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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006747
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.770s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0015379.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 5986087 5989095 -
2 domain predictions
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Lj0g3v0040919.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 13384099 13387814 -
2 domain predictions
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Lj0g3v0040929.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 13384585 13391892 -
2 domain predictions
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Lj0g3v0068549.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 24552521 24554742 -
2 domain predictions
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Lj0g3v0187379.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr0 91408477 91411321 -
2 domain predictions
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Lj0g3v0212869.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr0 107402239 107404248 -
2 domain predictions
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Lj0g3v0330889.1
n.a. Uncharacterized protein TCM_019691 [Theobroma cacao] gi|508712544|gb|EOY04441.1| chr0 172932789 172933880 +
2 domain predictions
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Lj1g3v2035080.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr1 23786880 23789193 +
2 domain predictions
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Lj1g3v4580640.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr1 54723764 54725962 -
2 domain predictions
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Lj2g3v2185510.1
n.a. Uncharacterized protein TCM_015546 [Theobroma cacao] gi|508776492|gb|EOY23748.1| chr2 32802394 32804482 +
2 domain predictions
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Lj4g3v3113960.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr4 41841393 41844162 -
2 domain predictions
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Lj4g3v3113980.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr4 41844846 41851466 -
2 domain predictions
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Lj4g3v3113980.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr4 41848161 41851466 -
2 domain predictions
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Lj5g3v0963210.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773891|gb|EOY21147.1| chr5 14889963 14890973 -
2 domain predictions
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Lj6g3v2006450.2
n.a. NB-LRR type disease resistance protein [Medicago truncatula] gi|357446783|ref|XP_003593667.1| chr6 23504829 23512287 +
2 domain predictions
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LotjaGi1g1v0127800.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT5G24600.1 TRP-like ion channel protein (Protein of unknown function, DUF599); Swiss-Prot: sp|Q59068|CSX1B_METJA CRISPR-associated protein Csx1 2; TrEMBL-Plants: tr|A0A0B2S6W4|A0A0B2S6W4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0127800 LjG1.1_chr1 20404344 20406611 -
2 domain predictions
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LotjaGi1g1v0397700.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q981V0|ARLY2_RHILO Argininosuccinate lyase 2; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 LjG1.1_chr1 88423368 88425857 +
2 domain predictions
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LotjaGi1g1v0397700.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 LjG1.1_chr1 88423567 88425561 +
2 domain predictions
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LotjaGi1g1v0457500.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT5G43180.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9TM34|RPOC2_CYACA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|I3SKX7|I3SKX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0457500 LjG1.1_chr1 96082130 96083454 +
2 domain predictions
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LotjaGi2g1v0169000.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9HH76|UPPS_SULAC Tritrans,polycis-undecaprenyl-diphosphate synthase (GGDP specific); TrEMBL-Plants: tr|I1NIF3|I1NIF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0169000 LjG1.1_chr2 58197617 58201185 -
2 domain predictions
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LotjaGi2g1v0169200.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P10747|CD28_HUMAN T-cell-specific surface glycoprotein CD28; TrEMBL-Plants: tr|A0A072UA46|A0A072UA46_MEDTR Plant/F12B17-70 protein; Found in the gene: LotjaGi2g1v0169200 LjG1.1_chr2 58224697 58228370 -
2 domain predictions
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LotjaGi4g1v0023900.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|A8ZUA0|ATPG_DESOH ATP synthase gamma chain; TrEMBL-Plants: tr|I3STV9|I3STV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0023900 LjG1.1_chr4 2937738 2943305 +
2 domain predictions
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LotjaGi4g1v0460500.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q65Z91|TSK_CHICK Tsukushin; TrEMBL-Plants: tr|G7LCF1|G7LCF1_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi4g1v0460500 LjG1.1_chr4 83127424 83130224 -
2 domain predictions
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LotjaGi4g1v0460600.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P0CM47|PALA_CRYNB pH-response regulator protein palA/RIM20; TrEMBL-Plants: tr|I3STV9|I3STV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0460600 LjG1.1_chr4 83134378 83135762 -
2 domain predictions
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LotjaGi4g1v0460600.2
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P0CM47|PALA_CRYNB pH-response regulator protein palA/RIM20; TrEMBL-Plants: tr|I3STV9|I3STV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0460600 LjG1.1_chr4 83134509 83137383 -
2 domain predictions
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LotjaGi5g1v0047400.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase; TrEMBL-Plants: tr|I3SYH7|I3SYH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047400 LjG1.1_chr5 7970950 7976635 +
2 domain predictions
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LotjaGi5g1v0047400.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase; TrEMBL-Plants: tr|I3SYH7|I3SYH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047400 LjG1.1_chr5 7971098 7973183 +
2 domain predictions
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LotjaGi5g1v0197800.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q90953|CSPG2_CHICK Versican core protein; TrEMBL-Plants: tr|V7BDL9|V7BDL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0197800 LjG1.1_chr5 49403417 49416084 +
2 domain predictions
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LotjaGi5g1v0197800.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|A3CWL3|COFC_METMJ 2-phospho-L-lactate guanylyltransferase; TrEMBL-Plants: tr|V7BDL9|V7BDL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0197800 LjG1.1_chr5 49403795 49410526 +
2 domain predictions
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LotjaGi6g1v0219600.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q6AMN0|F16PC_DESPS Fructose-1,6-bisphosphatase class 3; TrEMBL-Plants: tr|I3T9D7|I3T9D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0219600 LjG1.1_chr6 52300399 52306795 +
2 domain predictions
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LotjaGi6g1v0219600.2
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q8MI05|KLRF1_MACFA Killer cell lectin-like receptor subfamily F member 1; TrEMBL-Plants: tr|I3T9D7|I3T9D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0219600 LjG1.1_chr6 52300399 52306795 +
2 domain predictions
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LotjaGi6g1v0327300.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT5G46060.1 spastin, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9LPZ3|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410; TrEMBL-Plants: tr|I3SHH2|I3SHH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0327300 LjG1.1_chr6 64238291 64239253 +
2 domain predictions
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LotjaGi6g1v0327300.2
n.a. transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT5G46060.1 spastin, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9LPZ3|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410; TrEMBL-Plants: tr|I3SHH2|I3SHH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0327300 LjG1.1_chr6 64238291 64239253 +
2 domain predictions
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