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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0150600 |
| Transcript ID | LotjaGi1g1v0150600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT5G65210.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|I3T7J6|I3T7J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:25851802..25856492) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGTAATAGTATTAAGTAGTTACTAAATTTTTGTCTCTGTATCTGTCTCTCTTTCTCTATCTGTCAATCTATACTATT TATTTATCTATCTATCTATCTGTTTATATATATAGTTCTCAGATTTATTTTTGGGGTCAGTCCTGAACTAATATTAATAT TGGCGGTTACTGATTCTGTCAAGGTAACTAGCTACAGGTTGGTGTTCTTTTGCTAGCTGTGTTTTTGTTCTTGGTTCAGT TCCAGTTTCTTCTTATCCAACTTGAAAAGTTTTTGTTTTTAGCAAAAGATATTAACTGAGTTTTAGAGACAAATCATACT AAATCAGGATTGGGAGACTGCTACTGATCAAGTTTTGCTAATCAGTGGCATCAAATATATGTCTATTCCATTATATTCCA TTACTCTTAGTATCTAGAAAATTCTCATGTTGTTTGAATGATTCTGGGGACAAACAGAACATTAATCATGTGCAAGCTTT TCTCAATAGTTTTTGATGTTGAGGTTTTATTCAATTTCCAACAGTAAACCCAGCTTCCAGTTTTTCAATGAATTGTCTGT CATACAAAGTGCTAAGTGCAACTAGTTTTGATACACAATAGAAAAGCATGGTGAAACAAAAATCATGGTGAGTAGAAGCA AAAGTTAAGGGAAGTCGTTTCTGTCAACCATGATTTTGGCTCTCCGTGGTTTTCTACTGTGTACCCGAACATGTGTACTA AGTCTTATTTTCCCCCTAATATCTTGTCTACATTTCTCTAACTTGAGAAATGATTTTGCTCTCTGCATGATTTCTAGTAT ATGAGCTCGTCATCAGCTCAACTTGTCATCGCAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGACCATGTGGGG GGACAGCTTTAAAATTGATGGTAGCCTGAATTCAATTGCTTCCCCAATGTTTATGATGAACACTAGCATGGAGAACAAGG TCAGAACACATGAATTTCTCTTTTGTTTGGAGGTTAGCTTCATTTTTTTTGGAAAACTAGTTTACAACTCAGTCTTTTGA ATTGATTTAATTTGTTCAGTCTGTATGTACACCTCATGAATCAAGTTCAAGGGAACCTTCTGGAGATGATCAAGAGACAA CTAACAAAGCTGTTACTAAGGTGATGAAATTTAGTCAGCAAGTTTATCTTTTGTGTATTTCCTTATCATCTTCATCATGG GAATTTCATTTTCACTATTTTAACTTGGTATAATGGAGTTTGAGGAGTCACCATTTCTCCCAAAGTTGAAATAAAGATAA TTGTGTATTAGAGGCAGTTTGAATACTGACCAAAAGAACACATATTGGAGTTCATCAAGTACTTTTTCTTGTAAATAATC TCCAATAAGTGCTCTTTAGTCGTATCCAAAGTGATGTTGATAAGTAACCGAAATTTGTGATCTTTAAGATGTGATATCTA CCTTGAATTCTTTGATTTGGGTCTTTGACATCATAGTTTCTCAATATCTATGTGTAGGGGCTCAGACGCCTAGCTCAAAA TCGCGAGGCAGCTAGGAAATGTCGGCTACGAAAGAAGGTTGCAAAAATTGAATTTATAAGAAGTTAGCCAGTGTTTATAA TCTCTTATTTGAGCTTTTGTGATTCATAGGCTTATGTTCAACAATTGGAAACAAGCCGGCTGAAGCTCATGCAGTTGGAG CTGGAGGTTAAGAAAGCAAGAAATCAGGTGATCCCAAATAAAAAACCTGTATGCTGATTTCCGCCTTTAATTTAACAAAT CTATTAAGAAAATCACTACTTGCGCGATTTTCCTGAAAACATTCCTTCATCTGCCATGTTTAAGCATATACTAAATTTTC TTCTTGCAGGGTCTATACACAGGCAGTGGATTAGATGTCAGTTATATGGGATCATCTGGAACAATAAACTCAGGTTTGTG ATTCATAATTTTAGTTTTAGATTAGGTCTAACTCTACCTCTAAAGCTAGCTTAGAGATGTATAAACAGTTATTTGACCAT ATTTCGAGTCAATGTGAAACTTCTTTAAGAGTTCTAACCTCCTTATAGCTTATGGCATTATTTAAAATGGTCCTTCTGTC