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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0137500 |
| Transcript ID | LotjaGi1g1v0137500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit G; TAIR: AT3G11400.1 eukaryotic translation initiation factor 3G1; Swiss-Prot: sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A1J7G0E8|A0A1J7G0E8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0137500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22442807..22445315) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAACATGCTCACTACATCCACAACAAGACCACATAATAGGTTTAGTTTCACCTGTTTGTAACCGATAACGAGGTATC TTTGTTCATCGTTCGTTTCTCACTCTGGTCGCGTTGTGGTAAGAGGAGAAGACACTAGAGACAGTGCTCGATCGATAGCC ATGGCGCACCATCAGGTTCAAGGGAAGATGCGGTGGGGTGAATTGGAGGAAGAAGACGGCGAGGATCTCGATTTCCTCTT GCCGCCGAAGCAGGTGATTGGTCCTGACGAGAACGGCATCAAGAAGGTCATCGAGTACAAGTTCGACGACGATGGCAACA AGGTCAAGATCACCACCACCACTCGCACCCGCAAGCTTGCTAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGCCGCTCC TGGCCCAAATTTGGGGATGCTGTTCATGAAGATGTTGGTGCTCGTCTCACCATGGTGTCCACTGAAGAGATCCTCCTTGA ACGCCCCAAGCCTCTTGGTATTGAAACCCCTTCCCTTCCCCTTTTTTCTCTAATTGGGATTTCTAGGGTTTGTTCTAGAA TTGATTTTTTCAAAACCCTAATTAATTGGGTTTTTTGCTTGTTTGTTTTTGTTCCACGTGTCTGTGAAATTTCAAAAATT GGGTCTTTTTTATTAGGGAATTCTGTTAGTTTTGTTTTCATGTTTTGGGTAGAAGTGATGATGAAGGAAGAAGCTATCAA GTGTGTGTGTTTAGAAGCTAGTAGGATTTCATGTTAGGAAGAGAAGTGCATCTGAAAGAAGCTACTAGCAATGGTTTTTG AGAATGGAGAAGTGATTCTGAAAATTTTCAATCAGAAACCGAACATGTTGTAAATGTGTGTTTGTAAGTGATTCTGTTTC AAAGCTCCCATCAAGCTTCTGGCCTAAGGTGCTTTGAATTGTCTGGCCACTATTGTTCCAAACACGAAATTAGTTTTGTG AGGAGGAAGTGATTTTGAGAGTATTGAAAGTAAATTCAAACATGCTGTTGAGAGGTTTTGAGTGAGCATGAAGGTGAAGG TGTCAAGGTGTCAAACTTGACCTCTGTGTCTGTTGTTTGGGTTATTGTAGGGATTAGTCTATCATGGGTATGTAATGTCA TAACTTTGCTGCAACTGTTAATGAGAAACGGTTGTTAATGTGTTTGGATTTACTTCTTTTAACCCTAGAAGTGATTCAGT TTTAAGGCTTTCCTCGAGCTTCTGGTCTAATGTGGTTTGAATTGTGTGTCCGCTATTGTGCCAAACACCAAAATGGCTTA GGTGAGGAAGAATTTATTTTGAGTGTGTTAAAAGTGGATTCGAACATGCTTTTAAGAGGTTTTGAGTGAGCAATTGAGCA TGAATGTGAAGCTGTTGAACTTGACCTCTGTCTCTGTAGTTTAGGTTATTGTATGGATTAGTCTATCATGGGTGTGCAAT GTAATAACTTTGTTGCAACTGTTAACAGGTGCTAAAACAGAGGAGCCAAAGGCTTCTGGAGATCCATTCCAGAAAGGTGC TGTTCTTATGGTGTGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCCAGGTGTCCCTACAAGGACCTTGCACAGC CCTCTGAGGGATTTGTCGATAAGCCTCCTTCGGCGGGTGATGCTGGAGCTGGTGCTGCCAAGGGACCGGGAGCATCAACT TATGTGCCTCCTGGCATGAGAGCTGGTGCGGAGAGGACGGCTGGATCTGACATGCGGCGTAGGAACGATGAGAACTCTGT CCGGGTCACCAACCTCTCAGAGGACACTAGGGAGCCCGATTTGCTCGAGCTCTTCCGTCCATTTGGTGCTGTAAGCAGGG TCTATGTTGCGATTGATCAGAAAACTGGTGTCAGTCGAGGTTTTGGCTTTGTAAACTTTGTCAGCAGGGAAGATGCACAG AGAGCCATCAACAAACTCAATGGATATGGCTATGACAATCTCATCCTCAGAGTTGAATGGGCCACACCTAGGGCAACCTA