Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0140300 |
| Transcript ID | LotjaGi1g1v0140300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bet1-like protein family; TAIR: AT4G14600.1 Target SNARE coiled-coil domain protein; Swiss-Prot: sp|Q8VXX9|BETL1_ARATH Bet1-like protein At4g14600; TrEMBL-Plants: tr|I3SAI6|I3SAI6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0140300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23018256..23022755) extracted from Lotus japonicus Gifu genome v1.2.
CATAAATTTAATAAGTGATGAATGTTCTTCGACAGGTCGCGATGGATGTTGTTTACGAGAAGAAGGGGTCGGAATTGCAC AGCCCCGCAACGCATCGATGCAGGCCGTTGAACCTTGCCGCACGTCACAGGCGCATGTAGCAATGGATGGAAGCTGGAAT GCGGAGGATTACCGAATGGGATGCAAAGCTGTTATCCGAGATAACCACATGGAGTCTGGGTAGTCGGTGTGCCTCTCAGT CAGGCATGGAATGCATATCTTGTTGAGGTTATGGGCATGGAACTTGAACTGCAACATGCACGAGCAATTTGGCTATCGTG ATGTTTCATGTGTCTTCGATTGTGCCAATTTGGTTGAAGTGATGCAAAGCACCATAGATACATCAACTTATTGGGCAAGG GATGTCATCGATCGAGTTACAATCATGCTCTCTTGGGGTTGGAATGTTACTATTGATTACGTGCCCATGAAAGAAAATAG CAGCGTGGATTGTTTGGCCCGACAAGCATCTAGGGAGGGTACTCCACGCAACGTTTGGAGACTCCCGCCGTCATTTGTTA TCTAGTCCGTCTATTTAGATGCTCTAGTGTAGTTTTTCGGTGGCTGTTAGGGTGGAAGTGCACTCTAGGTCTTGCACCAT GCAAGAGGGTAAATCACCTACTATAACAGGTTTTGTTACCTGCTGTAAGAAAATTCAAAATAAAAAATAAAAAGGGAGGT TACAAAAATACCCTGCACTATTCTTCTCCCTGCTCTCTACCTCTCTTCCCCACCGATGACATTTGTACCCACTTGACCAC CATGGCTCTGGAGCCCAGGTCCAGCCTCCTCCTTACCAGAGCCCTTCTGCCGTCACACTCCAACCCTTCCCTTCCCCCTT CGTTCAGTAGAGGAACTCTTCCATGGTGGGAAGATTAAGCCTTTGGTGAAATATGTTAAAACCTAGATTTCCTTCATTCA GATCTGAGATCGACACTCAACGCCACCATCGGAGCCACCGAGATGCCGATCACCACCACCACCATCATCGATCTGATATA TCCTGTATTTTTTGGTCATGCATGGTGCCAGCCACCGTGAACAGATCTACCCTCCATTTATCTCGCCGGAGCAGCCATCA ACCGAGCTCTGTCGATGGCGCCCGTAACCACCACGCGACGCCGTTATTTCCTCTTCCTCGCCGCCCAGGTCCAACCCCAT TGTCCAAACCACCAACGACGGTGGCGGACCTCTGGTGTGGGTTAAATGGTGGTTTGGAATCTGTGTTCGGGTCTTGTTTT ATTTGATCTGATTTTTTTATTTTGATGATGAATGATATTGAAATCAAGATGTTGTTGGGTTGCTTGTTGTTGTTGCTATT GATTTGAAGGTGTGGGCTTAAGTTTAAATGAACATAATCTGGTAGCCGGAGGCGGTGGTGGTCGGAGGCGAAGGTGGTGG TTAGAGGTGGTGGTTAAAGGTGGTGGCCGTGTGAGGTCTTGGCCGGAGGCTGGAGATTGCTGATGAAGATGGTTGAGAGA GAAAGACAATAATGAGCTTTATTGTAAAAGACAAATTAAAATTATAATAAATTTTGAATATAAAATTACAGGTATAACAT