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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023342
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.840s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0204759.1
n.a. PREDICTED: APO protein 3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163408|ref|XP_004512831.1| chr0 101696622 101697472 +
3 domain predictions
1 GO term
Lj0g3v0350839.1
n.a. PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| chr0 184426109 184427830 -
2 domain predictions
1 GO term
Lj1g3v0052280.1
n.a. PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| chr1 431040 433376 -
3 domain predictions
1 GO term
Lj1g3v0052280.2
n.a. PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| chr1 431040 433376 -
3 domain predictions
1 GO term
Lj1g3v2373570.1
n.a. PREDICTED: APO protein 4, mitochondrial-like isoform X1 [Cicer arietinum] gi|502083201|ref|XP_004487390.1| chr1 27963358 27966440 +
3 domain predictions
1 GO term
Lj2g3v0510100.1
n.a. PREDICTED: APO protein 1, chloroplastic-like [Glycine max] gi|356559935|ref|XP_003548251.1| chr2 6873284 6876824 +
3 domain predictions
1 GO term
Lj2g3v2326310.1
n.a. PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356498974|ref|XP_003518320.1| chr2 33670143 33673155 +
3 domain predictions
1 GO term
Lj3g3v1340130.1
n.a. PREDICTED: APO protein 4, mitochondrial-like isoform X1 [Cicer arietinum] gi|502083201|ref|XP_004487390.1| chr3 17284157 17286510 +
3 domain predictions
1 GO term
Lj6g3v1077810.1
n.a. PREDICTED: APO protein 2, chloroplastic-like isoform X2 [Cicer arietinum] gi|502085335|ref|XP_004487893.1| chr6 12604776 12608145 +
3 domain predictions
1 GO term
LotjaGi1g1v0115800.1
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1JHG6|I1JHG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0115800 LjG1.1_chr1 18172014 18177698 +
3 domain predictions
1 GO term
LotjaGi1g1v0131700.1
n.a. APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131700 LjG1.1_chr1 21114646 21119295 -
3 domain predictions
1 GO term
LotjaGi1g1v0131700.2
n.a. APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131700 LjG1.1_chr1 21115042 21119504 -
3 domain predictions
1 GO term
LotjaGi2g1v0073700.1
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 LjG1.1_chr2 19228220 19232277 -
3 domain predictions
1 GO term
LotjaGi2g1v0073700.2
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 LjG1.1_chr2 19228229 19232277 -
3 domain predictions
1 GO term
LotjaGi2g1v0073700.3
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 LjG1.1_chr2 19228351 19232047 -
3 domain predictions
1 GO term
LotjaGi2g1v0073700.4
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 LjG1.1_chr2 19228693 19229898 -
3 domain predictions
1 GO term
LotjaGi2g1v0162600.1
n.a. APO protein; TAIR: AT1G64810.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic; TrEMBL-Plants: tr|I1MQ97|I1MQ97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0162600 LjG1.1_chr2 56879779 56883769 +
3 domain predictions
1 GO term
LotjaGi2g1v0459100.1
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 LjG1.1_chr2 95239321 95241846 +
3 domain predictions
1 GO term
LotjaGi2g1v0459100.2
n.a. APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 LjG1.1_chr2 95239364 95241755 +
3 domain predictions
1 GO term
LotjaGi2g1v0459100.3
n.a. APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 LjG1.1_chr2 95239370 95241765 +
3 domain predictions
1 GO term
LotjaGi3g1v0190900.1
n.a. APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 LjG1.1_chr3 27647645 27651069 +
3 domain predictions
1 GO term
LotjaGi3g1v0190900.2
n.a. APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 LjG1.1_chr3 27647823 27649551 +
3 domain predictions
1 GO term
LotjaGi3g1v0197800.1
n.a. APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|A0A151R7A7|A0A151R7A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197800 LjG1.1_chr3 28967751 28974198 +
3 domain predictions
1 GO term
LotjaGi3g1v0197800.2
n.a. APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|A0A151R7A7|A0A151R7A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197800 LjG1.1_chr3 28967751 28974198 +
3 domain predictions
1 GO term
LotjaGi6g1v0202800.1
n.a. APO protein 2; TAIR: AT5G57930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSI8|I3SSI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202800 LjG1.1_chr6 50000995 50004785 +
3 domain predictions
1 GO term
LotjaGi6g1v0202800.2
n.a. APO protein 2; TAIR: AT5G57930.2 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSI8|I3SSI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202800 LjG1.1_chr6 50002342 50004189 +
3 domain predictions
1 GO term