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LotjaGi1g1v0121300.1

Overview

Field Value
Gene ID LotjaGi1g1v0121300
Transcript ID LotjaGi1g1v0121300.1
Lotus japonicus genome version Gifu v1.2
Description Alkyl transferase; TAIR: AT5G58770.1 Undecaprenyl pyrophosphate synthetase family protein; Swiss-Prot: sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2; TrEMBL-Plants: tr|A0A0L9VPG9|A0A0L9VPG9_PHAAN Alkyl transferase; Found in the gene: LotjaGi1g1v0121300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19122250..19125350) extracted from Lotus japonicus Gifu genome v1.2.

ATACGATGCCGTTTCAACTACTATCAAGTTACATTCGCACTCACGTTTATAAATTAAGCCGCACTCTTCATTCACACTGC ATTCTGCAATAGCTTAAACCATTCATTTTTGCCTTTGCCAAACAGATAAAATCGTTATCCTAGTTCAGGAATAAGATGCA ATTGTTAAGGCTCTATTTTCCCGCTCTCAAACAATCAGAATCATTATCCCGGTTCAGGAATAAGACACTACTATCGTTAA TGCTACCTTTTCCTGCACTCCCATTCCCTTCTTATCCCGTAACCGTTACTAGACGCAGCAGCACCATGACTCTTCCTGCA AACGTGGCGATTCAAGGTGACACGAACAACGGGACCTCCGTCGCCGAGGAGGAGCCGATTCCGCCGGAGCTGCGGTTAGA GCTGATGCCAAAGCATGTGGCGGTGATAATGGACGGGAACGGGAGATGGGCGAAGATGAGGGGGCTGCCACCGTGGGCGG GGCATGAAGCCGGCGTGCGGTCGCTGAAGAGGATGGTGAGGCTGTGCCGGAGCTGGGGGGTGAAGGTTCTGACAGTGTTC GCGTTCTCAACTGATAATTGGGTTCGCCCGAAGGTCATTGTTGTCAATTTTCTTTTGGTTCTAGCGTCGTGGTTGTTAAT TTTATGTAAGAGCTACATGAATGATTTTATATATTCTTGCAGTTTTGATTTTGTGATGGTTATGTTGGTGCAGTTGGAGG TTGGGTTCCTGATGATGCTATTTGAAAGAACTATAAATTCTGAAGTTGAAGCGTTTAAGAGGTACCAAACTCCCTGACTG CTCTACTGTCTTAACTCTTGATATGTTTAGTTTACTTCATTTAAACAAGTCATTAGATACTCTTAAACAAGGTTTTTTTT TTTAATTTATAGGAGATGTAACTCATAAGAAAAATGATTGTATATGATAGTATGAGAATAAATCATGCCTACTCTTGGAT TTAATCATAAAAATATTTTTCTCACCGTATTTTTCTCTCTATCACTCACTTTTTACCACATCACATTATATAACACATCA ATAACTTCTCTTTTCTATTCTTTTCTCTCTCTAATGTTTATACTACATTTTAGTTAATTTAGTTACAATTCATAATTCAT AAGAGAAAAAATATGATGCACCGACGATGTAAAACTTTTTTTACATCATCAACCAGTTAGATTTCAAGGATGTGTCACGT TAGTTAATAAAATTAAATAAAAAGAGAGATTTTCTCATATTTTGAAATCTAATTAGTTGACGGTGTAAAAAACTTTACAC CATCGATACATAGAAATTAAACTCAATTCATGTCGCTTGTATTTTTTTTTACATTGAACATATCATTGCTCAAGTAATTT TGTTTAAGACATTTGTGGTATGTAAATAAAATAAATAAATGTGTAATAAATTAGTAAACTCATTTTTGAATGGCTTATGG TGATTGGCCCAGTACTGACTTGAGTGACCCACATCACCAATTCATCACCTCAACATGAGTAATGACACACTAAGTTTTTC CATTCAATTTTCACCTTATTTTATATTTACTCTCTTCTTTTAATTTTCTATTATACCATCTTACATCTCATATTTTATCC CTCTTTTCTTTCTATTCTTATCACCCTCCACTTCTTCCCCACAAAAAATGACGTGTCAACAAAACATTATTGCCTCAACA TTGCTCAACTTGAGGAGAAGAAAAATTGTAGGAAATGACAAAATCAATATATTCATGTATTTTCGAGGTTATATTTTTTA TTTTCTCGGGTTTTGATTTATTCTTTGAATTATTTTCCTCTGCATCACATGATGTTAGGAACTTAAAAAAAATGCAATCA TGTGAAAATACGCAAGATATTCGTCCAAATATATATCATACATTGGTGCTAAGATACTATATTAACTAGAAATATGACTA AAATAATATTTATAAAAGATAGAATACCACTTACTTTTAGAGATTAATTTATATGCACCGACGGTGTAAATAAGTTTTAC ACCATCATTCAATCACATCCCTCCATTTTGTTAGTTTACAATTAATTTTGAATTTAAGAATATCTAAAAATAGGAAATGG AAGGCTGTGATTTAATGATGGTGTAAAACTTTTTACACCGTTGGTGCATAGAAATTAATCTCTTACTTTTAAGCAAATTT TTTGGGTAGAACTAATCCAACAAAATTTTAAGGATCGCTGATTCATGACATTTTGTCAAGATCACAACCAAAATTTTCTC TAAATTCTTCTTTGGTTTATTTTATTGTTCCTTATAACAAGTGGTTTCTCAATTAGATATTATTTGGGATCACTTTGTAA TATTTCCTTTTTTAACAGGGAAGGAATTCGAATATCTGTAATTGGAGATTCATCAAAGCTCCCCAAATCCCTGAAGAGAA TTATAACTAGTGCAGAGGAGAGCACCAAGGACAATACCAAACTCCAACTTATTTTGGCGATTAGCTACAGTGGGAAATAT GATGTTGTACAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGGCCTTGTTGATTTGGAAGACATAGATGAAAAAAT GATTGAGCAGGAACTGGAAACAAATTGCACTGAGTTTCCTAACCCTGATCTACTAATAAGGACTAGTGGGGAACTTAGAG TTAGCAACTTCTTGTTGTGGCAATTGGCATACACAGAACTAGACTTTAGTCGAGAACTTTGGCCTGATTTTGGGAAAGAG GAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTATGGTGGACGCCATTCATAAACTATTTGTCTGCA ATATGGTACCTTATAGGTTGGATTTATAATAATTAAGCTTCACAAATATAATTCTTGGCTGCCATATGTTCTAGCTAGGC ATAAGAAATATATGTTATCATGTAGCATATATATATATATATATATGAGAAGGGATTCATTCACTCCAGGAGTAAGTTAA AAAAGCTACTCCCAATCTTGACCCTTTATTTTATTTTAAAATAACGGCTCTGATCAAACCCTATAATCTGTCATGTGACT CCTTCCTCTCCCCAATTCCTCTTGCATTTTCTCGTTCTTCTTGTAAACATCTGGATCAACT 

