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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0142400 |
| Transcript ID | LotjaGi1g1v0142400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 protein; TAIR: AT1G78300.1 general regulatory factor 2; Swiss-Prot: sp|P46266|1433_PEA 14-3-3-like protein; TrEMBL-Plants: tr|I3S5Q3|I3S5Q3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0142400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23618478..23621313) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGTATACAAAAATAGAAAATACAGTAGAAAAAGAAAAGGAATTGGTTATTTTTGTCCCCAGGAATGGGATCCAAAGG TCCACATTGTGCGTGGGTGTCACAAACACAAGAATCACACCACACCACCATCCAATCCCACCCTTTCGGTTTCCCCACAA ACAAAATTAGCACTACTACTTTAAGTTAACCCAAAACCGCTCTCTCATTATTTCCATTCTCATTCTCTCTCTAAACTCCC ACCCTCTCTCTCTCCGATCCATTCCGTTAGATCTCGCAATGGCGGCCGCTCCCTCCCCTCGCGAAGAGTTCGTCTACCTC GCCAAACTCGCCGAACAAGCCGAGCGCTACGAGGAGATGGTTGAGTTCATGGAGAAGCTCTCCGCCGCCGTCGACGGCGA GGAACTCACCGTCGAGGAGCGTAACCTCCTCTCTGTTGCCTACAAAAACGTCATCGGCGCTCGCCGTGCTTCCTGGCGTA TCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGTAACGAGGATCACGTCTCCATCATCCGTGACTACCGATCCAAG ATCGAGTCTGAGCTTTCCAACATCTGCGACGGGATCCTCAAGCTTCTTGACTCCCGTCTCATCCCTGCTGCTGCTTCCGG TGACTCTAAGGTGTTTTACCTCAAGATGAAGGGCGATTACCATAGGTATCTGGCTGAGTTCAAGACCGGTACTGAGAGGA AAGACGCTGCTGAGAGCACTCTTGCTGCTTACAAATCTGCTCAGGTTTGTAGATCTGTTCATTTTGCTTGTTAGATTCGC GATTTTCACATGTTTCGATCTATATTTGTGTTTGTGTGTACATGCACTCTTGATGGAAGCTATAGGATAACTGCGTTTTT TTGATTGATTGAATTTGATACTGGTTTGAAATTGACGAAAACGTCAGGTTTGCGATTATATGTTAGATTAGATTGGAATA ATCGAATCTTATAAGGTAATAGTGATTTTTGAATTGAAGAAACTTGAAAATTGCGGATTGCTGGCTTGGAATTGAATGAA TTGCTAGGTTTAGGTTAGATTATTTTCTGAATTAGATTCAAATGAATGAATCTTTACAGTAACAGTGAGTTTTTGTATTC AAGGAGCTTGAAAATCTTGGATTACTGGTTTAATATTGAATGAATTAGATTGGAATGATAGAATTTGGAATATATAAGCG ATTTTGGAATTGAAGGAAGTTGGAAATTGCAGATTACTGGTTCAAAAATTGAAAAACTCAAGTAAGGGGATCCCTGTATG GGTGTGCATGTTTCGCTTACTTAAGTGTTTGGTGTTTGTGGTTCTGCTATGATGATTTTTCGTGTTTCTGTTTTTGTGCT GAGGGATTGATCTGTGGCTATGTGGAATTGAAAATTTTCTTGTTTCTGTTTGCGGTGGGCTGATTTTCTGATGCTTTGGT TTGATTCTTGCTGCAGGATATTGCAAACTCTGAGCTGCCTCCTACTCACCCGATCAGGCTGGGCCTTGCTCTGAACTTCT CTGTGTTTTACTATGAGATTCTGAACTCTCCTGACCGAGCTTGCAGCCTTGCAAAACAGGTTAGTGTTAAAGAAACTGAA ACAGTTAATTGATGTGTTATTTCTTTCAATAATTTACCTTTTTGATTAAATTGATTGGTGGTTGCTGTGAGAAACACATG ATTATGGCTGAATGCAGTGAAATATTCCAATTTTGCTGTCTGTGAATTGGAGTAAGGTTCATTTCATTGCAAAAACTCCA TACTGTAATTTCATTAATGCTGAAATAACCTTGTTAGGTTCTGAATTCTGATAATGAGGAGTATTACGTTTGTTCCTTGA TGACTTCGGTTTGGGTCCCTTCTGTTCTATAATGGTTTGTACTCATGAACACTTTGGTTCCTTTCAATATTCACTAGGCT TTTGATGAGGCCATTGCTGAATTGGATACATTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTCCG TGATAACCTCACCCTTTGGACCTCTGACATGCAGGTATGGATTTTGTGTTAGTACACCATTACTTCTGTATCTTGTCTTG TTTTCTCATCATTATCTTTATTTATTGATTTCATTTTTTTTTTGGGTTTCAGGATGAAGGTGCAGATGAAATTAAAGAAG