GTTATAGATACAGTATCAAAATGGAATATTCCATTTTTATGGCTCTAAATGTGTCTTGCACCGGTGCAAGACCCACAACC TATTGCACCTTAGACAACACCTAGTTTTTCATGCTTGTTAGTTTTTCTCTTTGTAGTAAAAAATAAGTTAAAGAAATATA TTAAATATATATGACATGTTTGCAATCACGAGTGAGTCACATTCCAGTATTCCCCCAATTTCCCATCTTCCCCTTTGTTT CCTACTTCCTTCAATTTTCTTGGTGAGTAAGATTTCCTCTCTCATTGATTATCATCCCACGACAATTAAACGCTGTCAGA CACACCGCGTTTATTACGTAGTATTCAATTCTTCTACAAAATCAAAAACCAGATCACCTGTGACGGACAATCCAACTTGA TTCGAGAGGATTAGGTTTCTCCCGATTTCCCTTCTTCCTCAATGGCCGCCAATTCCCAAAGACCGGGATCTTTCTACGGC GGCGCCGCCCCTTACCGATCAAGGTAACCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTCTTCATACCTT TGAATTCATTGTGCTTATATGCAATTGCTGCATGTGTTGAATTGCAGCGATGGGCTTAGTACCCGACCCGGTGCTGCCTC CGAGGAGATCCAATTGCGTATTGATCCCATGGACTTGGACGATGAGCTCACCGGTCTTCATAGTCAAGTTAGAAGGCTCA AAAATGTATGTTTCGCCATTTTTCAAGGGTTTTTCTTCCCTCTTTATTTTTCATTCACTTTTGTAATTGTTACTTCATTT GTTTCTGTGTGGTATATTTATTCAATTTAGAAGATGTTGTTATATTTTATTGTGTGAAATTTGACTTGAACTTGGACTGA ATCATGTTTGTGAGTTCTATTCACAAAGGTGAACAAGATTCAAGGTTTCTGCAGGACACTTGGATGAACATGTACATAGA TTTAATCAAACTATGTGTTACAGCTAGTAGTTTTGACTCTTGTTTTAGGATTCTTTATTTTCTATGAGCTTCTAGGCAAT ACCCATTTTTCAAATTTTATGGTTGTTCTTCTGAGGGATTACTATCATTTGATTGCCTTTGATGATGCATGATACACCTG ATTCATGCCTTGTTCTTCTCTAAAGAATGGGAATTTAACATTTTGAAGTTGTTCTCTTTCTTCTGAATTTGATGATAATA GTTAAGGTTTGCGCAAACAACAGGTGGGTAGAGATTACACTTTAAAAATGAGAACTCTGGAAGCTCAGATGGAGGAATAA CTACATTTTGTAGGCTTACTCTTGGAGAAAAATTATGTGCATGTTTTTGGCCCTGAAAATAATTGTCAATCAAGGGGACT ATATGCTTGTTGTGTGTATGCTTCCTTGCATTTTTGTATGTATAACTCAGAAAGCCTTTGTATAAAATTAAGTTCTATTT CCAACAATTTATAACCATTAGTTAGAAATAGATGGAAACGAAGAAAAACTATAGACTAAACCTTTGAGAGGTTTAGAGAT GAATGATTTATATTTGAGTTTTCATAACATGAAACTAAGGCATCCATGTAGGCTATGCTATCTAGTGGGAAAAGATTTGA TTGTTGTTGTTGTTTCAAGTTCCAACTACATGTTATAGAGTCTTTACTCTTCAGCCTTAGCTTGACTTGTTGAATTGTAT GGTGCGAAATCTTTTGATTGTGTTTCAAAACTTATCTTACTCTCCCTTTTCTCTTTTATGCTTTTATACCACTTCTGAAT CTGATATTTGTGGCGCAGGTTGCTCAAGAGATAGGTACTGAAGTGAAGTATCAGAAAGATTTTCTGGAACAGCTGGTATG TAACTTCTTGGTTAATCTCTCTTTCACTTTGTTTTTCTTTTCCAACTGTTTATCAAACAAGTTTTCTGCGCATTAAGAAA TAACTCCACTCTTCTTAGTGTTACCAGTATGATCAATGATTTACTCCTTAAATTTTGATTCTTAAGATTTTGAAAGCTGA ATGCTAACTGTGGCAGGAAACATTTATGAAGGAGCAAAATAGGGTCAACTTGTTATTTTTCTTTTTGATTTAAAAGAAAA ATAGAGGAAAATCTTTCAGCTGGTTTTTGTTGCATGTTGATTCCTAGTAATTAGTCAGATTAGCTCTTTAGCTGAAATCT