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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0131700 |
| Transcript ID | LotjaGi1g1v0131700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21115042..21119504) extracted from Lotus japonicus Gifu genome v1.2.
GGATGACAATGGGTAGGGTCTGGGTAAGGTATTATAGTACTCATCCCATACCCGCGTTTTCAAAAATTACCCGTACCCGC CCCCATACCCGCGTGGGTAGCAACTTAAATGCTTGTCCCCAGGGGCGGACCCACAGCCAAGTCAGGGGTTGAGATGAACC CCTTGAAAAAAAAATTTCTACTTACCCCCTTGTATTGTTTTTTTTTGAACCCCCTGAGATTTATATTTGCACCTAGACCC CACTTACTCCTCCCTCTCTCTCTCTCACTCACGATTCACGCTCTCACCCTCTCGCACTCTCACTAGGTCTGGCCGTCATC ACCGCACGGCGCACCACCACCACGCCACGCCACGCCACGCCACCACCGTCCACCAGTCCAGCCGCCCCTCTGCGGCTCTA CCCTAGGTCTGATTGATTTCCCGAAACTTAAATCTAAGTGTTTTTGTTCTCTCGCCCAACGTACCCGTCGCGCCGTTCGC CGCGCCTCCGAGGCTCCACCGCGCCATGCCAGACTTCCGCGCCTCCTAACACCCACCGCCTTGTGTCGCGCCACTCTCCT CTTTTCACTCAGGTAACGCTCTTCTCTCGCTCACCCGTCCTCTGCTTTCCACGTTTGGCATTGAGAATTGTTTAGTATTC AATTTTCAGAACTCTCAGCTAGTAATCATGGAAGCCCCATTATGAACAAGTGGTTGCTGTTTCAAAATCCCTTACGATTT AAGTTTCGCAATTTATGATCCAATTTTTAATTGTTCTGTTCACAATTTCTGATTTGATTTTTACTTGTTTAATTATCATG CATCTCATACAGTTTTTACTGCTTTTCAGGCATCATTTGGTGAAGAAACTTTAACATTTGGTGAAGAGCCCTTTTTCCTG TTATTGTAATGAACTTTGTTTCCATTTTGATGTTGTTATAAAAAATTTCTTTCAATATGACGAGTGAATTGTAAAATGGT TGTTGCTTAATTTTACAAGTTAATTTTAGTTTTGTGTACAGCCAATGAATTCTTCCAATGCCCTGCTTTGCTTATCTATT GAATTTTTTTGGAGACAGGATACTACAATTCTGCCAATACCTGTGATTAAACTTCGCTGTTGAACTCTTTGGTTAGCATT GAAATTTATTGATGTTGAATCTGAAACTATATTATTTGCTATATACAGTCCATCATTCAGGAACTATAAGTGACATTCTT GTGGAAGATGGAAAACCTCAGCCCCCATTTGTGATTGAACCATAGAGATTTGAAGTTGAGCTTCCACTTTGTAATCTGAT TGAGTTGTATAATTTTTGTTTTTCTTACTCATATCCTTCAGTATTTTGAACTTTCGGTGTTTTACTTTCATGTAAAAGAT CCCATAAAACTTGATCATTATATAGTTCCATTGATGCTTTGTATTCCACTATTCATCCCGAGAAAGAGTGTATGTTAGTT CCATTGATGCTTAGTGTTCCTCCTATGTAAAGTGTGTTTGTTAGTTACTTACATTGAAAGTGATGTATTCAATAACATTG ACTCTGAGCTTGTTGTTCAACGATTTCAGAATATGAAATCGTGTAGAGGACAACTATGATTTGTATAATTTATGATGTAT AAACATATTACAGTTGTTTTTAATTATATTTATATTGATGTGCTCATTTGAAAAATTTGAACCACTGACCCCGGGGTCCT GGATCCGCCACTGGCTGCGGCGTAGGGGCAGAATATATTGTAGAATTCGTTTGGTGGTTTGGGTTATAGGGTTCAGATGG TGAAATGCAATTGGTGTATGTTTCTCTGTTTTATTTAGGTGATAATTTGTTCAATTGCTCTTAATTTAGTGAAAGAAATA TGATGCTCATATATGCTGTTACCATTGTTGTTTTGAATTACTGTTTGGCTTTTTCAATCTGTTATGTCCAGGTGATAGGT TTGCGTGGAAGGGAAGTGTGATTAGAGACTGTTGTGAGACAGAATTGGGTAGTGGATAAAACCAGACGAGGGGAGAGGGG AAGGTTAGTGAGGTTTCAGACAATAGAAAGTTATCCCTTGAAACTGCTTGCAGTGTCTCTGCATTGCTTTTTCTTTGGTA GTGTGGGTTTGGTCTCATGATCAGGTTCTTCAAGCATTAAAGAAGCATGCTTCCTCTATGTTGTCATCTTTTGATAAAAT CAATGCAGATATAATTTGAATCGTATGATTCCTGTATAAATAAGAGCTACGTTTAGCTTATAACCAGTGATTGAAAAATT ATGTGATGAGGTTTTAACAATTTGATAATTTTTTATAAATGTACATGCAGTTAATTATGAAAAATTGACATTCTTATTCC TCGACTGGAGTTTTAAATTGAATATTTCCCCTTTGTTTTCCTTGTTACAGAAGTGCAGTTTTCTTTTTCAATTTGTAAAA TCTGTTCTGTTATTACTTGCAATCTCAAAGGTACAAAAAGTTAAATATACCAACAAAAAAATCAGTTTCTTGTTCTGTAT ATAAATTTGTCCATGAATTTTTTTCAGTGCATGTGTCTTTTCTACATGAGAAATGATGCTGCCAAGACATGTTCAAACTG TTGGCTATATGCTTGAGAGAGTTATTCCTGTGGCACAGCTTAGAGGTATAAATACACATTTTTGTGTTTGGTACTCAACT