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IPR041567 is a COI1, F-box.
<p>Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. The role of COI1-mediated JAZ degradation in jasmonate (JA) signaling is analogous to auxin signaling through the receptor F-box protein transport inhibitor response 1 (TIR1) , which promotes hormone-dependent turnover of the AUX/IAA transcriptional repressors. The crystal structure of COI1 reveals a TIR1-like overall architecture, with an N-terminal tri-helical F-box motif bound to ASK1 and a C-terminal horseshoe-shaped solenoid domain formed by 18 tandem leucine-rich repeats. This entry represents the N-terminal F-box domain which is also found in other auxin signaling f-box proteins such as AFB1, AFB2 and AFB3 [[cite:PUB00091441]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Coronatine-insensitive protein 1; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|A0A0L9UW22|A0A0L9UW22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0081000 | 12 | ||
| – | Coronatine-insensitive 1-like protein; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|A0A1J7GQB4|A0A1J7GQB4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0081000 | 12 | ||
| – | Transport inhibitor response 1-like protein; TAIR: AT5G49980.1 auxin F-box protein 5; Swiss-Prot: sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein; TrEMBL-Plants: tr|G7KBF5|G7KBF5_MEDTR Transport inhibitor response protein, putative; Found in the gene: LotjaGi1g1v0139900 | 15 | ||
| – | Transport inhibitor response 1 protein; TAIR: AT1G12820.1 auxin signaling F-box 3; Swiss-Prot: sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3; TrEMBL-Plants: tr|A0A151SK39|A0A151SK39_CAJCA Protein AUXIN SIGNALING F-BOX 3; Found in the gene: LotjaGi1g1v0631200 | 16 | ||
| – | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|I1NB13|I1NB13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745500_LC | 14 | ||
| – | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|I1NB13|I1NB13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745700 | 16 | ||
| – | F-box/LRR protein; TAIR: AT1G80570.2 RNI-like superfamily protein; Swiss-Prot: sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A1J7HBP2|A0A1J7HBP2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005600 | 14 | ||
| – | F-box/LRR protein; TAIR: AT1G80570.2 RNI-like superfamily protein; Swiss-Prot: sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A1J7HBP2|A0A1J7HBP2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005600 | 14 | ||
| – | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600; TrEMBL-Plants: tr|I1KQQ6|I1KQQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0048600 | 14 | ||
| – | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|A0A072VML5|A0A072VML5_MEDTR Transport inhibitor response-like protein; Found in the gene: LotjaGi5g1v0262400 | 16 | ||
| – | Coronatine-insensitive 1; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|Q45FY8|Q45FY8_SOYBN Coronatine-insensitive 1; Found in the gene: LotjaGi6g1v0070300 | 12 | ||
| – | F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A0S3S3G5|A0A0S3S3G5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302100 | 17 | ||
| – | F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A0S3S3G5|A0A0S3S3G5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302100 | 18 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF81383 | SUPERFAMILY | 1 | 7.69 |