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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0120300 |
| Transcript ID | LotjaGi1g1v0120300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT2G18410-like protein; TAIR: AT2G18410.1 elongator complex protein; Swiss-Prot: sp|F4IQJ2|ELP5_ARATH Elongator complex protein 5; TrEMBL-Plants: tr|K7KA66|K7KA66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0120300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19007974..19011734) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATTTACGGACAAAGCCCTAGAAATGAAACAAGTGAACCAACACCCCTTCCCCCAAAGAAAATGGCTGAATCAATT TGCAGAACCCTAAGAGATGGCGCGTTAGAAGGAGAGCTCGCTCCCACTCTCACAATCACCGACTCTCTCACTTCACCACT CGCCTCCGATGTATTCTCCCACCTCCTCCTTCAACTCTCCTCGCACCTCATCGCATCAAAATCCCACTCACAGTTCCGTA GTGGTATCGTCATTGTTGCACTTTCTCGGACTCCATCGTCTTATGCTGCTTTGTTCAAGACCAAGGGTATTCATATTTCA TCTTCTAACAACAACTGGTAATTCACCAAAACTCATTTCACTTTCTTTAGTTTAAACAAATTTCGATATGTTTACATTCA ACAATAATGTTATTTTGCAGGATTCACATTTTGGATTGTTACACTGATCCTCTTGGTTGGAAAGAAAAGCCAAGGAAGTC ACAAAATGTTACAAATCCTTCACACCAAGTTTCACTTGCTACTACTTCTTATAAAACCGTCAAGGATTTGGATAAGTTGT TCTCGGTAATTACTGAACTTGGCAGAGGTATTGCAGTTAGATTGTTCTGTAACTAATGTTGGATTTCACTAAATAATCAT TTTTATTTTGAATAATTTTTCTCAATTCATGTGTAGGATTGATTGGAGAAAATAAAGCGCGCTTCTGTGTGGCCATAGAC TCGGTAATTTTTTTTCATGCTATGATTGTCAAAATATGATAAAAATTTCCTGCTAAAGAGTTCTTGGTGTGATATTTTAT CTGTTTGTGTATCCATAATCCTAACGGATTCTTGTTGGATATGATCAGCTAAGTGAACTGTTGAGACATGCATCGTTGCA GTCAGTTGCCGGCCTTCTAAGCAATCTGCGTAGCCATGGTATTTGCTTTTGTACTGTTTTGAGTAAAGTTCCCTGCATAG TGTTATCTTGTTTATTGTTATTTGAGTAAAATTCTAGGAATATTAGAACATGTGGGATAGTTAATTTTCTCAGCAGCTAA TATTCATGGCATGGATTGAGTTGATGCATCAATAATTTCTGCGTTAAACTTATTCCTGTTTTATGGTTGCAGATCAAATT TCAAGTATTTTTGGTTTATTGCATTCTGACCTTCATGAGGAGAGGGCGGCAGCTGTTCTAGAGTACATGTCTTCCATGGT GGCCAGTGTGGCACCACTTCATCATTCTGCTGAGAGAGGTAATTTAGAGAACTCCTTATCGGAGCAAAACTTCACCAAGG GAAGACTTAATGTCAGGTTCAAGCGCAGAAATGGGCGAGTTAGAGTAACGGTGATCTTTTTCTTCCTGTTTGCAAAATTA TTTGAAATTTCTAATCTGAAAAATTGGTGCACTGATATAATATCTCTACTACTCAGTGTGAAGAATTTAAAGTTGAGGCT GGAGGAATCAGCTTGACCTCTGTTTCATCAGCTGATGGAGCAACCGTTGCAGGCCTACTGCCAAAGGTCAGTTTATAGTT TCCCATGCATGGAAAACTGGTTTTACATGTGATTCGTGTGTCTTCTCCTAGGAGGAAAAGCCTAATTCCTCACAACCTTT