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LotjaGi1g1v0150600.3

Overview

Field Value
Gene ID LotjaGi1g1v0150600
Transcript ID LotjaGi1g1v0150600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description transcription factor-like protein; TAIR: AT5G65210.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|I3T7J6|I3T7J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:25852203..25856492) extracted from Lotus japonicus Gifu genome v1.2.

TACTCTTAGTATCTAGAAAATTCTCATGTTGTTTGAATGATTCTGGGGACAAACAGAACATTAATCATGTGCAAGCTTTT CTCAATAGTTTTTGATGTTGAGGTTTTATTCAATTTCCAACAGTAAACCCAGCTTCCAGTTTTTCAATGAATTGTCTGTC ATACAAAGTGCTAAGTGCAACTAGTTTTGATACACAATAGAAAAGCATGGTGAAACAAAAATCATGGTGAGTAGAAGCAA AAGTTAAGGGAAGTCGTTTCTGTCAACCATGATTTTGGCTCTCCGTGGTTTTCTACTGTGTACCCGAACATGTGTACTAA GTCTTATTTTCCCCCTAATATCTTGTCTACATTTCTCTAACTTGAGAAATGATTTTGCTCTCTGCATGATTTCTAGTATA TGAGCTCGTCATCAGCTCAACTTGTCATCGCAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGACCATGTGGGGG GACAGCTTTAAAATTGATGGTAGCCTGAATTCAATTGCTTCCCCAATGTTTATGATGAACACTAGCATGGAGAACAAGGT CAGAACACATGAATTTCTCTTTTGTTTGGAGGTTAGCTTCATTTTTTTTGGAAAACTAGTTTACAACTCAGTCTTTTGAA TTGATTTAATTTGTTCAGTCTGTATGTACACCTCATGAATCAAGTTCAAGGGAACCTTCTGGAGATGATCAAGAGACAAC TAACAAAGCTGTTACTAAGGTGATGAAATTTAGTCAGCAAGTTTATCTTTTGTGTATTTCCTTATCATCTTCATCATGGG AATTTCATTTTCACTATTTTAACTTGGTATAATGGAGTTTGAGGAGTCACCATTTCTCCCAAAGTTGAAATAAAGATAAT TGTGTATTAGAGGCAGTTTGAATACTGACCAAAAGAACACATATTGGAGTTCATCAAGTACTTTTTCTTGTAAATAATCT CCAATAAGTGCTCTTTAGTCGTATCCAAAGTGATGTTGATAAGTAACCGAAATTTGTGATCTTTAAGATGTGATATCTAC CTTGAATTCTTTGATTTGGGTCTTTGACATCATAGTTTCTCAATATCTATGTGTAGGGGCTCAGACGCCTAGCTCAAAAT CGCGAGGCAGCTAGGAAATGTCGGCTACGAAAGAAGGTTGCAAAAATTGAATTTATAAGAAGTTAGCCAGTGTTTATAAT CTCTTATTTGAGCTTTTGTGATTCATAGGCTTATGTTCAACAATTGGAAACAAGCCGGCTGAAGCTCATGCAGTTGGAGC TGGAGGTTAAGAAAGCAAGAAATCAGGTGATCCCAAATAAAAAACCTGTATGCTGATTTCCGCCTTTAATTTAACAAATC TATTAAGAAAATCACTACTTGCGCGATTTTCCTGAAAACATTCCTTCATCTGCCATGTTTAAGCATATACTAAATTTTCT TCTTGCAGGGTCTATACACAGGCAGTGGATTAGATGTCAGTTATATGGGATCATCTGGAACAATAAACTCAGGTTTGTGA TTCATAATTTTAGTTTTAGATTAGGTCTAACTCTACCTCTAAAGCTAGCTTAGAGATGTATAAACAGTTATTTGACCATA TTTCGAGTCAATGTGAAACTTCTTTAAGAGTTCTAACCTCCTTATAGCTTATGGCATTATTTAAAATGGTCCTTCTGTCC TGTGAAGCAGGGGTATCTGTGTTTGAAATTGAATATGGACGTTGGGTTGAAGAGCAGGATAGACAGAATGTGGAACTAAG AAATGCATTGCAAACTCATGCACCTGATAACATGCAGCTTCAGATACTTGTTGAGGGTAGCTTGAGCCACTACTCAAAAC TTTTCAAGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTATTCTCTGGTTCTTGGAAAGCCTCAGTTGAAAGA