC TCAATGTCTATTCTTGCCCTCTGGGCTTGA
Protein sequence (LotjaGi1g1v0117000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSACVTDLSRASSCRDGAAAAHLKILSIFIIFITSAVGMSSPVFLARIFQGKPLYDRAVVLIKCFAAGVILSTSLVHV LPDAYAALADCHVASRHPWRDFPFAGLVTLVGVLLALFVDLAASSHVEHAQYAPVVATEKESAVELGSGGGCGGGEGEFE RGEELVKLKQRLVSQVLEIGIIFHSVIIGVTLGMSQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMF SVTTPMGIMLGMALFSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLMNSDPRLKKVSFVALTLGSA SMSILALWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 4 | 329 | 326 | 5.9E-166 | – | |
| PANTHER | 4 | 329 | 326 | 5.9E-166 | – | |
| TIGRFAM | 12 | 329 | 318 | 1.0E-114 | ||
| Pfam | 24 | 326 | 303 | 2.5E-61 | ||
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 27 | 48 | 22 | - | – | |
| Phobius | 49 | 59 | 11 | - | – | |
| Phobius | 60 | 82 | 23 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 83 | 101 | 19 | - | – | |
| Phobius | 102 | 123 | 22 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 124 | 175 | 52 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 176 | 195 | 20 | - | – | |
| Phobius | 196 | 200 | 5 | - | – | |
| Phobius | 201 | 223 | 23 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 224 | 234 | 11 | - | – | |
| Phobius | 235 | 257 | 23 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 258 | 276 | 19 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 277 | 297 | 21 | - | – | |
| Phobius | 298 | 308 | 11 | - | – | |
| Phobius | 309 | 328 | 20 | - | – | |
| TMHMM | 310 | 328 | 19 | - | – | |
| Phobius | 329 | 329 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0117000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…