CDS sequence (LotjaGi1g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATTGTTAAGGCTCTATTTTCCCGCTCTCAAACAATCAGAATCATTATCCCGGTTCAGGAATAAGACACTACTATC GTTAATGCTACCTTTTCCTGCACTCCCATTCCCTTCTTATCCCGTAACCGTTACTAGACGCAGCAGCACCATGACTCTTC CTGCAAACGTGGCGATTCAAGGTGACACGAACAACGGGACCTCCGTCGCCGAGGAGGAGCCGATTCCGCCGGAGCTGCGG TTAGAGCTGATGCCAAAGCATGTGGCGGTGATAATGGACGGGAACGGGAGATGGGCGAAGATGAGGGGGCTGCCACCGTG GGCGGGGCATGAAGCCGGCGTGCGGTCGCTGAAGAGGATGGTGAGGCTGTGCCGGAGCTGGGGGGTGAAGGTTCTGACAG TGTTCGCGTTCTCAACTGATAATTGGGTTCGCCCGAAGTTGGAGGTTGGGTTCCTGATGATGCTATTTGAAAGAACTATA AATTCTGAAGTTGAAGCGTTTAAGAGGGAAGGAATTCGAATATCTGTAATTGGAGATTCATCAAAGCTCCCCAAATCCCT GAAGAGAATTATAACTAGTGCAGAGGAGAGCACCAAGGACAATACCAAACTCCAACTTATTTTGGCGATTAGCTACAGTG GGAAATATGATGTTGTACAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGGCCTTGTTGATTTGGAAGACATAGAT GAAAAAATGATTGAGCAGGAACTGGAAACAAATTGCACTGAGTTTCCTAACCCTGATCTACTAATAAGGACTAGTGGGGA ACTTAGAGTTAGCAACTTCTTGTTGTGGCAATTGGCATACACAGAACTAGACTTTAGTCGAGAACTTTGGCCTGATTTTG GGAAAGAGGAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTATGGTGGACGCCATTCATAA 

Protein sequence (LotjaGi1g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQLLRLYFPALKQSESLSRFRNKTLLSLMLPFPALPFPSYPVTVTRRSSTMTLPANVAIQGDTNNGTSVAEEEPIPPELR LELMPKHVAVIMDGNGRWAKMRGLPPWAGHEAGVRSLKRMVRLCRSWGVKVLTVFAFSTDNWVRPKLEVGFLMMLFERTI NSEVEAFKREGIRISVIGDSSKLPKSLKRIITSAEESTKDNTKLQLILAISYSGKYDVVQACRSVAKRVKDGLVDLEDID EKMIEQELETNCTEFPNPDLLIRTSGELRVSNFLLWQLAYTELDFSRELWPDFGKEEFVEALNSFQQRQRRYGGRHS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 41 41 -
Phobius 1 23 23 -
Phobius 24 35 12 -
Phobius 36 41 6 -
Gene3D 41 308 268 4.4E-93
Phobius 42 317 276 -
PANTHER 56 314 259 2.2E-120
PANTHER 56 314 259 2.2E-120
SUPERFAMILY 82 309 228 1.06E-81
Hamap 84 314 231 38.596
TIGRFAM 84 313 230 2.3E-85
CDD 87 307 221 2.69074E-126
Pfam 91 313 223 1.6E-77
ProSitePatterns 259 276 18 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0121300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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