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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0135700 |
| Transcript ID | LotjaGi1g1v0135700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q8N7C3|TRIMM_HUMAN Probable E3 ubiquitin-protein ligase TRIML2; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21999751..22001651) extracted from Lotus japonicus Gifu genome v1.2.
GTCATCGACCATCAAGTCTCTATTGTTTAACAAAAGAATTGAAAAAATGATCAATATTTTATTCTTTGTATGTTGTTTGG TGGCTAGCAGTGCTAACCAAAGAGTTGATGGCATGCAAAATACATTACAAGAAGAGTTGGAGTTGGAGACACAATTAAAA CTTATTAACAAGCCTCCTGTTAAAAGTATTAAGGTATACCAGCTCGCCCTCATATATATGTATTTGCTTATTTTTGTTCT ATTTCATATTTGAACTCACTGCATGTTTTCAATAATTTAAGTTTAATAATTTTTTTTTCTGAATCTTGGTTTCAATAGAC AAAATTTGGATATATTGTTGATTGTATTGATATTAACAAGCAACCGGCATTTGATCATCCTTTATTAAAGAATCATAAGT TGCAGGTAAATACATTAAGTCTAATTAAATGTGGCAAATTTTAGTCATCTTTCGATTATTAAAATTCTTTGTTTTTTCTT TAATGTAGAGAAAACCTAACAATAAAAAAAAGATTGGAAATCCCAATTTGAGGAATTCACTATCGAAACTCAAATTTGGA CTTGAGAAACCATGTCCAAAAGGAACAGTTCCTCTTCGGAGGACAACAAAAAACGATCTCATTGGAGCTAAATCATTACT AGATAACCAAGTTTTGGCACAACAAAGACCTGGATATCATTCTCATGTAAGTTTTCTTTGAATATAAAATATTCTTTTTT ATTACTTTATTAAATTACGTACATATAATTATTTGATTAAAATGATGATGTAAAATTTATTGAATTAATAGGTTGCTGAG GTACACATCAATCCCCTTGGAACTTATTATGGTGTTAATGGAACTACTAGCGTTTGGCAACCAATTGTTGAAAAGGATCA ATCAAGCGCCGCTTTTACATGGGTTCGAAATGGACCATTAAATGCAACAAATGAAATTGATTTTGGGTGGCATGTGAGTT TAATCTATGCATTTATCACCATAGTTTTTTTTTCCTGAAAATTTGTATGCATGTATGACTTGTTAATTCAATACAAAAAT CACTTGCTAATTTGTCTCACACATTGGTGTAAGGTGGCTCCACAACTATACAATGGTGATGTTGGAACGCATTTATTCGC ACAATGGACGGTAGGAAAATTTTCAATTTTATTTTTGAATCTTGCTCAGTTGCTTTTCATTTAAAAATAAATTCATAAAT CATCTCCTAGAAATTTTAACATAATATTATAAAATGACAGAGAGATACTTTCCAAAAGACAGGATGCTACAATGTGCTAT GTTCAGGTTATATGCAAACTGATCCAAGACATTATCTTGGTGAACGTTTGCATCCCACATCTGTACCGGATGGAGACTTA TATGAGATTCACATTGCGATTGTCCAGGTGATGAATGTTATTAATTATTAATACAATTCACATAAGCTTAAAATATATTC AATTTTCTAACAATGAATTACAATGTAAATATAATGTTATATGTATCAGGACATAGTTACCAGAAATTGGGTGTTGAATT TTAATGGGATAGATATTGGATATTTTCCAGCCGATTTATTCACTAACTTGGCATCAGCAAACCAAGTGGGATGGGGTGGT AGTACAACAACTCCTGCAGGTACTCCTAGTCCTCCAATGGGGTCCGGATTATTTCCAAACCATAAGACACATAGTGCCTG TTATTTTAGGTGGGTGTCATATAAAAATGAGAACCAAATTTTTTATGACACAAGAGATAATGTGACAGAAGCATTCACAG ACAAGCCCAATTGCTATGGTGCTAAATTCTATGGATATGAGAAAGATATTGGATCTATTCTTCAATTTGGTGGACCTGGA GGCCAATGTGACAATTGATTCATAATTCTTTTTTGGTAACATACATAATATTTGATCAACC
