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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0139900 |
| Transcript ID | LotjaGi1g1v0139900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transport inhibitor response 1-like protein; TAIR: AT5G49980.1 auxin F-box protein 5; Swiss-Prot: sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein; TrEMBL-Plants: tr|G7KBF5|G7KBF5_MEDTR Transport inhibitor response protein, putative; Found in the gene: LotjaGi1g1v0139900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22967923..22972183) extracted from Lotus japonicus Gifu genome v1.2.
GTCAGCAACAGTTTGAAAAAAAAGAAGTAGTGTATGGTAAGATTATTGGCATTAAGGCAATGCATACTACTACTACTACT AGTGTGGTGGACTTAAAAAGAAATGTTCACTCTCTCTCTCTTTCACATACACACACTCTCACTCTCCCCATCTACAATAA TATCATATCATCTTCCCCCCACCCACACAATCTCTCTCTCTCTCTCTACTCAAGCTTTCCATTTCATTTCCATTTCAGTT CTAAATCCTATTCCTTTTCCATCCTCTCTCACTATTCTACTCCCATTTCCCCCACGAATCCAACACCCCCATCAACCACT CAAAGATTCCACTGAATCCAACTCAGATCGGACAAAATGAGAGATAACCACCCTCCGCCGCCCACCTCCGACGACGACCA CCGATCCTCCTCCCTCCCGGATCTTGCCAGAGGCGGCCAAATCACCGACTCATCCTCCTCCAAAACCCGACCCGGACCCG GCTCATCATCATCATCACTCCCTCAACCGGGTTCCGGCTCGGAGCTCCAGGCACAGTTCCCGGACCAGGTCCTCGAGAAC GTCTTGGAAAACGTGCTCCACTTCCTCTCCTCACGCCGCGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTGCCG CGCCGAGGCGCTCACCCGATCCGAGCTTTTCATCGGGAACTGCTACGCGGTGTCGCCTCGCCGCGCCACCGCCAGGTTCA GCCGCGTCCGGTCTGTTACCGTGAAGGGGAAGCCGCGGTTCGCGGATTTCGATCTGATGCCGGACGATTGGGGGGCCCAC TTCGCCCCCTGGGCAACCGCGCTGGCTCAGGCTTATCCATGGCTTGAGAAGATCCACCTCAAGCGCATGTCTGTCACCGA TGAAGATCTCGCCGTCGTTGCCGATTCATTCTCCGGCTTCCGTGAGCTTGTCCTCGTTTGCTGCGAGGGCTTCGGCACTC GCGGACTCGCCGCCGTTACCTCCAAGTGCAGGTAATTGCCGTGGCTAGAGATCACTATAGTAGATTTTCTCTCTAATTTG ATACATTGATAATTCAATTTTTTTGGAGGAAAAAATTAAATTAGTTCAAATTGATTGTCACCCATTTCATCCTAGTTCAA TTGTTAGGCTTTAGAAGCTTCATTTGTTGATTATCAACTCTTGATAGTTCAGAGAACTGAATAAAGGTGTTTATTTTTTG TACTTGAACTTGGTGATGAAGATTGAGCAGTGATTTGGGGTTTTATTTTAGTGATGGATTAACAAGTGTGATTGGGTTAG TTGTGAATTTTGACTTAGCATTGTTGTGTGGGTTGAATTTGTCTTTTTATTTGTGTGTGTATTGTTGTTGGTTCAGGTTG CTGAGGGTGCTTGAAGTGGTGGAATCCTTGGTGGAGCCGGTATCTGAGGACGAGGTGGATTGGGTGTCGTGTTTTCCAGA