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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0121300 |
| Transcript ID | LotjaGi1g1v0121300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alkyl transferase; TAIR: AT5G58770.1 Undecaprenyl pyrophosphate synthetase family protein; Swiss-Prot: sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2; TrEMBL-Plants: tr|A0A0L9VPG9|A0A0L9VPG9_PHAAN Alkyl transferase; Found in the gene: LotjaGi1g1v0121300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19122250..19125350) extracted from Lotus japonicus Gifu genome v1.2.
ATACGATGCCGTTTCAACTACTATCAAGTTACATTCGCACTCACGTTTATAAATTAAGCCGCACTCTTCATTCACACTGC ATTCTGCAATAGCTTAAACCATTCATTTTTGCCTTTGCCAAACAGATAAAATCGTTATCCTAGTTCAGGAATAAGATGCA ATTGTTAAGGCTCTATTTTCCCGCTCTCAAACAATCAGAATCATTATCCCGGTTCAGGAATAAGACACTACTATCGTTAA TGCTACCTTTTCCTGCACTCCCATTCCCTTCTTATCCCGTAACCGTTACTAGACGCAGCAGCACCATGACTCTTCCTGCA AACGTGGCGATTCAAGGTGACACGAACAACGGGACCTCCGTCGCCGAGGAGGAGCCGATTCCGCCGGAGCTGCGGTTAGA GCTGATGCCAAAGCATGTGGCGGTGATAATGGACGGGAACGGGAGATGGGCGAAGATGAGGGGGCTGCCACCGTGGGCGG GGCATGAAGCCGGCGTGCGGTCGCTGAAGAGGATGGTGAGGCTGTGCCGGAGCTGGGGGGTGAAGGTTCTGACAGTGTTC GCGTTCTCAACTGATAATTGGGTTCGCCCGAAGGTCATTGTTGTCAATTTTCTTTTGGTTCTAGCGTCGTGGTTGTTAAT TTTATGTAAGAGCTACATGAATGATTTTATATATTCTTGCAGTTTTGATTTTGTGATGGTTATGTTGGTGCAGTTGGAGG TTGGGTTCCTGATGATGCTATTTGAAAGAACTATAAATTCTGAAGTTGAAGCGTTTAAGAGGTACCAAACTCCCTGACTG CTCTACTGTCTTAACTCTTGATATGTTTAGTTTACTTCATTTAAACAAGTCATTAGATACTCTTAAACAAGGTTTTTTTT TTTAATTTATAGGAGATGTAACTCATAAGAAAAATGATTGTATATGATAGTATGAGAATAAATCATGCCTACTCTTGGAT TTAATCATAAAAATATTTTTCTCACCGTATTTTTCTCTCTATCACTCACTTTTTACCACATCACATTATATAACACATCA ATAACTTCTCTTTTCTATTCTTTTCTCTCTCTAATGTTTATACTACATTTTAGTTAATTTAGTTACAATTCATAATTCAT AAGAGAAAAAATATGATGCACCGACGATGTAAAACTTTTTTTACATCATCAACCAGTTAGATTTCAAGGATGTGTCACGT TAGTTAATAAAATTAAATAAAAAGAGAGATTTTCTCATATTTTGAAATCTAATTAGTTGACGGTGTAAAAAACTTTACAC CATCGATACATAGAAATTAAACTCAATTCATGTCGCTTGTATTTTTTTTTACATTGAACATATCATTGCTCAAGTAATTT TGTTTAAGACATTTGTGGTATGTAAATAAAATAAATAAATGTGTAATAAATTAGTAAACTCATTTTTGAATGGCTTATGG TGATTGGCCCAGTACTGACTTGAGTGACCCACATCACCAATTCATCACCTCAACATGAGTAATGACACACTAAGTTTTTC CATTCAATTTTCACCTTATTTTATATTTACTCTCTTCTTTTAATTTTCTATTATACCATCTTACATCTCATATTTTATCC CTCTTTTCTTTCTATTCTTATCACCCTCCACTTCTTCCCCACAAAAAATGACGTGTCAACAAAACATTATTGCCTCAACA TTGCTCAACTTGAGGAGAAGAAAAATTGTAGGAAATGACAAAATCAATATATTCATGTATTTTCGAGGTTATATTTTTTA TTTTCTCGGGTTTTGATTTATTCTTTGAATTATTTTCCTCTGCATCACATGATGTTAGGAACTTAAAAAAAATGCAATCA TGTGAAAATACGCAAGATATTCGTCCAAATATATATCATACATTGGTGCTAAGATACTATATTAACTAGAAATATGACTA AAATAATATTTATAAAAGATAGAATACCACTTACTTTTAGAGATTAATTTATATGCACCGACGGTGTAAATAAGTTTTAC ACCATCATTCAATCACATCCCTCCATTTTGTTAGTTTACAATTAATTTTGAATTTAAGAATATCTAAAAATAGGAAATGG AAGGCTGTGATTTAATGATGGTGTAAAACTTTTTACACCGTTGGTGCATAGAAATTAATCTCTTACTTTTAAGCAAATTT TTTGGGTAGAACTAATCCAACAAAATTTTAAGGATCGCTGATTCATGACATTTTGTCAAGATCACAACCAAAATTTTCTC TAAATTCTTCTTTGGTTTATTTTATTGTTCCTTATAACAAGTGGTTTCTCAATTAGATATTATTTGGGATCACTTTGTAA