CCGCACCTAAACCTGATGAACAGTAGCAGCAGTAAACCTATTATTCTGCAAAATTAATTATGGAACTTCTCTTTTATGAT GTATTTAAAGGGAGAAGGTGCTGATTGCTAATCTCAATGCTACTGAGATTTTAGGCATTCGTGGTCTTTGTGATGAATTA TGGATTATGGATGCATTGGGCTGTTTTAGTTTGTCCTTCCATTTGTACTTGTTTTTGAATTGCCTATTTTCTTAACGACA CTGAAATTTCTGTCATGCAATTGGAATATCCAGATTCCATTCTATTTAGCAAACTTCATTTCGCTCAATTTCTTAAATGA TGTGAAGGGGTGGACTTGTATTCATTCTGAAGAAGCCTCCAAACCTGAATTCAGCCCGATTTTCATGCTGAATTCAGCCC CTTCAGTCTGTTTAGAAGGTCTGCTCTGTTGATGATCGGTGCTATTTGTGTGCAATGCTGATGCACATGAATTATATTTT ATCTTGAAAGTCTGATTTCTTTCAAATTCCTAATTCTAACCCATTTGTTTACCCAAGTATTCCTCATATGAAAGAGGAAA GTCGGAAGCTTTCAGTTAGAGGGGGAAGAAATCATTGTAAGGCTGATTTTGAAAAAAATGTTTAAAATGTGCAAACACTA AACAGCGATAAGAAGTAATCCCCTTTAATATTAAAC
CDS sequence (LotjaGi1g1v0142400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCGCTCCCTCCCCTCGCGAAGAGTTCGTCTACCTCGCCAAACTCGCCGAACAAGCCGAGCGCTACGAGGAGAT GGTTGAGTTCATGGAGAAGCTCTCCGCCGCCGTCGACGGCGAGGAACTCACCGTCGAGGAGCGTAACCTCCTCTCTGTTG CCTACAAAAACGTCATCGGCGCTCGCCGTGCTTCCTGGCGTATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGT AACGAGGATCACGTCTCCATCATCCGTGACTACCGATCCAAGATCGAGTCTGAGCTTTCCAACATCTGCGACGGGATCCT CAAGCTTCTTGACTCCCGTCTCATCCCTGCTGCTGCTTCCGGTGACTCTAAGGTGTTTTACCTCAAGATGAAGGGCGATT ACCATAGGTATCTGGCTGAGTTCAAGACCGGTACTGAGAGGAAAGACGCTGCTGAGAGCACTCTTGCTGCTTACAAATCT GCTCAGGATATTGCAAACTCTGAGCTGCCTCCTACTCACCCGATCAGGCTGGGCCTTGCTCTGAACTTCTCTGTGTTTTA CTATGAGATTCTGAACTCTCCTGACCGAGCTTGCAGCCTTGCAAAACAGGCTTTTGATGAGGCCATTGCTGAATTGGATA CATTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTCCGTGATAACCTCACCCTTTGGACCTCTGAC ATGCAGGATGAAGGTGCAGATGAAATTAAAGAAGCCGCACCTAAACCTGATGAACAGTAG
Protein sequence (LotjaGi1g1v0142400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAPSPREEFVYLAKLAEQAERYEEMVEFMEKLSAAVDGEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG NEDHVSIIRDYRSKIESELSNICDGILKLLDSRLIPAAASGDSKVFYLKMKGDYHRYLAEFKTGTERKDAAESTLAAYKS AQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD MQDEGADEIKEAAPKPDEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 250 | 249 | 7.7E-119 | ||
| Gene3D | 2 | 240 | 239 | 2.0E-130 | ||
| PANTHER | 5 | 258 | 254 | 9.2E-163 | – | |
| PANTHER | 5 | 258 | 254 | 9.2E-163 | ||
| SUPERFAMILY | 7 | 240 | 234 | 2.75E-107 | ||
| SMART | 8 | 251 | 244 | 7.2E-204 | ||
| Pfam | 14 | 238 | 225 | 3.0E-104 | ||
| Coils | 14 | 34 | 21 | - | – | |
| PRINTS | 42 | 71 | 30 | 1.2E-88 | ||
| ProSitePatterns | 48 | 58 | 11 | - | ||
| PRINTS | 91 | 115 | 25 | 1.2E-88 | ||
| PRINTS | 122 | 144 | 23 | 1.2E-88 | ||
| PRINTS | 157 | 183 | 27 | 1.2E-88 | ||
| PRINTS | 184 | 210 | 27 | 1.2E-88 | ||
| PRINTS | 211 | 240 | 30 | 1.2E-88 | ||
| ProSitePatterns | 220 | 239 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0142400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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