GACTCAGACTCATTTGGAGTCTCTTGTTTTCGACTGTGTTGAGTACCCGGTGAATTTTGAGGCTTTGGAGGGGCTGGTAG CGAGGTCACCTGGTTTGAAGAAACTTAGATTGAACCGTTTTGTGTCCATGCCTCAGCTGTACCGGTTAATGCTTCGTGCT CCCCAGCTCACGCATCTTGGAACGGGTTCATTCAGTGACAGTGAGGCTTTGGAACAGGAACCTGATTATGCCTCTGCTTT TGCAGCTTGCAGATCATTGGTTTGTTTGTCTGGATTCAGGGAGATTTGGGCTAATTACCTTCCCGCCATTCTTCCAGTTT GTGCAAATCTCACTTCATTGAATTTGAGCTATGCTGATGTTAATGCAGATCAGCTGAGGTCTGTTATATGCCACTGCCGT AAGCTGCAGATATTGTGGGTGTGTGCTGCTGATTTTGTCTTGTGCAATTCTTATTTCATTCTCAAATCAAGTAATAGAGA TATTTGAAGCTTACTATTTTTGCTTTTGTTGTGCAGGCTCTTGATTCGATTGGTGATGAAGGCCTTCAGGCAGTGGCTAC AACTTGCCATGATCTACGCGAGCTTCGAGTTTTCCCTGTGGATGCGCGGGAGGAGTCTGAAGGTCCAGTTTCTGAGGTTG GTTTTGAAGCAATATCAAAGGGTTGTAGGAAATTGGAATCAATTTTGTTTTTCTGCCAGAGGATGACAAATGCAGCTGTG GTAGCTATGTCAAAGAACTGTCCTGATCTTTTGGTGTTTCGTCTATGTATTATTGGGCGATATCGGCCGGATGCTGTGAC TCAAGAACCAATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAGGAAGCTCACTCGACTTGCTGTGTCTGGTTTGC TGACTGATCGGGCTTTTGAGTATATTGGAAGGTATGGGAAATTGGTTAGGACATTGTCAGTTGCCTTTAATGGGGACACT GACCTGGCCCTTAAATATGTGCTAGAAGGGTGCCCTAATATGCAAAAGCTTGAAATCAGGGATTGTCCATTTGGGGATGC AGCTTTGCGATCTGGGTTGCATCATTATTACAACATGAGATTCCTCTGGATGTCGAACTGCAAATTGACGCGCCAAGCTT GCCAAGATGTTGCACGAGCATTGCCCCACCTTGTTGTGGAAGTGATCAACAAGGAAGACGAGGCGGCAGTTGATGATATT GAGTTATTGTACATGTATCGGTCTCTTGATGGGCCGCGGGATGATGCTCCACAAGTTGTTACCATTCTGCATTAGATTTT TCAATTCAAGACGTTTATAGCTTTTTCCTATGGTGGCTATTGAGTGTAATATGGAGCCAGGGGATTTCTACTATCAATGT CAAATGAAGTTCTCCTGTTCTTGGCGTGGGCGGCTGCGGCGGCAGGCCACAAAGATGCTATCGTGAGAGAAACATTTTTT CATTTGCTCTTGTTTATGTCAGAGGACTCAGGTTTGGGAATAGAAAAATAGGGAAGGTTAGGAGGAGAATGGTGCAGAAG ATAAAGTCATACAGGTATTGGACCATTCAATGTTGTTGTATCTTCATAGTTTATGTATTTTTTCCTTCTATTTTCAATTC ATCATATCCGAAAACTGCCAAAGGGTGAAGTAGAGATTGTTGAAGCTGCTCTGAGGATTGGTTCATTGGTGAAATAGTGG TAAATTGAGACAAGTTTCAGAAGTATGAAAACAGAGGGTTTAGAGAGGTGAGGTTCTCTAACTCTTCCACCATATCATAC CAGTAGAGAAGCAAAAACTCTTCCCTTTGTAAGGAACTTAGTCTGTTTATTTGGATTCAAATCATAGTTAGTTCAAACTG TAGGTGGGAAGAATCCAATCCCTGGGCTCATATAAACTTATCCATCTCTTTAATCTCAATGCTTGTTTCTTATTATTATT TTTCCCAGATGTATTGATGTACCATCTGACTGTAGAATTTATTGATATTGCTAGCAATTGTCAGATGTTTAATAAATGCC AGAATTTGCATGGACCATTTTGTGTCTATATCATTTGTTTTCTGAATGTGGAATAATAGCCAGATAGACCTATTAATTAT