TTGTAATTGAAGATTTTAAATAGTTTTAAGAAGAAAAAGGATATGCATAAGAAAACATTAATCTCTTAGTGAAAGGAGAA CATAGCTTTCACAAGTTTTTTTAAAAAACTAAAAAATTTAGATGATATGAAAGATAGCAGCACTCAAGCATAACTGTCCA ACAACTTCCCAGTGTGCCTACTTAATTTTTTGGTTGGACTGCTGAGCGCTACTAACATGGCATTAAGGGTTTTAAAGTTG TGATTGATGGTTGTGGCTATTGTGGGATGATGCAACCAATTATGGCTGATTCAGTTTGCAATCTCAGGCTCTCTGCATGA TGCAGTTGTGGGGGCCTCTACAACCTAGATTTTGAGACTGCATCATGTGATGTTCTCCACAATTTAAAATCTTTTAGTGC ATGGTATAATTTCCATGCAAAAGATTGATGAGCAAATCAAAATGTTATATCTAATTTGCGACACTACAAACTGTCTTGGA AACATCTAAATCCATGGGTGCATAAGCACTTGGTTGGTTCACATGCTTTTATACACACATCAAGATACTTCTGATGTCTG AGCTGATGTGTGTACGTGGACACGGTCAGAAATACTAGTCAAGAGAATGACACCGATCAATTAAGAAATGCTTTGTATTT GTTATGTGAAGTTTTCTTTTCATTGACTGTAAATAAATAATAGGTAGAAACTTGATGTGTTTTTTTCAGGTACAATTCAA TCTCCAGTTGTCAGAGAAGGAGAAAACTGATAGGGCAAAGGTTGTGCTTCCTTTTGAACACCAAGGTCTGAAATAGATTT AAATTTGTTCCCATCTTATATTGTTTCAATGAAATATTATTTGCTCTTGTACTTAAGCTCTTTTTTTCTTTTAGGAACTG GTAGACCAATACAAATTTATGATGGTAGAAGATCCCTTGATGATAACAGCAGTGAGGCTGCACCCATTTCAAGTGGTAAA AAGGAGAATTCTGAGATGGGTGAGATTATATATTTTCGTGATTCAGATGATGAGATGCCAGATTCTGATGAGGACCCAGA TGATGATTTAGATATATGAACATTCTCTTGTTGGTATCTTCTGCATCCCAAGGTTACCTGAAGGATAGATTAGGTTTCTA ATTAAGGCTTTGTTTGGATTTTGGGGGGATGGAATGAATTAGAATATAGAGGAGACAGAGGGAAAGATCCACAGTTTGTG TTGTTTAAAAGAGGATCTAACTCAATGGAAACCAATTGTATATGTTCCACTGCATTCTCTCACTTTTGTCCCCCACCCCA GTCTGAGAGAATTGGAGTGGAACAAAAATTGAAGAATGTAAAGATTGATTAATCCAAAGCAAACTTTGTGCCATTGAAGA ATGTAAAGACTGATTCATCCAAGAGGGCGGCACCAATGTGTTTCATCTATCCTATGTAACAAATTGAGGATCTTCTCTTT TTATATGAGGAAGAGTACCATCAACAAATTGATTCATATTCTTTGATTTGAGAGCCTCACATAGCTTATGACCATGGATG ATATAATTACCACCAGTGAGTGGAGCTGAAACCAAAATGGCTCTAGAAATATGAAGATTGATCCACTATCGGATTCTCCA CATCGTCAAGAAATAACCAAACAGAGAATTGGATGAAGAAACCACCAACAGACAAATAATAAGATGAAGAAATGACCAAC GAACAAAGAATATGGTGAAGAAATCACCAACCAACAAAATAAAACATATAGACGAATCTGAGAACCATTCACAATAATGT AGCCATGAGCGCGCACCAGATACCATATCAGAACATTACAAAAAATGTCGAGAGAAAAATGAATAAAGATGAGAGAAAAT GTTAATAGAAGTCTTTGCTTCTATTTATATATGCTAGAAACTAACAAAAACTAGCAACAAACTTTGAAGCTAACGAAGTA GAAAATGTAACAAAATATAACTACTTGATATCACTAATGATGGGTCTAAACTGGTCAAGTCACTAGCGAGGTGTTGGTTG GGGAGGAAATGGCGGAACTCCGATCAAGGTGAGCTTTATCAAGTGAGAGATGGGATGGGATACGTCGATGCCGACCACCG CTGTCGAGCCCAGTAGGGTCTTTGCAATGACACTTCAATGCCTAAGTTAGTGGTTAGGGAGTTTAGGGAATTCTCTAAGA C
