Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0120400 |
| Transcript ID | LotjaGi1g1v0120400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytosolic Fe-S cluster assembly factor NBP35; TAIR: AT5G50960.1 nucleotide binding protein 35; Swiss-Prot: sp|Q8H1Q2|NBP35_ARATH Cytosolic Fe-S cluster assembly factor NBP35; TrEMBL-Plants: tr|A0A061F9B5|A0A061F9B5_THECC Cytosolic Fe-S cluster assembly factor NBP35; Found in the gene: LotjaGi1g1v0120400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19016813..19019508) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCCGTTTCATCTATGATCTATCGTCTTCCTTACGGACTCGCTGGAACACGCTTATAAGAAGGAGTGAATTGCATGCA TTAGGCTGTCACAGAGGGACTCGCTGGAACAGAACAACAACCTGGTTTTGGATTTCAAACACACTCAGGTACGTACCGTT GCTTGCTACTAATTATCTTCTATTTTGATCTCTTTCTGAAATTCATGGATTTTTTAATCACTGATTTCTACTCTGTGTGT GGTGGTGTTAATATGAATGTCTTAATATTTGAGTGGAAACAAGGACAGGTTTTGGTACGGTATCTATCTCTCTGTATTAG GATATTTATCAACAAACATGTTGTCTAGCCTAGCCTATATGGTAAATAACAGATAAAACAATATCTTTGTATGTATAGCT ATTGTACATGCCAATAAGAGTGCACTGTGATCAGGAATTTAATTAAAGTGATAGAAGAATCAATACACATGAAAAGCTTT GCTGTCATATCTTTCCTGTGGTCTCTTGATTATGAGGCGTGAGGTTCTTTATTCTGACTGTAAAAAAAAACACATGTATA TAAGTCTTTCTTCTCGTTGCCTATCATTATATTGGAATTGGACTACAACAACCCTTATAAACGTTTCTCATCTTTATTTG TCACATTCTTCGTTCAGATAAATAAACTTTCCCAGCTTTTCTTTATCCAAAAGAGCTTCCATGGAGAAGGGAGATATTCC TGAGAATGCCAATGACCGTATGTACACATTTAACTTATTTTTTGAATTTCAATTTTTTGCTTCTATATAATATGATTGAT TGTCGTGTTTTCGCATTTACAGATTGCCCAGGTTCTCAATCTGACTCTGCTGGAAAATCCGATGGATGCCAAGGATGCCC AAATCAGCAAACTTGTGCCACTAGTTCCCCCAAAGGACCTGACTCTGGTACTCTAGCTCCACTGTTATCTTATGCTTTTA TCCCTCGTGGCCTCCTTCTAATAACTATCAAGAGCTATTTATTTATATAAGCTTATTATGTGATTCATGAAATAAAAGTT AGCTACAAATTAAATTATTTTCTGATTGTCATGTCACCATCCCAATGGTGTGTAAATTAATAAAAATGTCATCAATAAGA TTAATTTGGTCCTGGTGCATGCATTATAAAGTTTTAGAAATGTAAGATGTGAGCTCTCTATCTTGTTGCTAAACTTTTCC TTTAAGATTCATATATAGCTTGTGTTTAGATGGTGCATTTCATAATTTTAGATAAATTAAGGTGTCAAGCAATTGAATTG CATGAATTAATATGAAATTTGGTGCTATATATGTCTGCAGATCTGGTTGCTATAAAAGAAAGAATGGCTACTGTGAAACA TAAGATATTGGTCTTATCAGGAAAGGGAGGAGTTGGCAAGAGCACTTTTTCTGCCCAGTTGGCATTTGCTTTAGCGGCGA AGGACTTTGAAGTGGGTCTTCTTGACATAGACATTTGTGGTCCAAGCATCCCAAAGATGCTTGGCCTAGAAGGTCATGAG CTACACCGGAGCAACTTTGGGTGTGATCCTGTCTATGTGCAGCCCAACCTTGGTGTCATGTCAATTGGGTTTGTGAATTC TGATCCTGATGATCCTATTATATTAAGAGGTCCACGCAAAAGTTGGCTTATCACAGAGTTTTTAAAAGATGTCTATTGGA ATGAACTTGACTTTCTAATTGTTGATGCTCCACCTGGAACCTCAGATGAACAAATTTCAATTGTTAAGCTCCTTGGTGCC ACTGGATTAGATGGTGCAATTATAATTACTACACCTCAGCAAGTCTCTCTTACTGATGTGAGAAAAGGAGTGAATTTTTG CAAGCAAGCTGAAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGCGGGTTGTGCCAGCCCGTGATGGATTTCAAGTTTT TGAAGTTGGCAAGTAACGGTGAACAGAAAGATGTTACAGAGTGGTTTTTGAAATTCATGAGAGAAAAAGCACCTGAAATG GTGGATATGATTGCATGCACTGAAGTATTTGATAGTAGTGGCGGTGGAGCAGTGAGGATGTGTAAGGAAATGATGATACC ATTTCTCGGTAAGGTTCCTTTAGATCCCAAGCTTTGTAAGGCAGCTGAAGAAGGTAGATCCTGCTTTGATGATAAGGATT