Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0127800 |
| Transcript ID | LotjaGi1g1v0127800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT5G24600.1 TRP-like ion channel protein (Protein of unknown function, DUF599); Swiss-Prot: sp|Q59068|CSX1B_METJA CRISPR-associated protein Csx1 2; TrEMBL-Plants: tr|A0A0B2S6W4|A0A0B2S6W4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0127800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20404344..20406611) extracted from Lotus japonicus Gifu genome v1.2.
GTGACTTATCTATTACCCTTTCTGCTTTGTATTCATTTTGTGTTTATTTGCCTGATGTCTGGCTTTCTATTTGGTTGCTG TCCTGTTTTTACTTTTCTCTATTTGTAGTGCACTCTATTTTGTATTATGGATTGTGGTACCCCTTGTACCTCTATTTATA ATACACATTTGGCTTATCAAAAAAAAATCTATTACCCTATCTTACTCTTAATTTCCATACACACACGGTTGCCCTTGAGT CTTCCATCCGTTTCATCTTTCCAAATATCAGACAAAAATAGGCCACAACAAGGAACCGTGAAAGTAGAATCAGATTCAAT CTCAGAATCGATCCATTTTCTGATCAATTTCTCTATCTCCTTTAATTTCTTTGCACACTTCTCTTTTGGTTGTTGACATA TTGCAAATTAAATGGAAAAGAAAGTGCTTGATTTCATATTGATCCCAAGTGGTCTCCTTGTAATGGTGGCATACCATGTC TGGCTCCTTCACCGGGTGGTGAAGCATCCTACCAAAACCATTATTGGTGTGAATGCATTCAATCGCCGGTTATGGGTTCA AGCTATGATGGAGGTATATATATAGTATATGTGTGTGTGTGTATAGTGGGTGCTAAAAAGTTTCTTCCTTTCACTCTCTT TTGTGTTCAAGTTTGGATTTTGATTCATGGGTTTTGATTTGATTAAATACATATATCGACATATGAATAATTATTTAACA TTGTGATTCAATGAGTAATTGTGTGTATTGATACTAGTTTTTGAGTGCAATATAAACCAATTTTTATTTTATCCTAATCT AAAAGATGAAGTTACATTTAGTTTTTAACTTTGGAAAAAGTTCTAGTGTCAGTTTACACTATTGGCTATGAACGTCTGAA TATAGCTTACGTAAGTATTTGGATGTCAATCAAATGTAACGGAAGAGAACAAATTTTCATTATAATCGAGTTCGATTCAC TTTTTGTGCAAAAATGTCCTAATGTCTGTTTACGTTAGTGTTAACGAATATTTAAGTATAATCGAAAACAGTACTTGAAT TTATGTTTGATAATAGTGCAAATTAACGGTAGCACAAACTTTGACATAGAATCTAATTAGAACCCTTCTTATTCATTGTG ATGAAAGTTCAAACACACTAAGTCTTTTGTCATCATAAAATTGTGATCATGTATTTGCTTATGTATAATAAACTATAAGC TTGTGAAGGTTTGCTTTATGTGACTAATGATCTAAATTTGAAACATTGACATTGATTTCTTCATGTATAAATGTGAAGGA TGCATCCAAGAATGGGGTTCTAGCAGTGCAATCTCTAAGGAACAACATAATGGCATCAACCCTTTTAGCTTCAACAGCCA TAATGCTAACTTCCCTCATTGCAGTACTAATGGGAAGTGGCAGCCAGAGGAAAAGCGTTGTCTATGAAGTCTTTGGAGAC AGAAGCGAACTCGGCTTGTCAATAAAATTCTTCTCAATTCTGGTCTGCTTCTTGCTGGCATTCTTGCTTAATGTGCAGTC CATAAGGTACTACAGCCACGCCACCATCCTCATCAACGTGCCCTTCAAGAAACTGTCTGCGAATCTCCGGCACCAGATGC TGACCGCAGAGTACGTCGCCTCCACGGTGAACAGAGGAAGCTACTTCTGGTCCCTTGGCTTGCGTGCATTCTACTTCTCT TTCCCTTTGTTTATGTGGATCTTTGGACCAATTCCCATGTTCTTTTCTAGTGTTGCTCTTGTTTTCATACTTTACTTCTT