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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0126000 |
| Transcript ID | LotjaGi1g1v0126000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT4G27590.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|I1JH89|I1JH89_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0126000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19863435..19865756) extracted from Lotus japonicus Gifu genome v1.2.
GAGACACATCCATGCATAAGGACCAGGCTATATATATAATCAAACATAGATTGGTGATTGAAATTGAATGGTGTGTGTGT GAGTTGGGGCAAGTCAGAATGGCTAACATGCAAATTGTCCCTGCTTATAAGAATATTGTGGAGGCACAGTATGTTGAAAT GATGGTTCCCTTGTACTCTTATGGATGTGAGAAGAAAGTAAAGAAAAGCTTATCCCCTCTTAAAGGTAATTAAAACAACT GCTCTGTTCTGGTATAATATAGCTTTCAAATTAAAACTCTAGCTAGCTAATTTGAGCCATCGATGTTAGGAAGATTTTAG CAAATTGTTTCTCAACCTACTCTTGATGATAAATGCATGATAGTTTTTCTCTGTTTTTCATGTTTATATTTTCGGTAAAC AAATTGTTTTGGTTAGTTGTTTATAGTTTAGTGTTTAAGAGTAAATGTGTTAGGTGGGGGATATTAAAATTTTCTAAATC TGTTTATTTGAAATTCACAATTATTGGTATTAGTTTTGGTGACACATCAAAATAGAAATTCTTTATGCATGGATGTTCGT GACTTGAATATGATTGACTCTCGCGAATGAATGATACATGTGCTTGGACGGTAAAAAAACGTGCAACACACACATTTCTA GTTGTGTTTATAATTTTTCTTTTATTTTTTAAACTTTGACACCACTACTGATGAATATAAGGGAGCAAAACAAAAGTTTC TATCAAAAAATTTACAATATTGTGGAGTTTTACCGAGTTATTTTTTTTGTCAAAAGTTTTACTTAGTAGTTACAAAATAT TGGGCCTTAAAATTGCAGAGCATTTAGTTTTGGGTCCATTGAACACATATTGCAGTTGCAGCTATAGTGGACCGGGTGCA ATGACTGGGTATAATTAATTGTCTTCATTTTCTGATGAACATTGCTACAAAAATAATTTGACCAGGAAACAACCAAAAGT AGGATCTATAATTAATCAGCAATAATCTATTAATCATGGAAGTTTCTCAACTACTAATCAATTGGTGCTTTAAGTAGTAC TTGGAAGTTTTTGGATCATACATATATAAGAAACAATTGAGCTAGAGAACAATATTATAAATTGTGTACCAGAAACATTC TTCAGATGTTGAGATCTATTCCCTTTAATTTTTATTGTTTGAGTAACATTAAAACCTTCTTTCAATTTTTCAAGCAAATT GGAAAATTGTAGAGTCAAAAAGAAATGTTACTTGTCTACAGTCCCTTTTATAGACCAAGAATATAAGCCTCAAAAATTCG TTTCATATAACTTTCGGTGACACATTGCTGTGCATAAATAGTGAAGCTCCCTCTTTTTTAGAAAAACTTCCCTTAGCTTC TTAATTTAATTAATTCCAATGTGTTATTCAGTTAAATACATTCATGAATTGTCAACTTAATTAGTTTATTGTTGAATTTA CAGGCATATACTCGGTCAATGTGGATTTCTGTCAACAAAAGGTGACAGTGTGGGGAATTTGCAACAAATATGATGTGCTA GAAACAGTGAGAAGCAAGAGAAAAGGGGCCTGTTTTTGGAACCAAGAAGACAATGTTGTGCTTGAAAATTCACCATCATC ATCTTCACCAACTCCATTACCAGCCATTCCTCACAAGGATTTTAAGCGCTCTTTATCTTTGACTAAGGTCCGGACTCTAA GTTTGAAAGCATGGAAGAAGGTCTTTGCTAGATCTTATTCTTTCTAAAAAGAACAAGTCATCATGTTTGGAAACCCAAAT AAATTCTTGAGGAAAAATCAATTCTGATGAGAAGTTAGCTTATGAATTTTAGAATTAATTCTGAAGAAAGAATAGTTGAT CCAAACATGGTAGTAGTAACAATCGAGCGGCATGTTAAAAATGAGTGTAAATTTAGGAGTGGCTGTGTTCCATGTCTCTG ACTTGTATATATTTTTCAGCTGGTTCTAGCATTTAGGCTATCTATCCTTCCTCTGTTTTGTTTTAAATGTAATGTATTTG AGCTTTAATTCTTCATTGAATCTGATATCAAAACATTATGATGGAGCATCCACACATTACAGCTAGTCTATGCTAAAAAA ACAATCACTTATGGTGCTACATTTGGATTCTTCCTATTTGAGGCAAGTTGTGTTCTTTTGAAGGTTCATTCTTGTTCTAC TGCTTTTACCAACATAATTGTCCTAGGTTGTAGTGAGCTATCTGGGCGGATTTGGATCCTCTCATGTGTAAAAAAACTTG AGAGTGTCAAGTTTTACCATCTTACCATTAACTTTTGTGTAGATAATAAATGAAAAATAAAATTAAATTAAATTAATGGT GA
CDS sequence (LotjaGi1g1v0126000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAAGGACCAGGCTATATATATAATCAAACATAGATTGGTGATTGAAATTGAATGGTGTGTGTGTGAGTTGGGGCA AGTCAGAATGGCTAACATGCAAATTGTCCCTGCTTATAAGAATATTGTGGAGGCACAGTATGTTGAAATGATGGTTCCCT TGTACTCTTATGGATGTGAGAAGAAAGTAAAGAAAAGCTTATCCCCTCTTAAAGGCATATACTCGGTCAATGTGGATTTC TGTCAACAAAAGGTGACAGTGTGGGGAATTTGCAACAAATATGATGTGCTAGAAACAGTGAGAAGCAAGAGAAAAGGGGC CTGTTTTTGGAACCAAGAAGACAATGTTGTGCTTGAAAATTCACCATCATCATCTTCACCAACTCCATTACCAGCCATTC CTCACAAGGATTTTAAGCGCTCTTTATCTTTGACTAAGGTCCGGACTCTAAGTTTGAAAGCATGGAAGAAGGTCTTTGCT AGATCTTATTCTTTCTAA
Protein sequence (LotjaGi1g1v0126000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHKDQAIYIIKHRLVIEIEWCVCELGQVRMANMQIVPAYKNIVEAQYVEMMVPLYSYGCEKKVKKSLSPLKGIYSVNVDF CQQKVTVWGICNKYDVLETVRSKRKGACFWNQEDNVVLENSPSSSSPTPLPAIPHKDFKRSLSLTKVRTLSLKAWKKVFA RSYSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 164 | 135 | 1.8E-55 | – | |
| PANTHER | 30 | 164 | 135 | 1.8E-55 | – | |
| Gene3D | 43 | 108 | 66 | 1.1E-9 | – | |
| SUPERFAMILY | 46 | 111 | 66 | 1.26E-10 | ||
| Pfam | 53 | 89 | 37 | 2.9E-8 | ||
| CDD | 58 | 89 | 32 | 2.93397E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0126000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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