AAATACTGTGTGTTGTTTTAGTCCCCCTTTTTTGTTAGAATGCTGTTTACAAAGGTCTATTTATTTTTATAATCGGAGTC CCAGACTATATGTTTCCTTTGAGATATTTAGCATCTGAAAGCAAACGTTCACTCATCTGTTGTTGGTTAATTAATATTAT GAACATTGTTTTTTGTGGTCCACAAAGTGTCATTTTATTTTTACCCATGCTGTTACTCTATAAGAAGTATCATATTGGAA CGGAAAATGATTCTGATGTTTCTTGGTCTAGGGTTTATGATTTATCAATTTTAATCTTCTCTAGCATGATTTCTCTAACT AGGGTAAATGATCACTTTCGTCCCTAAAGTTACCGGCGTCGGGCAAGTTAGTCCCTATTTTATATAAATGTTGTTCGTAG TCCCTGAAGTTGTAAAACACCGATCACGTTAGTCCTTGCCTCTGCTTCCGTTAGTGATCGTTAACGGAGACGATGATTTG GCACGTTAAGTGTCCTAATGGACTTGCCA
CDS sequence (LotjaGi1g1v0137500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCACCATCAGGTTCAAGGGAAGATGCGGTGGGGTGAATTGGAGGAAGAAGACGGCGAGGATCTCGATTTCCTCTT GCCGCCGAAGCAGGTGATTGGTCCTGACGAGAACGGCATCAAGAAGGTCATCGAGTACAAGTTCGACGACGATGGCAACA AGGTCAAGATCACCACCACCACTCGCACCCGCAAGCTTGCTAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGCCGCTCC TGGCCCAAATTTGGGGATGCTGTTCATGAAGATGTTGGTGCTCGTCTCACCATGGTGTCCACTGAAGAGATCCTCCTTGA ACGCCCCAAGCCTCTTGGTGCTAAAACAGAGGAGCCAAAGGCTTCTGGAGATCCATTCCAGAAAGGTGCTGTTCTTATGG TGTGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCCAGGTGTCCCTACAAGGACCTTGCACAGCCCTCTGAGGGA TTTGTCGATAAGCCTCCTTCGGCGGGTGATGCTGGAGCTGGTGCTGCCAAGGGACCGGGAGCATCAACTTATGTGCCTCC TGGCATGAGAGCTGGTGCGGAGAGGACGGCTGGATCTGACATGCGGCGTAGGAACGATGAGAACTCTGTCCGGGTCACCA ACCTCTCAGAGGACACTAGGGAGCCCGATTTGCTCGAGCTCTTCCGTCCATTTGGTGCTGTAAGCAGGGTCTATGTTGCG ATTGATCAGAAAACTGGTGTCAGTCGAGGTTTTGGCTTTGTAAACTTTGTCAGCAGGGAAGATGCACAGAGAGCCATCAA CAAACTCAATGGATATGGCTATGACAATCTCATCCTCAGAGTTGAATGGGCCACACCTAGGGCAACCTAA
Protein sequence (LotjaGi1g1v0137500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHHQVQGKMRWGELEEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRS WPKFGDAVHEDVGARLTMVSTEEILLERPKPLGAKTEEPKASGDPFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEG FVDKPPSAGDAGAGAAKGPGASTYVPPGMRAGAERTAGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVA IDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 289 | 289 | 2.7E-91 | ||
| PANTHER | 6 | 289 | 284 | 8.0E-164 | – | |
| PANTHER | 6 | 289 | 284 | 8.0E-164 | – | |
| Hamap | 9 | 288 | 280 | 28.485 | ||
| Pfam | 31 | 154 | 124 | 3.1E-34 | ||
| CDD | 38 | 153 | 116 | 2.90438E-35 | ||
| SUPERFAMILY | 160 | 284 | 125 | 4.97E-28 | ||
| MobiDBLite | 160 | 207 | 48 | - | – | |
| Gene3D | 181 | 289 | 109 | 1.5E-26 | ||
| ProSiteProfiles | 208 | 286 | 79 | 18.786 | ||
| SMART | 209 | 282 | 74 | 4.8E-24 | ||
| CDD | 209 | 284 | 76 | 1.08539E-45 | ||
| Pfam | 210 | 276 | 67 | 1.3E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi1g1v0137500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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