GTATGGAAAGTGTAACTCAAGTACACGTTCGAGGACCCCTACCACTAGGGGTCCATTTTACATGCCATGAGAATCTCTTT CAAGAGAAAAAGAGGGGGATGGAGAATTTGATGGCCCTCATACACCAAACCTTCTCAATTAGCATGCGTATTTCTGTATA AACATGCTTAATTCGCATGTTTTGGATTGCTTATCTTTTTGTGCATGTTTAGAAACCCTTCTGCAACCGATTCTGAAGCT AAAATCAATTTTGGTGAAAAACTTCTTTCAGTAGTTTCTGGGTTTAAGAATTGATCTTGATGAAATAGAAGCTGATCTTT CTGTGAGAAGCTTGAGTTTAAGAATTGATTATGATATAGAAACCGGTCCAAACCTGCCATTTTATTTTGGACATATGTAA TATTAAGCTGATGTATATTACATGTATAAAATATTTAGCTTGCATAGGGAGTGAGGGGGACCAATAATTTGATGACTGGT CTACCCTTATGCGCTTGCGTTATAAACTATAAAGGGGCCTAGTCCACTAACAGACTATGTCTTTCTCTCTCTCTCATAAT TAGGAAAGAAATCTATCTCACTCTCTTGTTGGTATTCAATCTAGCAAGAGGCAAATTGGTAAAAGCAAACTTAACATCCA AAGTGGGATCTGACTGTGCAAACAAGTGATGGGAACCAAAGCTTTGGCTTCCTTTTTTTCCCCATTTTTCTTCTTCTATC CTTTTGCTGCTACATCAAGTG
CDS sequence (LotjaGi1g1v0139900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGATAACCACCCTCCGCCGCCCACCTCCGACGACGACCACCGATCCTCCTCCCTCCCGGATCTTGCCAGAGGCGG CCAAATCACCGACTCATCCTCCTCCAAAACCCGACCCGGACCCGGCTCATCATCATCATCACTCCCTCAACCGGGTTCCG GCTCGGAGCTCCAGGCACAGTTCCCGGACCAGGTCCTCGAGAACGTCTTGGAAAACGTGCTCCACTTCCTCTCCTCACGC CGCGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTGCCGCGCCGAGGCGCTCACCCGATCCGAGCTTTTCATCGG GAACTGCTACGCGGTGTCGCCTCGCCGCGCCACCGCCAGGTTCAGCCGCGTCCGGTCTGTTACCGTGAAGGGGAAGCCGC GGTTCGCGGATTTCGATCTGATGCCGGACGATTGGGGGGCCCACTTCGCCCCCTGGGCAACCGCGCTGGCTCAGGCTTAT CCATGGCTTGAGAAGATCCACCTCAAGCGCATGTCTGTCACCGATGAAGATCTCGCCGTCGTTGCCGATTCATTCTCCGG CTTCCGTGAGCTTGTCCTCGTTTGCTGCGAGGGCTTCGGCACTCGCGGACTCGCCGCCGTTACCTCCAAGTGCAGGTTGC TGAGGGTGCTTGAAGTGGTGGAATCCTTGGTGGAGCCGGTATCTGAGGACGAGGTGGATTGGGTGTCGTGTTTTCCAGAG ACTCAGACTCATTTGGAGTCTCTTGTTTTCGACTGTGTTGAGTACCCGGTGAATTTTGAGGCTTTGGAGGGGCTGGTAGC GAGGTCACCTGGTTTGAAGAAACTTAGATTGAACCGTTTTGTGTCCATGCCTCAGCTGTACCGGTTAATGCTTCGTGCTC CCCAGCTCACGCATCTTGGAACGGGTTCATTCAGTGACAGTGAGGCTTTGGAACAGGAACCTGATTATGCCTCTGCTTTT GCAGCTTGCAGATCATTGGTTTGTTTGTCTGGATTCAGGGAGATTTGGGCTAATTACCTTCCCGCCATTCTTCCAGTTTG TGCAAATCTCACTTCATTGAATTTGAGCTATGCTGATGTTAATGCAGATCAGCTGAGGTCTGTTATATGCCACTGCCGTA AGCTGCAGATATTGTGGGCTCTTGATTCGATTGGTGATGAAGGCCTTCAGGCAGTGGCTACAACTTGCCATGATCTACGC GAGCTTCGAGTTTTCCCTGTGGATGCGCGGGAGGAGTCTGAAGGTCCAGTTTCTGAGGTTGGTTTTGAAGCAATATCAAA