CDS sequence (LotjaGi1g1v0120300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAATCAATTTGCAGAACCCTAAGAGATGGCGCGTTAGAAGGAGAGCTCGCTCCCACTCTCACAATCACCGACTC TCTCACTTCACCACTCGCCTCCGATGTATTCTCCCACCTCCTCCTTCAACTCTCCTCGCACCTCATCGCATCAAAATCCC ACTCACAGTTCCGTAGTGGTATCGTCATTGTTGCACTTTCTCGGACTCCATCGTCTTATGCTGCTTTGTTCAAGACCAAG GGTATTCATATTTCATCTTCTAACAACAACTGGATTCACATTTTGGATTGTTACACTGATCCTCTTGGTTGGAAAGAAAA GCCAAGGAAGTCACAAAATGTTACAAATCCTTCACACCAAGTTTCACTTGCTACTACTTCTTATAAAACCGTCAAGGATT TGGATAAGTTGTTCTCGGTAATTACTGAACTTGGCAGAGGATTGATTGGAGAAAATAAAGCGCGCTTCTGTGTGGCCATA GACTCGCTAAGTGAACTGTTGAGACATGCATCGTTGCAGTCAGTTGCCGGCCTTCTAAGCAATCTGCGTAGCCATGATCA AATTTCAAGTATTTTTGGTTTATTGCATTCTGACCTTCATGAGGAGAGGGCGGCAGCTGTTCTAGAGTACATGTCTTCCA TGGTGGCCAGTGTGGCACCACTTCATCATTCTGCTGAGAGAGGTAATTTAGAGAACTCCTTATCGGAGCAAAACTTCACC AAGGGAAGACTTAATGTCAGGTTCAAGCGCAGAAATGGGCGAGTTAGAGTAACGTGTGAAGAATTTAAAGTTGAGGCTGG AGGAATCAGCTTGACCTCTGTTTCATCAGCTGATGGAGCAACCGTTGCAGGCCTACTGCCAAAGGTACAATTCAATCTCC AGTTGTCAGAGAAGGAGAAAACTGATAGGGCAAAGGTTGTGCTTCCTTTTGAACACCAAGGAACTGGTAGACCAATACAA ATTTATGATGGTAGAAGATCCCTTGATGATAACAGCAGTGAGGCTGCACCCATTTCAAGTGGTAAAAAGGAGAATTCTGA GATGGGTGAGATTATATATTTTCGTGATTCAGATGATGAGATGCCAGATTCTGATGAGGACCCAGATGATGATTTAGATA TATGA
Protein sequence (LotjaGi1g1v0120300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESICRTLRDGALEGELAPTLTITDSLTSPLASDVFSHLLLQLSSHLIASKSHSQFRSGIVIVALSRTPSSYAALFKTK GIHISSSNNNWIHILDCYTDPLGWKEKPRKSQNVTNPSHQVSLATTSYKTVKDLDKLFSVITELGRGLIGENKARFCVAI DSLSELLRHASLQSVAGLLSNLRSHDQISSIFGLLHSDLHEERAAAVLEYMSSMVASVAPLHHSAERGNLENSLSEQNFT KGRLNVRFKRRNGRVRVTCEEFKVEAGGISLTSVSSADGATVAGLLPKVQFNLQLSEKEKTDRAKVVLPFEHQGTGRPIQ IYDGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 374 | 374 | 9.1E-96 | ||
| Pfam | 127 | 310 | 184 | 2.2E-17 | ||
| MobiDBLite | 317 | 374 | 58 | - | – | |
| MobiDBLite | 359 | 374 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Cellular component | Elongator holoenzyme complex | A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes. |
Expression pattern of LotjaGi1g1v0120300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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