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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0135900 |
| Transcript ID | LotjaGi1g1v0135900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G07540.1 Actin-binding FH2 (formin homology 2) family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A1J3CNN0|A0A1J3CNN0_NOCCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0135900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22097863..22099456) extracted from Lotus japonicus Gifu genome v1.2.
AGATGTGGAGTCTGGTGAATGAAGGGATTCCGGTATTGGAAACTAGGACAACACCAGCGAGTGAGGAGAAAAAGAAGGCC GTGGAGGAGGCCAAGCTCAAAGATCTCAAGGTTAAGAACTATTTGTTCCAGGCAATTGGTAGAGAAATCTTGGAAACAAT TCTTGACAAGGAGACGTCGAAGGCAATCTGGAACTCAATGAAACAGAAGTATCATGGGTCCAAAAAGGTGAAAAGGGCAC AACTTCAAGCATTGAGAAGGGAGTTTGAGTTGCTTGCCATGAAAGAAGGAGAAAAGGTAGACAACTTCTTGGGGAGAACC TTGACTGTGGTAAACAAGATGAAATCAAATGGTGAGACAATGGAGCAGAGTACAGTGGTCAGTAAGATACTTAGATCATT GACTTCCAAGTTTAATTATGTTGTTTGTTCGATAGAGGAATCAAATGATTTAAGTATCTTGAGCATTGATGAATTGCATG GAAGTCTGCTTGTTCATGAACAAAGGATGCAAGGACACCAAGAGGAGGAACATGTCTTGAAAGTGGCTCAAGAAGATAGG TCCAGCAGAGGAAGAGGTCGAGGTGCACCTAGAGGAGGATGTGGCAGAGGTAGAGGGAGACAACTTCTAAATATAGAGGT TATTTAATGTTACAAATGCCATAGGTTGGGACACTTTCAATATGAGTGTTCTGATTGGGAAAAGAAAGTAAATTATGCTG AGTTGGAGGAAGAAGAGGAGCTTCTACTGATGGCCTATGCAGAACTCCATCAAACAAAGAAAGAAGAGGTATGGTATCTT GACTCAGGATGCATCAATCACATGATAGGAAACAAAGAATGGTTCTTGGATCTGGAAGAAGATTTCAGTCGGACGGTAAA GCTTGGGAATGATACGAGAATGGCAGTGGTAGCAAAAGGAAGTATACGTATGCAATCGAATGGCATAACCCAAGTAATAT CTGATGTATAATACATTCCTGAGCTTAAGAACAATTTATTAAGCATAGGACAACTTCAAAAGAAGGGGTTAGCCATTCTG ATTCAGGATGGAACTTGCAAAGTATTTCATCCTAGGAGAGGGGTGATTATGCAGACTGATATGAGTGGGAATAGAATGTT CTTTCTGTTAGCTTCCATGGCACCAAAGAGGTCTATGTGTCTTCAAGCTGAAGCTGTCTCGCAGAAAGAAGCACACATGT GGCATTGTCGTTTTGGGCATCTGAATCACAAGGGGCTTAGAACACTTTCGCACAAGAAGATGGTGGTTGGTTTACTCTCT TTGGAGTCTCCAGAGAAGATATGCACTACATGTTTAACCGGAAAGAAACATAGAGAGCCTGTGCCAAAGAGGAGCTTGCG GAGGGCGTTAAAACAGTTGTAGTTAGTGCATTCAGATATATGTGGTCCTATCAAGCCATCTTCGAGCAGTAACAAGAGGT ACATCTTAAGTTTTATAGATGATCATACTCGGAAGACTTAGGTTTATTTCTTACATGTGAAGTCAGAAGCTTTTGTTAAA TTCAAAGAGTATAAGGCTGGTGTTGAAAAGGAGATATGCGCACACATAACTTGCTTGTGTACAGATAGGGGTGG
CDS sequence (LotjaGi1g1v0135900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGTCTGGTGAATGAAGGGATTCCGGTATTGGAAACTAGGACAACACCAGCGAGTGAGGAGAAAAAGAAGGCCGT GGAGGAGGCCAAGCTCAAAGATCTCAAGGTTAAGAACTATTTGTTCCAGGCAATTGGTAGAGAAATCTTGGAAACAATTC TTGACAAGGAGACGTCGAAGGCAATCTGGAACTCAATGAAACAGAAGTATCATGGGTCCAAAAAGGTGAAAAGGGCACAA CTTCAAGCATTGAGAAGGGAGTTTGAGTTGCTTGCCATGAAAGAAGGAGAAAAGGTAGACAACTTCTTGGGGAGAACCTT GACTGTGGTAAACAAGATGAAATCAAATGGTGAGACAATGGAGCAGAGTACAGTGGTCAGTAAGATACTTAGATCATTGA CTTCCAAGTTTAATTATGTTGTTTGTTCGATAGAGGAATCAAATGATTTAAGTATCTTGAGCATTGATGAATTGCATGGA AGTCTGCTTGTTCATGAACAAAGGATGCAAGGACACCAAGAGGAGGAACATGTCTTGAAAGTGGCTCAAGAAGATAGGTC CAGCAGAGGAAGAGGTCGAGGTGCACCTAGAGGAGGATGTGGCAGAGGTAGAGGGAGACAACTTCTAAATATAGAGGTTA TTTAA
Protein sequence (LotjaGi1g1v0135900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSLVNEGIPVLETRTTPASEEKKKAVEEAKLKDLKVKNYLFQAIGREILETILDKETSKAIWNSMKQKYHGSKKVKRAQ LQALRREFELLAMKEGEKVDNFLGRTLTVVNKMKSNGETMEQSTVVSKILRSLTSKFNYVVCSIEESNDLSILSIDELHG SLLVHEQRMQGHQEEEHVLKVAQEDRSSRGRGRGAPRGGCGRGRGRQLLNIEVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 197 | 180 | 1.2E-73 | – | |
| PANTHER | 18 | 197 | 180 | 1.2E-73 | – | |
| Pfam | 33 | 170 | 138 | 3.1E-23 | – | |
| MobiDBLite | 182 | 204 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0135900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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