Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0120500
Transcript ID	LotjaGi1g1v0120500.1
Lotus japonicus genome version	Gifu v1.2
Description	Kinase PfkB; TAIR: AT5G58730.1 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp\|Q93Z01\|MIK_ARATH Inositol 3-kinase; TrEMBL-Plants: tr\|I1MBA8\|I1MBA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0120500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:19019717..19023613) extracted from Lotus japonicus Gifu genome v1.2.

CACTTGTTTCCTCTAAAACTGTCATCCTAACATCGTCAAAGGTTGAGCTCCGTTGCTAATGTCTTCATCGGTCTTATGTC GGTGTGCCACATATTGAATAAAACTTATGTGACAGAGCCACATAGGACCGGTAAAGATACTTACCCAGCCTCCAACAAGG ACTAGAAGTAGGTTATTTTCCAAAAATTAAGGACTACTGCTTTGCAACTTTACCTTGATGGTGAACTATATTCAGATTTA TTACATAACTATACTAGTTTGATCAAGGAAAAAATTGAGGACTTTTATTATGAAAAGAACAAAAAAGTTTGGTGCTTGGT GGCGGCTAAGCAGGCATTCTAAACTGACACCTAACTCTGATTTCGGCGCGCGTCCATTTTCCTCATCTTCTTCCACTGCA TGCCTTCCATGACCCACCAAACTCCCTCACCATGGTCTCCGATTCCACCCTCCGCCGCGGCCTCATCGTCGGCAACTACT GCCACGACGTCCTCCTCCGCGACTCCCTCCTCCTCGCCCACACCCTCGGCGGCGCCCCCTCTTTCATCACCCCCATCCTC GACTCCCTCTCCCTCCCCTTCCACCTCATCTCCAAGGTGGGACCCGACTTCCCCTTCTCCCCCACCCACCCCCCTCTCGT CATCCCAACCTCCCACACCACCCTCTTCCACGCCCACTTCGGATCCTCCCTCCCGGATCGGGTCCTCAATCGGGTCGCAG CATGCGACCCGATTGCACCCGCGGATCTTCCAACCGGGTCGAGATTCGCGTTCGGGTTGGCTGTTGGTGTCGCCGGGGAG ATTCTCCCGGAGACGCTGGAGAAGATGGTGGAGATTTGCGATGTGGTGTTTGTCGACGTGCAGGGTCTGATTCGGAGATT TGACGGTGAAGATGGGCGCGTGAGGCATGTGGGGTTGAGGGAGAGTGGATTCTTTCACCTCTTGCCGCGGATTGGGTTTC TGAAAGCTTCGGAGGATGAGGCGGAGTTTGTTGATGTGGAGGAGGTGAGACGGTGGTGCTGTGTGGTGGTTACGCATGGG AAAGATGGGTGTGAGGTGTTTTGGAAAGATGGGGGGTTGAGGGTTGACCCGTTTGGGGCTGATCAGGTTGATCCTACTGG TGCTGGGGACTGCTTTCTTGGTGGTTTTGCTGCTGGGATTGTGAAGGGTTTGGCGGTGGCTGATGCTGCTTTGTTGGGGA ACTTCTTTGGTTCTTTGGCTGTGGCTCGAGTTGGACCACCTGCTCTTGATTCAAGCTTGTTTCAGGTTTGTTTCTCACAT CCTTGGTTTAATCGATAGTGCATTGTCAACTAGTTTGATGGTTTTCTTGCATAGGACAAGTTTGGATTCTATTACACCAT GCTAGAAATGCTAAAGATGCAGAAATGGCTAGTTCGTTCAGTTTGGATGAGGATTAATTGAATTTGTGATGAAGCATTAG TGAATAAGTGGTTAATTCAGTTTGACAATTGGTTGATACCCTGCTTGTTTCTCAGATTATGTCTATGAATGTGAACTAGC TGTTTTTCTTGTAACTATAGTAATGGTAACTTAATACTTGAGATTTGGAGAATTGAATTCTATTAATATTCCCAAGAAAT GTGAGGTAGAGGAATGGTTAAATCATTCAGTTGGAATAATGGTTAAGGTTGTGTTTGAATATCTGTTTTCACCATTGCAT ATATATGTTAGCACCCACTTTAAGACTCTTCTTATGCATTTATGAATTAGGATGAAGTTTGTTCGTGCTGCATCAATTTG GTATCCAAACACACGGTAACTCTGTAGTTTAAGTATGTGGCTAAGTGCATGTTAGGAGAAGCACACGTTCCAAACTTAAG TTCTGTGAGAAGTAAGAAATTGTTGCATCTAGGAGACTCTTGTTTGTTGAGACTTGACATGACTACTGAAAACAAGCTCT AATTCTACTCTGTTTGACAAAAAATATAACTCTAACTTAGGTTAGTGAGAGCCTTAAGGATAAAAGGAGAATGTGATCTT AGTTACTTTGGTATTTGGTCCTCAGATGTTTGATGTTAAGCACTAGTCATGCTTTTAGAAAGAGCTCTAGGTGGTTTGTG AATTAATTGGGTTATGAATTGGGGGGAGGTTTTGAAAGTAATAAATAGTATGGATTAGTTTGAGGTTTTTGATTGACGTT AGCCTTCTATCAAATTCAGACATTTCTATATATCCTCAAGTAACTATCATGCAATGTCAAGAACAAAATGGTATCATTCT