CTGTGAAGCAGGGGTATCTGTGTTTGAAATTGAATATGGACGTTGGGTTGAAGAGCAGGATAGACAGAATGTGGAACTAA GAAATGCATTGCAAACTCATGCACCTGATAACATGCAGCTTCAGATACTTGTTGAGGGTAGCTTGAGCCACTACTCAAAA CTTTTCAAGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTATTCTCTGGTTCTTGGAAAGCCTCAGTTGAAAG ACTTTTTCTTTGGATTGGAGGATCTCGCCCGTCACAGCTTCTAAATGTACATCACACATACTGTTATCTCATTCTATCAA TAATGGGAGATTTAAATAAGTTCTTAGTCCCCTACTTTATAGTCATATTTGGTTGTAGTATACTAGGCTGCGATGAAGCA AAAAAAAAAAAACTCTGCATAACTAGAGATTTTTTTGTACATTGGAAAAATAAATTGCACCCGCCAGGGATTGATCCCCG GACCTCCCCCACCCAACCTACATGTCCCATAACTCTTATCACTTGAGCTATCATTCGGGGACCTCTGCATAACTAGAGTT ATTCAGTACTTAGAACATGATGCAATCTAGTTGCTATAATTGTGAAGAGAATATCTTTTACTATCTGATGTTAAAGACTC TGGTACCATAAAAACCTCTTTCTCTTCCAGATGTGTGACTTCACTTGCTTGTAATGGTTACTGTCTAAACAAGTTCTATA TGTCAATTTTCATAGTACATTTTGCATACTTTTATATAAAATCATACTGAGGAAACCTCAATATCTGAGTTAACATTCTA TATTGTAAAACTACTTGACCTTTACAGATCATTGTACCACAGCTTGAGAACTTGAGTGATGAACAAATTACCAGCATTAA CAACCTCCGTCTATCATCTCAGCAAGTGGAAGACGCATTTTCACTTGGGTTGGAGAAGCTCCAGCAGAGCCTGGTCGACA ACATACTAATTGATCCTCTGGTTGAAGGAAACTTTGGGCTTCAAATGGCTGCTGCCATGGACAATGCTAAAGCTCTAGCA AGCTTTGTAAACCAGGTAAGTGTAGCCTACATTCTGGAGTTTGTTTTCGTCATAATATGAAAAACATGTAACATTCTATG TAGCCTACATTCCAAGAAGTGTTTTGCAAGTATAAATGGAACTGGATAACTATAATCACTTTTAATTCTTCTCTAGTTAG TAGTATCCTCACTAGAGATACCAATTAATTCATAGAAGAAGGTACTAGTGTGTATGATGAAACAATTGCTCACCATATGA ATCAGTATCTGTTAAGAGTTTATTTGCAGTTAACTCCCTGAGGTTTATCATTATTACTAACTTTCCCCGAAGTTTGTTAT TATTGCACTGACTTCCTCTAAAGTTTCTCATTAAAACACAACATTTTATTATCATTTTAAATAATGTATGAAAGAGGAAG TCAGTGCATTGCGCAAAATAAATGGGAGGTCAATGAAATAATAATAAATCTCGGGAAAGGTTAGTTAATTCGTCCTTTCT ACCATTATAAGCATTATTTATGCTAATATTGGAGGTTGTGAGTTGTTACATTTTGAAAGGTGTTTACGTTTGTTGTTTCT CTATATTCAGCAGCATATACCAATGGGCTTGAAAGTGTATTTCATCACTTTCATGTATGTTTGATTTTTCTTAAATAAGA TATCAGATTCAAGTCTTGAGAATTGAACAAACATCTGTCATAAGAGTTAATCCCTATGTAGATGTTCCAGACTCAAACAT GGTTCTGCTAGATTTATATAGATGGGCTTGTGATGCTATTGCTAGCACTGTGTGCAACATTGTGATGTTAAAACCAATAA CCCAAATCAATGTCTTCTCTTCTCCACAGGCAGATCACCTTAGGCACCAAACTCTGCTTTACATGTCTCGCATTCTGACA ATTGGCCAAACTGCTCAAGGCTTGCATGCAATGGGGGGATATTTTCACCGTCTTCGCACTCTTAGTTCTTCATGGGCTGC TCGTTCATGTGATCCTGCATTCACTACTCAAAGCTCAAATTCAGTCTTCTTTGAACCTTAATTGCTGCGTGATCTGCACA ATAGGTGCTTAAGTTTTTATCCTTTTTAGTCCAATATGTTTATATATATGCAATTGCAAGATAATGCTGGCAAGTACCAT GAAGTAAAATTTATACATAATTTGTTGCTCTTGAGAACAACTTGTACATAAAAGTTTTTCATCTTCCACATGAAATTATG AACAAGGAATTATTTTCCCTATTATATGTCGGGAAAATCTAATATGCACAAAAATAGCTTTGTGCAACCTTACACAATCA AATAAATTGTCCATTCTACCCTTAATCAAAAAATTAATCTCATCTTCATCCTTCTCATCATCTACATCATCTTTAACCCA AAACAACCTAGATTCATCCCACCCAAATCAAGTTTAAGAAACATAAAACCCCAACCTCAAGCATCTTTTTCTACCAAACT CTTCATTCAATTCATTTATTGGATTTTGTCATGGCAACGTTGCCTCAGAATTTAAAAGAAAATAAATATAATAACTAAAA AACCAAGGTGACCCCTATAATATGCACCACTTTTTGAGTAGTGTAATTTTA
