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IPR023342 is a APO domain.
<p>This entry represents the APO domain which is found in plant APO (Accumulation of photosystem) proteins. The domain contains conserved cysteine and histidine residues [[cite:PUB00054221]]. It functions as an RNA-binding domain [[cite:PUB00057416]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: APO protein 3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163408|ref|XP_004512831.1| | 5 | ||
| – | PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| | 4 | ||
| – | PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| | 5 | ||
| – | PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356537256|ref|XP_003537145.1| | 5 | ||
| – | PREDICTED: APO protein 4, mitochondrial-like isoform X1 [Cicer arietinum] gi|502083201|ref|XP_004487390.1| | 5 | ||
| – | PREDICTED: APO protein 1, chloroplastic-like [Glycine max] gi|356559935|ref|XP_003548251.1| | 5 | ||
| – | PREDICTED: APO protein 3, mitochondrial-like [Glycine max] gi|356498974|ref|XP_003518320.1| | 5 | ||
| – | PREDICTED: APO protein 4, mitochondrial-like isoform X1 [Cicer arietinum] gi|502083201|ref|XP_004487390.1| | 5 | ||
| – | PREDICTED: APO protein 2, chloroplastic-like isoform X2 [Cicer arietinum] gi|502085335|ref|XP_004487893.1| | 6 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1JHG6|I1JHG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0115800 | 6 | ||
| – | APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131700 | 5 | ||
| – | APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131700 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 | 5 | ||
| – | APO protein; TAIR: AT1G64810.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic; TrEMBL-Plants: tr|I1MQ97|I1MQ97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0162600 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 | 5 | ||
| – | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 | 5 | ||
| – | APO protein 2; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0S3SUP6|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100 | 5 | ||
| – | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 | 5 | ||
| – | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 | 5 | ||
| – | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|A0A151R7A7|A0A151R7A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197800 | 11 | ||
| – | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|A0A151R7A7|A0A151R7A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197800 | 5 | ||
| – | APO protein 2; TAIR: AT5G57930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSI8|I3SSI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202800 | 6 | ||
| – | APO protein 2; TAIR: AT5G57930.2 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSI8|I3SSI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202800 | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| PTHR10388:SF15 | PANTHER | 1 | 3.85 |