GGGTTGTAGGAAATTGGAATCAATTTTGTTTTTCTGCCAGAGGATGACAAATGCAGCTGTGGTAGCTATGTCAAAGAACT GTCCTGATCTTTTGGTGTTTCGTCTATGTATTATTGGGCGATATCGGCCGGATGCTGTGACTCAAGAACCAATGGATGAG GGTTTTGGTGCTATTGTTATGAATTGCAGGAAGCTCACTCGACTTGCTGTGTCTGGTTTGCTGACTGATCGGGCTTTTGA GTATATTGGAAGGTATGGGAAATTGGTTAGGACATTGTCAGTTGCCTTTAATGGGGACACTGACCTGGCCCTTAAATATG TGCTAGAAGGGTGCCCTAATATGCAAAAGCTTGAAATCAGGGATTGTCCATTTGGGGATGCAGCTTTGCGATCTGGGTTG CATCATTATTACAACATGAGATTCCTCTGGATGTCGAACTGCAAATTGACGCGCCAAGCTTGCCAAGATGTTGCACGAGC ATTGCCCCACCTTGTTGTGGAAGTGATCAACAAGGAAGACGAGGCGGCAGTTGATGATATTGAGTTATTGTACATGTATC GGTCTCTTGATGGGCCGCGGGATGATGCTCCACAAGTTGTTACCATTCTGCATTAG
Protein sequence (LotjaGi1g1v0139900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDNHPPPPTSDDDHRSSSLPDLARGGQITDSSSSKTRPGPGSSSSSLPQPGSGSELQAQFPDQVLENVLENVLHFLSSR RDRNAASLVCRSWCRAEALTRSELFIGNCYAVSPRRATARFSRVRSVTVKGKPRFADFDLMPDDWGAHFAPWATALAQAY PWLEKIHLKRMSVTDEDLAVVADSFSGFRELVLVCCEGFGTRGLAAVTSKCRLLRVLEVVESLVEPVSEDEVDWVSCFPE TQTHLESLVFDCVEYPVNFEALEGLVARSPGLKKLRLNRFVSMPQLYRLMLRAPQLTHLGTGSFSDSEALEQEPDYASAF AACRSLVCLSGFREIWANYLPAILPVCANLTSLNLSYADVNADQLRSVICHCRKLQILWALDSIGDEGLQAVATTCHDLR ELRVFPVDAREESEGPVSEVGFEAISKGCRKLESILFFCQRMTNAAVVAMSKNCPDLLVFRLCIIGRYRPDAVTQEPMDE GFGAIVMNCRKLTRLAVSGLLTDRAFEYIGRYGKLVRTLSVAFNGDTDLALKYVLEGCPNMQKLEIRDCPFGDAALRSGL HHYYNMRFLWMSNCKLTRQACQDVARALPHLVVEVINKEDEAAVDDIELLYMYRSLDGPRDDAPQVVTILH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 23 | 57 | 35 | - | – | |
| Gene3D | 55 | 101 | 47 | 1.3E-11 | – | |
| PANTHER | 56 | 627 | 572 | 0.0 | – | |
| PANTHER | 56 | 627 | 572 | 0.0 | – | |
| SUPERFAMILY | 57 | 96 | 40 | 1.96E-5 | ||
| Pfam | 63 | 102 | 40 | 2.8E-18 | ||
| Gene3D | 102 | 630 | 529 | 2.0E-149 | ||
| Pfam | 123 | 168 | 46 | 1.6E-24 | ||
| SUPERFAMILY | 141 | 579 | 439 | 2.35E-26 | – | |
| SMART | 185 | 210 | 26 | 120.0 | ||
| SMART | 372 | 395 | 24 | 430.0 | ||
| SMART | 429 | 453 | 25 | 49.0 | ||
| SMART | 489 | 512 | 24 | 30.0 | ||
| SMART | 538 | 562 | 25 | 90.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0139900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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