CDS sequence (LotjaGi1g1v0150600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCGTCATCAGCTCAACTTGTCATCGCAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGACCATGTGGGG GGACAGCTTTAAAATTGATGGTAGCCTGAATTCAATTGCTTCCCCAATGTTTATGATGAACACTAGCATGGAGAACAAGT CTGTATGTACACCTCATGAATCAAGTTCAAGGGAACCTTCTGGAGATGATCAAGAGACAACTAACAAAGCTGTTACTAAG GGGCTCAGACGCCTAGCTCAAAATCGCGAGGCAGCTAGGAAATGTCGGCTACGAAAGAAGGCTTATGTTCAACAATTGGA AACAAGCCGGCTGAAGCTCATGCAGTTGGAGCTGGAGGTTAAGAAAGCAAGAAATCAGGGTCTATACACAGGCAGTGGAT TAGATGTCAGTTATATGGGATCATCTGGAACAATAAACTCAGGGGTATCTGTGTTTGAAATTGAATATGGACGTTGGGTT GAAGAGCAGGATAGACAGAATGTGGAACTAAGAAATGCATTGCAAACTCATGCACCTGATAACATGCAGCTTCAGATACT TGTTGAGGGTAGCTTGAGCCACTACTCAAAACTTTTCAAGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTAT TCTCTGGTTCTTGGAAAGCCTCAGTTGAAAGACTTTTTCTTTGGATTGGAGGATCTCGCCCGTCACAGCTTCTAAATATC ATTGTACCACAGCTTGAGAACTTGAGTGATGAACAAATTACCAGCATTAACAACCTCCGTCTATCATCTCAGCAAGTGGA AGACGCATTTTCACTTGGGTTGGAGAAGCTCCAGCAGAGCCTGGTCGACAACATACTAATTGATCCTCTGGTTGAAGGAA ACTTTGGGCTTCAAATGGCTGCTGCCATGGACAATGCTAAAGCTCTAGCAAGCTTTGTAAACCAGGCAGATCACCTTAGG CACCAAACTCTGCTTTACATGTCTCGCATTCTGACAATTGGCCAAACTGCTCAAGGCTTGCATGCAATGGGGGGATATTT TCACCGTCTTCGCACTCTTAGTTCTTCATGGGCTGCTCGTTCATGTGATCCTGCATTCACTACTCAAAGCTCAAATTCAG TCTTCTTTGAACCTTAA
Protein sequence (LotjaGi1g1v0150600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSAQLVIAKRMDIYEPFHQVTMWGDSFKIDGSLNSIASPMFMMNTSMENKSVCTPHESSSREPSGDDQETTNKAVTK GLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEVKKARNQGLYTGSGLDVSYMGSSGTINSGVSVFEIEYGRWV EEQDRQNVELRNALQTHAPDNMQLQILVEGSLSHYSKLFKMKADAAKADVFYLFSGSWKASVERLFLWIGGSRPSQLLNI IVPQLENLSDEQITSINNLRLSSQQVEDAFSLGLEKLQQSLVDNILIDPLVEGNFGLQMAAAMDNAKALASFVNQADHLR HQTLLYMSRILTIGQTAQGLHAMGGYFHRLRTLSSSWAARSCDPAFTTQSSNSVFFEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 363 | 351 | 1.7E-165 | – | |
| PANTHER | 13 | 363 | 351 | 1.7E-165 | – | |
| MobiDBLite | 53 | 75 | 23 | - | – | |
| SMART | 76 | 136 | 61 | 6.4E-5 | ||
| Pfam | 80 | 109 | 30 | 6.4E-8 | ||
| SUPERFAMILY | 80 | 114 | 35 | 5.06E-7 | – | |
| Gene3D | 80 | 129 | 50 | 1.1E-9 | – | |
| ProSitePatterns | 83 | 98 | 16 | - | ||
| Coils | 99 | 126 | 28 | - | – | |
| ProSiteProfiles | 149 | 360 | 212 | 28.789 | ||
| Pfam | 169 | 242 | 74 | 1.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0150600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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