GTGTCAGCTTGCAATGAGCTTCCAAGAAAGTTCAAAATGTCTGAGAGGAAACCACTGGTGACAAGTTTTAATGAACTAAA GCGCGAAGCTAGACGGAAGAGAAAGGAGAGACAAAGTGTGCATGAGATTGTTTTACAACCTCCTGAAAATGGCTTGTTGG TTAAGCAATTAATTCCTATTGCTCATGAAGTATATGCTGCCAGATCTGAACTATTGTCGAGTGTTTCAAGACTTGTCAAG CACATTGCTATTTATACATGCAGGTAAGACCATAACCTCTGTATCCTTTATTTTGGTTATTTGAGCTTTTAGCATGCTGC AAGCTGAACTTCTATTTAAGTATGATACTGTATTCCAACTAGAAGTATTTTTTCTTGTTATTTTATTTTATCTGGTTTTA TTGGAATTGGCAACTTGCAGCTAAGCGATATAATATGATATTTTAAATGTATACTGGGTTGGGTATAAAAGGATTTCTTA ATGTGAATTGGAGCTATTCTAAGTGGGTAATGTGTACTGATCTCCTAACTTGAGATTTGGAATGCCTTGCAGCTTATGTG GAGATGTTCATGTTGGTCATCCACCACATATTATTAGAACATGTAATGTTAGAGGAAGCCCATCAAGCAAAGAACATAGT TGGGTCAAAGGAGGTATTGGTCATGTACTGCCACTTGTAGAGTCATTTCATTTGTATGATAGAATAGGGAGGGCTGTTTC ACACAATGAAATGCTTGAAGTGGACCGAATTCCAGCCATTGTTGAATTGTGTATCCAGGCAGGTTTTGACATACCTGAGT ACCCTACCAGGAGAAGGGCCTTCCCTGTTTATTGTGTTGCTGGTAGGATAATTGATTTTGAGAAAAGATTTCCAAAAGAA TTTCACTTGGCAAAGATATAGATGCATGTGGGTTTTGGTGTAATAAGAAGAGATTGAATGAAGACACCAATTCGTTAGCA ATGCACGGTGATGATATTCAAGGTTTATGAAGACAAAATACTTTTTTCTTCTTTTTCTCATTCTCTTAGACAAACACACA CAGGCAATGCATTACACATTCTTCCTTTGTCAACTTTCTTACTATCTACATGCTTCCTTGCAGCTATTGCTGTCCAAGGC ATGAAAGCCTGGGAGAAAATGTGCTCAGGAGCTTCAAAACTTATGGACACATATGCTGTCCAAACATGTGGATATTGTCC AGAGGTACAAGTAGGACCTAAAGGTCACAGAGTACGAAATTGTCAAGCTTTCAAACACCAGATGAGGGATGGGCAGCATG CATGGCAGGAGGCTACAATTAATGATTTGGTACCTCCTGTATACGTCTACCACATTGGAGATCAGCAATCTGGGAAGCCT TTGGTACATGAGCTTAAAAGGTACTACGGTATACTGCCTGCGGTGGTTGAGCTATTTGCACAGGCTGGGGCGACAGTTGA AAAGAATTATGCACATTCAATGAGGGAAGATGTTGTTGTCCCTGAAATGGATGAGGAAAAGTTGGTTGTTTAAATCAATT GGTTGAATGACTTCCTATGAATGGAGGAACCATTGAGATCTGGAAGAGGCTAAATATTAAAAATTAAGCTTTAATTTCTT TCAAATAGTAACAAATTGTTTGTGCTGGGAAAGAAGATGAAGGATGTGTAATTTGGTTATTAGGATAGTAGTAGGATGTG AATAAGAGAGAAAATTGGAATAAACAATCTAGTGTTCTGTTGGCAACTTAAGGGGTTGTCTTGATTATATGAAACACTTC TGTTTGACACGCACCGGAGACCAATAAACTTGGATTCCTTTGTTGAGAACATGTCTTTATCCC
CDS sequence (LotjaGi1g1v0131700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGGTGATGATATTCAAGCTATTGCTGTCCAAGGCATGAAAGCCTGGGAGAAAATGTGCTCAGGAGCTTCAAAACT TATGGACACATATGCTGTCCAAACATGTGGATATTGTCCAGAGGTACAAGTAGGACCTAAAGGTCACAGAGTACGAAATT GTCAAGCTTTCAAACACCAGATGAGGGATGGGCAGCATGCATGGCAGGAGGCTACAATTAATGATTTGGTACCTCCTGTA TACGTCTACCACATTGGAGATCAGCAATCTGGGAAGCCTTTGGTACATGAGCTTAAAAGGTACTACGGTATACTGCCTGC GGTGGTTGAGCTATTTGCACAGGCTGGGGCGACAGTTGAAAAGAATTATGCACATTCAATGAGGGAAGATGTTGTTGTCC CTGAAATGGATGAGGAAAAGTTGGTTGTTTAA
Protein sequence (LotjaGi1g1v0131700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGDDIQAIAVQGMKAWEKMCSGASKLMDTYAVQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPPV YVYHIGDQQSGKPLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVVVPEMDEEKLVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 143 | 142 | 2.0E-84 | – | |
| PANTHER | 2 | 143 | 142 | 2.0E-84 | – | |
| Pfam | 8 | 126 | 119 | 5.9E-27 | ||
| ProSiteProfiles | 35 | 121 | 87 | 26.793 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0131700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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