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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0139600 |
| Transcript ID | LotjaGi1g1v0139600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|Q9SB61|ZHD2_ARATH Zinc-finger homeodomain protein 2; TrEMBL-Plants: tr|G7KBF3|G7KBF3_MEDTR Homeobox domain, ZF-HD class protein; Found in the gene: LotjaGi1g1v0139600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22907687..22909969) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAACAACACAATCTCACTTAGCTTAGTCATTATTAACCTTGTGAAACAAACTCTCTAGTGGTTTTTTCATTCATTC ATTCACTATTCTCACCTCATGAGTCATGTAGATCTTCAATCTCCTCTCATGTCTCAAGCATCTAGCTAGTAAAAATCTAG AGTGTGGAAAAAAATTGGTGAGAAATTTTATTTTATATTTTTGAAAAAAAGAAAAAGTGGAGATTGATATGGAGTTTGAT GAGCAAGAAGAGCAAGATGAAGAAATGGGGATCCCGGAGTCACCGCCGCCGGTGCCGGCGAGTTACGACCCGCTTTTGAA CTCAGCACCGAGATCCAAAATCGCAGAGGTTTCAGCGCCTGTAATCGGGAGGAAAGGCGGCTCGTTTACCCCGCCGGTGG CAGCGGGGGTTGTGAGGTACAGGGAATGCCAGAAGAACCACGCCGTCAGCTTCGGCGGCCACGCCGTCGACGGGTGCTGC GAGTTCATGGCTGCCGGAGATGAAGGCAAGCTGGAGGCTGTGATCTGCGCCGCCTGTAACTGTCACCGGAACTTCCACCG CAAGGAGATCGACGGCGAAACAGTGGCCTCGTGCCAGAGGCAGCAGCCTCCGCCTCCTCCGGTGCACCACCACCAGTACC ACAGCCAATTCTCCCCTTACTACCACCGTGGACCTCAGCACCATGCCGCCTCCGGCGGCTACCTCCACCACCACCTGACA ACATCTCCGACGGCGCCCCACCGGCCGTTAGCACTTCCACCGGCGACTTCAGGAGGTGGATTCAGCAGGGAGGAGGAAGA CATGTCTAACCCTAGCAGCAGTGGTGGAGGCGGCGGTGGCGGCGGAGGTGGAATGAAAAAGAGGTACAGGACCAAGTTCA CGCCGGAGCAGAAGGAGAAGATGCTGGCTTTTGCAGAAGAGCTTGGTTGGAGAATCCAGAAGCATCAAGAAGCTGCTGTT GAACAATTCTGTGCTGAAACTTGTGTGAGGAGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAA GAAACCCTAATTAACTTTTTCCGATCATTCTCTCCGATTCTCTTTCATGGTGGTGAAAGAGAGAAGGAGAGAAAGAGAAA GAGCATTATGTGTGAAAGAAAAAAGAAACTTTGATGTTGATGAAAGTGCAACTTAATGGAGATCGATGTAGTTAGGGTTC TTACTTGTTCTTCATCATCATTTGGTTAATTAAATAATTTAGTTAATTTCAGTTTATAGTGTTATTCTATGATGTTCAGT TTTGATTTGCAACTTGCAACCTTGAGCTAGCAACCAGCATTGTTATTATTACATAATTAAAACAATGATCAGGTTATCAA TTGCGAATCAAATCTCGTTTATTTGTTGACTGTTGTGTGTAAAGGTAGAGACACCAAGTTTTGAAGAAGAAGAAAAAAGC AAACAAACGTTGTTTATGGGAAAATCTTGCTAGTGTATGTGTCTTTCAGACAAGAGAACGTGAATGGCATGCAATAATGG AATTAACTTAGCTTTGTGTGTGTTTTCAATCTTCTCCTACATTTGTTCCTTCACTTCACACATAGCTTTTTGTTTGTTAT TTAATTTAATTTCTCGTTCATTTCCAAGTTTCCAACATCCTTAAAGTCCCCGGTGTTAACCTCGTCCTCCATTGTGATTC AGTGATTTTTTATCTTCTTCTCTTATTCTTCTGTGTTGGGTCGCTGTTGTTGGTTTTAATTATGTGTGTGAGCGTTGGGA AAAGGAAAATGAAAAAGAAATGTATATATAGAATTCAAACTCATGAATAATGTAAAATGTTTTCTTCACAAGGTGAGGTG