CTTTTTCTTTGGATTGGAGGATCTCGCCCGTCACAGCTTCTAAATGTACATCACACATACTGTTATCTCATTCTATCAAT AATGGGAGATTTAAATAAGTTCTTAGTCCCCTACTTTATAGTCATATTTGGTTGTAGTATACTAGGCTGCGATGAAGCAA AAAAAAAAAAACTCTGCATAACTAGAGATTTTTTTGTACATTGGAAAAATAAATTGCACCCGCCAGGGATTGATCCCCGG ACCTCCCCCACCCAACCTACATGTCCCATAACTCTTATCACTTGAGCTATCATTCGGGGACCTCTGCATAACTAGAGTTA TTCAGTACTTAGAACATGATGCAATCTAGTTGCTATAATTGTGAAGAGAATATCTTTTACTATCTGATGTTAAAGACTCT GGTACCATAAAAACCTCTTTCTCTTCCAGATGTGTGACTTCACTTGCTTGTAATGGTTACTGTCTAAACAAGTTCTATAT GTCAATTTTCATAGTACATTTTGCATACTTTTATATAAAATCATACTGAGGAAACCTCAATATCTGAGTTAACATTCTAT ATTGTAAAACTACTTGACCTTTACAGATCATTGTACCACAGCTTGAGAACTTGAGTGATGAACAAATTACCAGCATTAAC AACCTCCGTCTATCATCTCAGCAAGTGGAAGACGCATTTTCACTTGGGTTGGAGAAGCTCCAGCAGAGCCTGGTCGACAA CATACTAATTGATCCTCTGGTTGAAGGAAACTTTGGGCTTCAAATGGCTGCTGCCATGGACAATGCTAAAGCTCTAGCAA GCTTTGTAAACCAGGTAAGTGTAGCCTACATTCTGGAGTTTGTTTTCGTCATAATATGAAAAACATGTAACATTCTATGT AGCCTACATTCCAAGAAGTGTTTTGCAAGTATAAATGGAACTGGATAACTATAATCACTTTTAATTCTTCTCTAGTTAGT AGTATCCTCACTAGAGATACCAATTAATTCATAGAAGAAGGTACTAGTGTGTATGATGAAACAATTGCTCACCATATGAA TCAGTATCTGTTAAGAGTTTATTTGCAGTTAACTCCCTGAGGTTTATCATTATTACTAACTTTCCCCGAAGTTTGTTATT ATTGCACTGACTTCCTCTAAAGTTTCTCATTAAAACACAACATTTTATTATCATTTTAAATAATGTATGAAAGAGGAAGT CAGTGCATTGCGCAAAATAAATGGGAGGTCAATGAAATAATAATAAATCTCGGGAAAGGTTAGTTAATTCGTCCTTTCTA CCATTATAAGCATTATTTATGCTAATATTGGAGGTTGTGAGTTGTTACATTTTGAAAGGTGTTTACGTTTGTTGTTTCTC TATATTCAGCAGCATATACCAATGGGCTTGAAAGTGTATTTCATCACTTTCATGTATGTTTGATTTTTCTTAAATAAGAT ATCAGATTCAAGTCTTGAGAATTGAACAAACATCTGTCATAAGAGTTAATCCCTATGTAGATGTTCCAGACTCAAACATG GTTCTGCTAGATTTATATAGATGGGCTTGTGATGCTATTGCTAGCACTGTGTGCAACATTGTGATGTTAAAACCAATAAC CCAAATCAATGTCTTCTCTTCTCCACAGGCAGATCACCTTAGGCACCAAACTCTGCTTTACATGTCTCGCATTCTGACAA TTGGCCAAACTGCTCAAGGCTTGCATGCAATGGGGGGATATTTTCACCGTCTTCGCACTCTTAGTTCTTCATGGGCTGCT CGTTCATGTGATCCTGCATTCACTACTCAAAGCTCAAATTCAGTCTTCTTTGAACCTTAATTGCTGCGTGATCTGCACAA TAGGTGCTTAAGTTTTTATCCTTTTTAGTCCAATATGTTTATATATATGCAATTGCAAGATAATGCTGGCAAGTACCATG AAGTAAAATTTATACATAATTTGTTGCTCTTGAGAACAACTTGTACATAAAAGTTTTTCATCTTCCACATGAAATTATGA ACAAGGAATTATTTTCCCTATTATATGTCGGGAAAATCTAATATGCACAAAAATAGCTTTGTGCAACCTTACACAATCAA ATAAATTGTCCATTCTACCCTTAATCAAAAAATTAATCTCATCTTCATCCTTCTCATCATCTACATCATCTTTAACCCAA AACAACCTAGATTCATCCCACCCAAATCAAGTTTAAGAAACATAAAACCCCAACCTCAAGCATCTTTTTCTACCAAACTC TTCATTCAATTCATTTATTGGATTTTGTCATGGCAACGTTGCCTCAGAATTTAAAAGAAAATAAATATAATAACTAAAAA ACCAAGGTGACCCCTATAATATGCACCACTTTTTGAGTAGTGTAATTTTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0150600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTCTGGGGACAAACAGAACATTAATCATGTGCAAGCTTTTCTCAATAGTTTTTGATGTTGAGTATATGAGCTCGTC ATCAGCTCAACTTGTCATCGCAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGACCATGTGGGGGGACAGCTTTA AAATTGATGGTAGCCTGAATTCAATTGCTTCCCCAATGTTTATGATGAACACTAGCATGGAGAACAAGTCTGTATGTACA CCTCATGAATCAAGTTCAAGGGAACCTTCTGGAGATGATCAAGAGACAACTAACAAAGCTGTTACTAAGGGGCTCAGACG CCTAGCTCAAAATCGCGAGGCAGCTAGGAAATGTCGGCTACGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGGC TGAAGCTCATGCAGTTGGAGCTGGAGGTTAAGAAAGCAAGAAATCAGGGTCTATACACAGGCAGTGGATTAGATGTCAGT TATATGGGATCATCTGGAACAATAAACTCAGGGGTATCTGTGTTTGAAATTGAATATGGACGTTGGGTTGAAGAGCAGGA TAGACAGAATGTGGAACTAAGAAATGCATTGCAAACTCATGCACCTGATAACATGCAGCTTCAGATACTTGTTGAGGGTA GCTTGAGCCACTACTCAAAACTTTTCAAGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTATTCTCTGGTTCT TGGAAAGCCTCAGTTGAAAGACTTTTTCTTTGGATTGGAGGATCTCGCCCGTCACAGCTTCTAAATATCATTGTACCACA GCTTGAGAACTTGAGTGATGAACAAATTACCAGCATTAACAACCTCCGTCTATCATCTCAGCAAGTGGAAGACGCATTTT CACTTGGGTTGGAGAAGCTCCAGCAGAGCCTGGTCGACAACATACTAATTGATCCTCTGGTTGAAGGAAACTTTGGGCTT CAAATGGCTGCTGCCATGGACAATGCTAAAGCTCTAGCAAGCTTTGTAAACCAGGCAGATCACCTTAGGCACCAAACTCT GCTTTACATGTCTCGCATTCTGACAATTGGCCAAACTGCTCAAGGCTTGCATGCAATGGGGGGATATTTTCACCGTCTTC GCACTCTTAGTTCTTCATGGGCTGCTCGTTCATGTGATCCTGCATTCACTACTCAAAGCTCAAATTCAGTCTTCTTTGAA CCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0150600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MILGTNRTLIMCKLFSIVFDVEYMSSSSAQLVIAKRMDIYEPFHQVTMWGDSFKIDGSLNSIASPMFMMNTSMENKSVCT PHESSSREPSGDDQETTNKAVTKGLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEVKKARNQGLYTGSGLDVS YMGSSGTINSGVSVFEIEYGRWVEEQDRQNVELRNALQTHAPDNMQLQILVEGSLSHYSKLFKMKADAAKADVFYLFSGS WKASVERLFLWIGGSRPSQLLNIIVPQLENLSDEQITSINNLRLSSQQVEDAFSLGLEKLQQSLVDNILIDPLVEGNFGL QMAAAMDNAKALASFVNQADHLRHQTLLYMSRILTIGQTAQGLHAMGGYFHRLRTLSSSWAARSCDPAFTTQSSNSVFFE P
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45693:SF40
36 386 351 2.1E-165 –
PANTHER
PTHR45693
36 386 351 2.1E-165 –
MobiDBLite
mobidb-lite
77 98 22 - –
SMART
SM00338
99 159 61 6.4E-5
IPR004827
SUPERFAMILY
SSF57959
103 137 35 5.49E-7 –
Gene3D
G3DSA:1.20.5.170
103 152 50 1.1E-9 –
Pfam
PF00170
103 132 30 6.9E-8
IPR004827
ProSitePatterns
PS00036
106 121 16 -
IPR004827
Coils
Coil
122 149 28 - –
ProSiteProfiles
PS51806
172 383 212 28.789
IPR025422
Pfam
PF14144
192 265 74 1.3E-26
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0150600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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