ATCTACTGCTTATCATAGAGTGATTTAACTAGTTTGTTCCAGAATTACCTACTGTATCATTGTTGCTTTTTGTTTCCTTT GTATCATTCTAAAGGAAATGTAAAGTTTTACTCGTGACAAGGTCCATAGTTGACCATGTTCACTTAAGATTTTTATTATT ATTTGGACCCTGTTTGTTTAATTTTTAGTGATGAATTCTTTTGAACTTTCTCCATTTCCCATGGTCTTAGCCAAATCTTA AGAAGAAGTATAAATATCCATTGTAGTAATATCAAAGAAGGATTTAAGTCTAAGAACGACATGATAAAATTGAAGGTATC TGCAATCTGCAGCAATAAATACATAGATAACGATCTTATGCGTGTGTCAAAGCAGATTTGTTTGCAGCATATTCATATTG TACTTCTCGCTTACTTGTTGCTTAGTCTTATAATTGATTCCCGATCTAGGTGTGTTCTGTATCATAAGCTGTTCGGACTT GAGTGTGTTCATATGCCCCTTCTAAAGCAATGCAAAAAACATGTAAAATAAATCATGTTTCCCTCACTTTTATTGATATG ATGGTAAATTTCAGATGGTTAAGGATGAGATTCACAAAAGGAAGGGGCAGGACTTACCCTGCTCAGAAAGAAGAGATGAG CGGCTGGGATTTCAGAAGCCACCTGATCAAGACCAATTTTATGCATCTCTTGATGCTGCCAAAGACATAATTATGTGTCA GATTCAAGAATCTGGGTGGAATATATTGAGCTCTCCAAAAGGGTTGGAGCAAAATCATGTGAAGGGACTTTCACTGAACC CTTTCCACGACGAATCAATTACAAGTGTTAATGGTGAACCCTGATATCATGGGATGGTTGGAGCTCCAAATCTTGCTCCA GCATCATTCCTTTTTGCCTCAAATAATATAGAGATCTCCAACACCAAGTCTCACGTGTAGCCTAATATAGTTTTAGTTGT AATAAGATGCTCTTTTCCAAATCAAGAGATTGAAATTCCATTCATGTTTTTATACTAAGCTATTAGCTATCATATTCTAT ACCTTTTCTTTTCTTGTAATAAGCTTCTGTTCCAATCTCCCTCCCCAAAAGAAAGAAGAGGAGGCACAATGACAATATGT AGGTCAACCATTCAACCCTAGTGGGTTGATTAGGACATTGGCATAGTTCAAAATATTTAGCTACTTAGGTCAACAGATTA GTGCAAAGTATCATTAATCTGCATGGTGTTAGCTAGTCCCCAGTCTCTGCTATTTCAGAGGAATAGGATAAGGAATGTTT TTAGTTGTTATAATATGGTTGGTATTTAATTTTAACCCATGATTTTAAAATGCTGTATTTTGTTTGATCATTTTTAAATG GTCTAACTTTAGTCCTCAATTTTTGCTTTGTTAGGGTTTTAGTGTAAAGTAATCTATGTTGAATAGCTGTGATGGATAAG TGTCTTACCACAAATATTGTTTAGTATTGATATCACACTTTTAGTATAGTTTGGTTTTCCACTTTCTTAACTGTAAGATA TCTGAGTCTTTTTAATGCTACAACCATCTTAGCTAGAGACAAGCAGTACTAGCCATGTTTGAGTGGAACATATATTATGA GGAGGTTTGCTATTTTAAAATAAGAAATTGAGAAGTATAAATGAAGAAATTAGGCCT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0120500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCTCCGATTCCACCCTCCGCCGCGGCCTCATCGTCGGCAACTACTGCCACGACGTCCTCCTCCGCGACTCCCTCCT CCTCGCCCACACCCTCGGCGGCGCCCCCTCTTTCATCACCCCCATCCTCGACTCCCTCTCCCTCCCCTTCCACCTCATCT CCAAGGTGGGACCCGACTTCCCCTTCTCCCCCACCCACCCCCCTCTCGTCATCCCAACCTCCCACACCACCCTCTTCCAC GCCCACTTCGGATCCTCCCTCCCGGATCGGGTCCTCAATCGGGTCGCAGCATGCGACCCGATTGCACCCGCGGATCTTCC AACCGGGTCGAGATTCGCGTTCGGGTTGGCTGTTGGTGTCGCCGGGGAGATTCTCCCGGAGACGCTGGAGAAGATGGTGG AGATTTGCGATGTGGTGTTTGTCGACGTGCAGGGTCTGATTCGGAGATTTGACGGTGAAGATGGGCGCGTGAGGCATGTG GGGTTGAGGGAGAGTGGATTCTTTCACCTCTTGCCGCGGATTGGGTTTCTGAAAGCTTCGGAGGATGAGGCGGAGTTTGT TGATGTGGAGGAGGTGAGACGGTGGTGCTGTGTGGTGGTTACGCATGGGAAAGATGGGTGTGAGGTGTTTTGGAAAGATG GGGGGTTGAGGGTTGACCCGTTTGGGGCTGATCAGGTTGATCCTACTGGTGCTGGGGACTGCTTTCTTGGTGGTTTTGCT GCTGGGATTGTGAAGGGTTTGGCGGTGGCTGATGCTGCTTTGTTGGGGAACTTCTTTGGTTCTTTGGCTGTGGCTCGAGT TGGACCACCTGCTCTTGATTCAAGCTTGTTTCAGATGGTTAAGGATGAGATTCACAAAAGGAAGGGGCAGGACTTACCCT GCTCAGAAAGAAGAGATGAGCGGCTGGGATTTCAGAAGCCACCTGATCAAGACCAATTTTATGCATCTCTTGATGCTGCC