GAAGGAGGTGGAAGAGGAGAGAGATAGGAAGAAAAGAAAAAGTAAAAGAGAGAAAATATGAGATGTGATAAATGATAAGA GAAGAGAGGTAGAAATAAAAATAGGTGAAAATGAAGTGTTTAAAAGATGAGGTTTGTATATATCATTACTCCATGAATAA TGATTCTTCAGAATGAATGAATGAATTGCCATTGTGGTGAATGTTTGGTCAGTGCGGTGTGAAAAGCGAGAAAGCAATGG ATGGAAGAACTAGGAGTGGGTATTCACGCGGCAAAATCGTACACTGTATGCCTGTCGGGTCACAGATTACAGGCTTGCAC TTCAGAAGAGTTGCAGACTTTATTTTTTTCTGGAGTATGATTAGCAGCGTCCTAAATAATCCTATTTATGTTCTATCTAC TTGTTCTTATCTACTTGTTACTTTAATTTCCTCTTCTTAACTA
CDS sequence (LotjaGi1g1v0139600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTGATGAGCAAGAAGAGCAAGATGAAGAAATGGGGATCCCGGAGTCACCGCCGCCGGTGCCGGCGAGTTACGA CCCGCTTTTGAACTCAGCACCGAGATCCAAAATCGCAGAGGTTTCAGCGCCTGTAATCGGGAGGAAAGGCGGCTCGTTTA CCCCGCCGGTGGCAGCGGGGGTTGTGAGGTACAGGGAATGCCAGAAGAACCACGCCGTCAGCTTCGGCGGCCACGCCGTC GACGGGTGCTGCGAGTTCATGGCTGCCGGAGATGAAGGCAAGCTGGAGGCTGTGATCTGCGCCGCCTGTAACTGTCACCG GAACTTCCACCGCAAGGAGATCGACGGCGAAACAGTGGCCTCGTGCCAGAGGCAGCAGCCTCCGCCTCCTCCGGTGCACC ACCACCAGTACCACAGCCAATTCTCCCCTTACTACCACCGTGGACCTCAGCACCATGCCGCCTCCGGCGGCTACCTCCAC CACCACCTGACAACATCTCCGACGGCGCCCCACCGGCCGTTAGCACTTCCACCGGCGACTTCAGGAGGTGGATTCAGCAG GGAGGAGGAAGACATGTCTAACCCTAGCAGCAGTGGTGGAGGCGGCGGTGGCGGCGGAGGTGGAATGAAAAAGAGGTACA GGACCAAGTTCACGCCGGAGCAGAAGGAGAAGATGCTGGCTTTTGCAGAAGAGCTTGGTTGGAGAATCCAGAAGCATCAA GAAGCTGCTGTTGAACAATTCTGTGCTGAAACTTGTGTGAGGAGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAA CACTCTTGTGCGGTGTGAAAAGCGAGAAAGCAATGGATGGAAGAACTAG
Protein sequence (LotjaGi1g1v0139600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFDEQEEQDEEMGIPESPPPVPASYDPLLNSAPRSKIAEVSAPVIGRKGGSFTPPVAAGVVRYRECQKNHAVSFGGHAV DGCCEFMAAGDEGKLEAVICAACNCHRNFHRKEIDGETVASCQRQQPPPPPVHHHQYHSQFSPYYHRGPQHHAASGGYLH HHLTTSPTAPHRPLALPPATSGGGFSREEEDMSNPSSSGGGGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKHQ EAAVEQFCAETCVRRNVLKVWMHNNKNTLVRCEKRESNGWKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 6 | 269 | 264 | 2.1E-88 | – | |
| PANTHER | 6 | 269 | 264 | 2.1E-88 | – | |
| Pfam | 62 | 114 | 53 | 1.4E-27 | ||
| TIGRFAM | 63 | 114 | 52 | 5.5E-26 | ||
| ProSiteProfiles | 64 | 113 | 50 | 26.628 | ||
| MobiDBLite | 120 | 212 | 93 | - | – | |
| Gene3D | 193 | 271 | 79 | 2.4E-31 | – | |
| SUPERFAMILY | 196 | 269 | 74 | 2.48E-19 | ||
| TIGRFAM | 210 | 267 | 58 | 8.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0139600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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