GTGTTGCGAGTGCTTTTGCATTAAAGAATATTATAGAGAAGTTGATGGAAACGGTTGAAAGTGTGCCCTAGGATGCTTCA GAACTATTTTTGATTTATTTTTAACTAGTCAAATTTAGAAAAAATACGATTAAATAATAGAAATCAATATTATAATTATT TTTATCATAATTATCATTGTCTTTTTTTTTTTTTGAATTCCACGAAAAGTTTATCTTCTTCGAAGTCTTCTTCAGCATTT GTTCCTCAACATGCCACCTGCCCACCACCTTTGTTGGTATAGCAGCAGATTTACCCTAACATTGTTCAAACAATTACCCG GTGTAGGCACATATACAAGTATTTGTATATATTAAACTTACAAGTGATATAGATTTTCCTTTATTCTAGCTTGGGCGTTG GATGTAGCAGCTGGGAGGTTGGCTATTTTTCATCACTTGGCTAACATCTTCAACATGTGATGGATCTTGTGATTTAGCCA AGATAGGGTACTTTCAACCCCTATTATTATAACAACACTGCTGCATCTATTCTGTG
CDS sequence (LotjaGi1g1v0120400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGGGAGATATTCCTGAGAATGCCAATGACCATTGCCCAGGTTCTCAATCTGACTCTGCTGGAAAATCCGATGG ATGCCAAGGATGCCCAAATCAGCAAACTTGTGCCACTAGTTCCCCCAAAGGACCTGACTCTGATCTGGTTGCTATAAAAG AAAGAATGGCTACTGTGAAACATAAGATATTGGTCTTATCAGGAAAGGGAGGAGTTGGCAAGAGCACTTTTTCTGCCCAG TTGGCATTTGCTTTAGCGGCGAAGGACTTTGAAGTGGGTCTTCTTGACATAGACATTTGTGGTCCAAGCATCCCAAAGAT GCTTGGCCTAGAAGGTCATGAGCTACACCGGAGCAACTTTGGGTGTGATCCTGTCTATGTGCAGCCCAACCTTGGTGTCA TGTCAATTGGGTTTGTGAATTCTGATCCTGATGATCCTATTATATTAAGAGGTCCACGCAAAAGTTGGCTTATCACAGAG TTTTTAAAAGATGTCTATTGGAATGAACTTGACTTTCTAATTGTTGATGCTCCACCTGGAACCTCAGATGAACAAATTTC AATTGTTAAGCTCCTTGGTGCCACTGGATTAGATGGTGCAATTATAATTACTACACCTCAGCAAGTCTCTCTTACTGATG TGAGAAAAGGAGTGAATTTTTGCAAGCAAGCTGAAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGCGGGTTGTGCCAG CCCGTGATGGATTTCAAGTTTTTGAAGTTGGCAAGTAACGGTGAACAGAAAGATGTTACAGAGTGGTTTTTGAAATTCAT GAGAGAAAAAGCACCTGAAATGGTGGATATGATTGCATGCACTGAAGTATTTGATAGTAGTGGCGGTGGAGCAGTGAGGA TGTGTAAGGAAATGATGATACCATTTCTCGGTAAGGTTCCTTTAGATCCCAAGCTTTGTAAGGCAGCTGAAGAAGGTAGA TCCTGCTTTGATGATAAGGATTGTGTTGCGAGTGCTTTTGCATTAAAGAATATTATAGAGAAGTTGATGGAAACGGTTGA AAGTGTGCCCTAG
Protein sequence (LotjaGi1g1v0120400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKGDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATSSPKGPDSDLVAIKERMATVKHKILVLSGKGGVGKSTFSAQ LAFALAAKDFEVGLLDIDICGPSIPKMLGLEGHELHRSNFGCDPVYVQPNLGVMSIGFVNSDPDDPIILRGPRKSWLITE FLKDVYWNELDFLIVDAPPGTSDEQISIVKLLGATGLDGAIIITTPQQVSLTDVRKGVNFCKQAEVKVLGVVENMSGLCQ PVMDFKFLKLASNGEQKDVTEWFLKFMREKAPEMVDMIACTEVFDSSGGGAVRMCKEMMIPFLGKVPLDPKLCKAAEEGR SCFDDKDCVASAFALKNIIEKLMETVESVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 3 | 347 | 345 | 3.4E-147 | – | |
| PANTHER | 3 | 347 | 345 | 3.4E-147 | ||
| Hamap | 7 | 347 | 341 | 44.347 | ||
| MobiDBLite | 12 | 43 | 32 | - | – | |
| SUPERFAMILY | 49 | 323 | 275 | 9.25E-47 | ||
| Hamap | 54 | 343 | 290 | 33.087 | ||
| Pfam | 59 | 247 | 189 | 4.7E-75 | ||
| CDD | 61 | 314 | 254 | 1.08655E-104 | – | |
| ProSitePatterns | 167 | 183 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Iron-sulfur cluster assembly | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of LotjaGi1g1v0120400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…