GGATGTCACAATGGAGTGTGGATGGGCTGGGGTTGCTGACTCTGATAGTGTTGAGGCTGATTCGGACCACCATCATGTTG ACATGGAAAATGGAAGGTCAAATTAGAAGCTAGTTTGTTGATTAATGTTAATGGTTTAAAAACCAGTTTAGAAACTTGTA CAATTGATTCTGAAGCTAGAATCAATATTCGTGAGTAGCTTTTGAATTTCAGAATTATGTACCAAACAAAAGCTTAGCAT GCTATAAGTGCTTTGCCTTAGTAGCTTAGTATATAGGCTAGCAAAGCTCAAAGATCCAATTCAAAATTCAACACAAGTTG AATTGAATTTGCTTTTGACGTTATGGAATTGAAGTATTTTTGTTTTGCAACGTTGTTTATTATTGATAAATGCTAAATTG AGGTTGCTCTTTGCAGATTGAGTTTCTCCCATTGTCATTTAGATAACCTCTTTTCCAAAACTTTTATTGTTTTAGAAAAT CAAGACATTTTATCTCATTGGATTCCAA
CDS sequence (LotjaGi1g1v0127800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAAAGTGCTTGATTTCATATTGATCCCAAGTGGTCTCCTTGTAATGGTGGCATACCATGTCTGGCTCCTTCA CCGGGTGGTGAAGCATCCTACCAAAACCATTATTGGTGTGAATGCATTCAATCGCCGGTTATGGGTTCAAGCTATGATGG AGGATGCATCCAAGAATGGGGTTCTAGCAGTGCAATCTCTAAGGAACAACATAATGGCATCAACCCTTTTAGCTTCAACA GCCATAATGCTAACTTCCCTCATTGCAGTACTAATGGGAAGTGGCAGCCAGAGGAAAAGCGTTGTCTATGAAGTCTTTGG AGACAGAAGCGAACTCGGCTTGTCAATAAAATTCTTCTCAATTCTGGTCTGCTTCTTGCTGGCATTCTTGCTTAATGTGC AGTCCATAAGGTACTACAGCCACGCCACCATCCTCATCAACGTGCCCTTCAAGAAACTGTCTGCGAATCTCCGGCACCAG ATGCTGACCGCAGAGTACGTCGCCTCCACGGTGAACAGAGGAAGCTACTTCTGGTCCCTTGGCTTGCGTGCATTCTACTT CTCTTTCCCTTTGTTTATGTGGATCTTTGGACCAATTCCCATGTTCTTTTCTAGTGTTGCTCTTGTTTTCATACTTTACT TCTTGGATGTCACAATGGAGTGTGGATGGGCTGGGGTTGCTGACTCTGATAGTGTTGAGGCTGATTCGGACCACCATCAT GTTGACATGGAAAATGGAAGGTCAAATTAG
Protein sequence (LotjaGi1g1v0127800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKVLDFILIPSGLLVMVAYHVWLLHRVVKHPTKTIIGVNAFNRRLWVQAMMEDASKNGVLAVQSLRNNIMASTLLAST AIMLTSLIAVLMGSGSQRKSVVYEVFGDRSELGLSIKFFSILVCFLLAFLLNVQSIRYYSHATILINVPFKKLSANLRHQ MLTAEYVASTVNRGSYFWSLGLRAFYFSFPLFMWIFGPIPMFFSSVALVFILYFLDVTMECGWAGVADSDSVEADSDHHH VDMENGRSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 237 | 237 | 1.9E-118 | – | |
| PANTHER | 1 | 237 | 237 | 1.9E-118 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Pfam | 9 | 218 | 210 | 7.4E-79 | ||
| Phobius | 27 | 70 | 44 | - | – | |
| Phobius | 71 | 92 | 22 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| Phobius | 112 | 131 | 20 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 132 | 190 | 59 | - | – | |
| Phobius | 191 | 215 | 25 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 216 | 249 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0127800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…