AAAGACATAATTATGTGTCAGATTCAAGAATCTGGGTGGAATATATTGAGCTCTCCAAAAGGGTTGGAGCAAAATCATGT GAAGGGACTTTCACTGAACCCTTTCCACGACGAATCAATTACAAGTGTTAATGGTGAACCCTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0120500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSDSTLRRGLIVGNYCHDVLLRDSLLLAHTLGGAPSFITPILDSLSLPFHLISKVGPDFPFSPTHPPLVIPTSHTTLFH AHFGSSLPDRVLNRVAACDPIAPADLPTGSRFAFGLAVGVAGEILPETLEKMVEICDVVFVDVQGLIRRFDGEDGRVRHV GLRESGFFHLLPRIGFLKASEDEAEFVDVEEVRRWCCVVVTHGKDGCEVFWKDGGLRVDPFGADQVDPTGAGDCFLGGFA AGIVKGLAVADAALLGNFFGSLAVARVGPPALDSSLFQMVKDEIHKRKGQDLPCSERRDERLGFQKPPDQDQFYASLDAA KDIIMCQIQESGWNILSSPKGLEQNHVKGLSLNPFHDESITSVNGEP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43085 View details on PTHR43085 Search for proteins/transripts with this domain View external data on PTHR43085	7	304	298	4.3E-140	–
PANTHER	PTHR43085:SF13 View details on PTHR43085:SF13 Search for proteins/transripts with this domain View external data on PTHR43085:SF13	7	304	298	4.3E-140	IPR031094 Show description in modal box View details on IPR031094 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.1190.20 View details on G3DSA:3.40.1190.20 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1190.20	9	269	261	2.0E-42	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53613 View details on SSF53613 Search for proteins/transripts with this domain View external data on SSF53613	11	269	259	4.76E-29	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00294 View details on PF00294 Search for proteins/transripts with this domain View external data on PF00294	170	269	100	6.0E-18	IPR011611 Show description in modal box View details on IPR011611 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00584 View details on PS00584 Search for proteins/transripts with this domain View external data on PS00584	227	240	14	-	IPR002173 Show description in modal box View details on IPR002173 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639
GO:0010264 View details of GO:0010264 AmiGO InterPro QuickGO	Biological process	Myo-inositol hexakisphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds.	Subterm of View details of GO:0032958 View details of GO:0033517
GO:0016773 View details of GO:0016773 AmiGO InterPro QuickGO	Molecular function	Phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).	Subterm of View details of GO:0016772
GO:0019140 View details of GO:0019140 AmiGO InterPro QuickGO	Molecular function	Inositol 3-kinase activity	Catalysis of the reaction: ATP + myo-inositol = ADP + 1D-myo-inositol 3-phosphate.	Subterm of View details of GO:0016301 View details of GO:0016773

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0120500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0120500.1