TATTTCCTTTTTTAACAGGGAAGGAATTCGAATATCTGTAATTGGAGATTCATCAAAGCTCCCCAAATCCCTGAAGAGAA TTATAACTAGTGCAGAGGAGAGCACCAAGGACAATACCAAACTCCAACTTATTTTGGCGATTAGCTACAGTGGGAAATAT GATGTTGTACAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGGCCTTGTTGATTTGGAAGACATAGATGAAAAAAT GATTGAGCAGGAACTGGAAACAAATTGCACTGAGTTTCCTAACCCTGATCTACTAATAAGGACTAGTGGGGAACTTAGAG TTAGCAACTTCTTGTTGTGGCAATTGGCATACACAGAACTAGACTTTAGTCGAGAACTTTGGCCTGATTTTGGGAAAGAG GAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTATGGTGGACGCCATTCATAAACTATTTGTCTGCA ATATGGTACCTTATAGGTTGGATTTATAATAATTAAGCTTCACAAATATAATTCTTGGCTGCCATATGTTCTAGCTAGGC ATAAGAAATATATGTTATCATGTAGCATATATATATATATATATATGAGAAGGGATTCATTCACTCCAGGAGTAAGTTAA AAAAGCTACTCCCAATCTTGACCCTTTATTTTATTTTAAAATAACGGCTCTGATCAAACCCTATAATCTGTCATGTGACT CCTTCCTCTCCCCAATTCCTCTTGCATTTTCTCGTTCTTCTTGTAAACATCTGGATCAACT
CDS sequence (LotjaGi1g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTGTTAAGGCTCTATTTTCCCGCTCTCAAACAATCAGAATCATTATCCCGGTTCAGGAATAAGACACTACTATC GTTAATGCTACCTTTTCCTGCACTCCCATTCCCTTCTTATCCCGTAACCGTTACTAGACGCAGCAGCACCATGACTCTTC CTGCAAACGTGGCGATTCAAGGTGACACGAACAACGGGACCTCCGTCGCCGAGGAGGAGCCGATTCCGCCGGAGCTGCGG TTAGAGCTGATGCCAAAGCATGTGGCGGTGATAATGGACGGGAACGGGAGATGGGCGAAGATGAGGGGGCTGCCACCGTG GGCGGGGCATGAAGCCGGCGTGCGGTCGCTGAAGAGGATGGTGAGGCTGTGCCGGAGCTGGGGGGTGAAGGTTCTGACAG TGTTCGCGTTCTCAACTGATAATTGGGTTCGCCCGAAGTTGGAGGTTGGGTTCCTGATGATGCTATTTGAAAGAACTATA AATTCTGAAGTTGAAGCGTTTAAGAGGGAAGGAATTCGAATATCTGTAATTGGAGATTCATCAAAGCTCCCCAAATCCCT GAAGAGAATTATAACTAGTGCAGAGGAGAGCACCAAGGACAATACCAAACTCCAACTTATTTTGGCGATTAGCTACAGTG GGAAATATGATGTTGTACAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGGCCTTGTTGATTTGGAAGACATAGAT GAAAAAATGATTGAGCAGGAACTGGAAACAAATTGCACTGAGTTTCCTAACCCTGATCTACTAATAAGGACTAGTGGGGA ACTTAGAGTTAGCAACTTCTTGTTGTGGCAATTGGCATACACAGAACTAGACTTTAGTCGAGAACTTTGGCCTGATTTTG GGAAAGAGGAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTATGGTGGACGCCATTCATAA
Protein sequence (LotjaGi1g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLLRLYFPALKQSESLSRFRNKTLLSLMLPFPALPFPSYPVTVTRRSSTMTLPANVAIQGDTNNGTSVAEEEPIPPELR LELMPKHVAVIMDGNGRWAKMRGLPPWAGHEAGVRSLKRMVRLCRSWGVKVLTVFAFSTDNWVRPKLEVGFLMMLFERTI NSEVEAFKREGIRISVIGDSSKLPKSLKRIITSAEESTKDNTKLQLILAISYSGKYDVVQACRSVAKRVKDGLVDLEDID EKMIEQELETNCTEFPNPDLLIRTSGELRVSNFLLWQLAYTELDFSRELWPDFGKEEFVEALNSFQQRQRRYGGRHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 24 | 35 | 12 | - | – | |
| Phobius | 36 | 41 | 6 | - | – | |
| Gene3D | 41 | 308 | 268 | 4.4E-93 | ||
| Phobius | 42 | 317 | 276 | - | – | |
| PANTHER | 56 | 314 | 259 | 2.2E-120 | ||
| PANTHER | 56 | 314 | 259 | 2.2E-120 | – | |
| SUPERFAMILY | 82 | 309 | 228 | 1.06E-81 | ||
| Hamap | 84 | 314 | 231 | 38.596 | ||
| TIGRFAM | 84 | 313 | 230 | 2.3E-85 | ||
| CDD | 87 | 307 | 221 | 2.69074E-126 | ||
| Pfam | 91 | 313 | 223 | 1.6E-77 | ||
| ProSitePatterns | 259 | 276 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0121300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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