CDS sequence (LotjaGi1g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAATATTTTATTCTTTGTATGTTGTTTGGTGGCTAGCAGTGCTAACCAAAGAGTTGATGGCATGCAAAATACATT ACAAGAAGAGTTGGAGTTGGAGACACAATTAAAACTTATTAACAAGCCTCCTGTTAAAAGTATTAAGACAAAATTTGGAT ATATTGTTGATTGTATTGATATTAACAAGCAACCGGCATTTGATCATCCTTTATTAAAGAATCATAAGTTGCAGAGAAAA CCTAACAATAAAAAAAAGATTGGAAATCCCAATTTGAGGAATTCACTATCGAAACTCAAATTTGGACTTGAGAAACCATG TCCAAAAGGAACAGTTCCTCTTCGGAGGACAACAAAAAACGATCTCATTGGAGCTAAATCATTACTAGATAACCAAGTTT TGGCACAACAAAGACCTGGATATCATTCTCATGTTGCTGAGGTACACATCAATCCCCTTGGAACTTATTATGGTGTTAAT GGAACTACTAGCGTTTGGCAACCAATTGTTGAAAAGGATCAATCAAGCGCCGCTTTTACATGGGTTCGAAATGGACCATT AAATGCAACAAATGAAATTGATTTTGGGTGGCATGTGGCTCCACAACTATACAATGGTGATGTTGGAACGCATTTATTCG CACAATGGACGAGAGATACTTTCCAAAAGACAGGATGCTACAATGTGCTATGTTCAGGTTATATGCAAACTGATCCAAGA CATTATCTTGGTGAACGTTTGCATCCCACATCTGTACCGGATGGAGACTTATATGAGATTCACATTGCGATTGTCCAGGA CATAGTTACCAGAAATTGGGTGTTGAATTTTAATGGGATAGATATTGGATATTTTCCAGCCGATTTATTCACTAACTTGG CATCAGCAAACCAAGTGGGATGGGGTGGTAGTACAACAACTCCTGCAGGTACTCCTAGTCCTCCAATGGGGTCCGGATTA TTTCCAAACCATAAGACACATAGTGCCTGTTATTTTAGGTGGGTGTCATATAAAAATGAGAACCAAATTTTTTATGACAC AAGAGATAATGTGACAGAAGCATTCACAGACAAGCCCAATTGCTATGGTGCTAAATTCTATGGATATGAGAAAGATATTG GATCTATTCTTCAATTTGGTGGACCTGGAGGCCAATGTGACAATTGA
Protein sequence (LotjaGi1g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINILFFVCCLVASSANQRVDGMQNTLQEELELETQLKLINKPPVKSIKTKFGYIVDCIDINKQPAFDHPLLKNHKLQRK PNNKKKIGNPNLRNSLSKLKFGLEKPCPKGTVPLRRTTKNDLIGAKSLLDNQVLAQQRPGYHSHVAEVHINPLGTYYGVN GTTSVWQPIVEKDQSSAAFTWVRNGPLNATNEIDFGWHVAPQLYNGDVGTHLFAQWTRDTFQKTGCYNVLCSGYMQTDPR HYLGERLHPTSVPDGDLYEIHIAIVQDIVTRNWVLNFNGIDIGYFPADLFTNLASANQVGWGGSTTTPAGTPSPPMGSGL FPNHKTHSACYFRWVSYKNENQIFYDTRDNVTEAFTDKPNCYGAKFYGYEKDIGSILQFGGPGGQCDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 2 | 386 | 385 | 6.8E-153 | – | |
| PANTHER | 2 | 386 | 385 | 6.8E-153 | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 388 | 372 | - | – | |
| Pfam | 47 | 129 | 83 | 7.0E-23 | ||
| Pfam | 164 | 382 | 219 | 1.5E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0135700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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