ACGTGCTGTCATGTTAACACTTGTTTTATCTATTTCAATACAGCAAATGACAATGATAAAAGCTCAAGCTGGAGTGAAGA ATAATTTAAGAAGATTGAACAAGAGCATCATCCAAAGTGGTTCAAACCATATTGTTCATGTCATTCTTTTTGCGTTAGTT TGTTTCTTCATAGTGTACCTTTGGTCAAAGATGTCCAGAAAATGAGGCCTTGCGAGTTTACTACCCAACTTCTTGGTTGA AAGTCTTATGGGCTCTTCGATGACTCATGTAATATGATAGCAAACTTTTGTAAAGAGAAAGCTCTAAATTCCTTTGGAGC TCATTATAAAAAATCTATGACTTTTCAGTTATGTTCACTGGATTGGATGTATGGCATAGTTAAGAATGCATAATTTGCTA GCTTAATGGTTTGACAGGGTTCTTTTTGTCTAAATTTCACGTTTATAAATGAAGTATGCACTTTGGATACAACGGGTTGA AAGTTTAGTTCTTCATTGTGTCATGAATAAAATTGTGTCATTGTGTCATGTCATTTAAAAACCACCTTGTAAGGTTATAA CTCATAACTTTTATGTTCATATCTATTTTTAATTGATATGCCATAGTTATATAGGTGAGACAGGGAAATAGATATCAAAC GGGACAAAAGATTTTAATCTGCATGCAACAACCAAAACCAAGAACTACCCTCAATTCATGAGGTGGCCCTATATCAGGAC CAATAGATTTTCTCTTTTAC
CDS sequence (LotjaGi1g1v0140300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCAATTCCCAAAGACCGGGATCTTTCTACGGCGGCGCCGCCCCTTACCGATCAAGCGATGGGCTTAGTACCCG ACCCGGTGCTGCCTCCGAGGAGATCCAATTGCGTATTGATCCCATGGACTTGGACGATGAGCTCACCGGTCTTCATAGTC AAGTTAGAAGGCTCAAAAATGTTGCTCAAGAGATAGGTACTGAAGTGAAGTATCAGAAAGATTTTCTGGAACAGCTGCAA ATGACAATGATAAAAGCTCAAGCTGGAGTGAAGAATAATTTAAGAAGATTGAACAAGAGCATCATCCAAAGTGGTTCAAA CCATATTGTTCATGTCATTCTTTTTGCGTTAGTTTGTTTCTTCATAGTGTACCTTTGGTCAAAGATGTCCAGAAAATGA
Protein sequence (LotjaGi1g1v0140300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANSQRPGSFYGGAAPYRSSDGLSTRPGAASEEIQLRIDPMDLDDELTGLHSQVRRLKNVAQEIGTEVKYQKDFLEQLQ MTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILFALVCFFIVYLWSKMSRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 107 | 107 | - | – | |
| PANTHER | 5 | 130 | 126 | 6.7E-64 | ||
| PANTHER | 5 | 130 | 126 | 6.7E-64 | – | |
| SUPERFAMILY | 42 | 99 | 58 | 8.22E-11 | – | |
| CDD | 43 | 99 | 57 | 3.85473E-14 | – | |
| Gene3D | 45 | 107 | 63 | 9.6E-11 | – | |
| ProSiteProfiles | 45 | 100 | 56 | 10.17 | ||
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 108 | 126 | 19 | - | – | |
| Phobius | 127 | 132 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of Golgi membrane | The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0140300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…