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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0152900 |
Transcript ID | LotjaGi1g1v0152900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein interaction domain protein; TAIR: AT3G16880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIB4|FBK57_ARATH Putative F-box/kelch-repeat protein At3g16880; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0152900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:26590491..26591725) extracted from Lotus japonicus Gifu genome v1.2.
GTCTGCACCAAAATAACGAGCCCTCACCGTTGCAAACTCAATCGTTCTTCTCCCCCCGAATTCTTCTTCTCAATCGAAAG AAGTTAAAGCTCTGACCCCTTCAACAATGGCGATTCCTGATGATGTTGCCTTCACTATTCTGTCAAAACTGCCTCTGAAA TCTCTCAAGCGATTCACGCTGGTTCACAAATCATGGGCTGATTTACTCGAAATCCCTTATTTCATGAGCATGTTCCGCAG CAATTTCTTATCCAAACATCAATCTTATTACGATGATACATCTCTTCTTCTCTTACAGCAGCAGCCATCTGTCACGGTTC ATTGTATTTGCTTTCTGGTGACAATTTTGAGAAAACAGTCAAATCAGATTGGCTTCCATATCAAGAACATAGCAGATTCC TTAGGGTTTCGGGTTCAGGTATTCATGGCATTCTCTGTCTCCATGAAGCACCAGATTATAAGTACACATAATTATTCTTT GTCTGGGAGATATATAGCCTAAGAAGCAACTCTTGGAGGAAACTTGATCCTGATATTCTTATTACTGGAGATGGTCCCTG CTCGGGTCATGAGATTTACATGAACGGAGTGTGTCATTGGTTTGGTTATAGTCAGTCAGATAGCTGTGCTTTGGAGGATA CACATTTGGTGTCATTCAACTTTAGCAATGAGATATTCTATACAACGCCCTTACCATTAGATGATAGAAGGGTGCAGAAT GACTTGGCGGTGTTAAATGAGTCTATTGCGGTGATATCTAATCATGATGAAACAGCAACTTTACACATATCGATATTGGG TGAAATCGGTATGAAGGAATCATGGACTAAACTTTTCACTGTTGGACTTGGACCTTTGCATGGCTTTGAGTTTATTATTG GAGTAGGGAAGATGGGCGATATATTCTTCAGAAATGAAAATGGTGAACTAGTAGCCTTGTTTGATTTAAGTACCCAGATG CTCAAGGAGATTGCTGCTACAGAGCTGGTAACATATTTTGATCAGATGATAATCTATAAGGAAAGCATTCTTCCGATTGG AAGAGCAGGTCATTGATTGTTTTTCTAGTCTAAGCTTAAAGCTTTACTCATTAGATTAATGATGATGGATATTAAGATTT ATTACCATATTTAAGGGTTAGAAGTCACTTGTGTACAAGTTGGCTCTTCAATTGCCCATATCTTATACTTTCAAATGTAT GAGAAAGAAACCATTTGGTAATATGATTCTTGATT
CDS sequence (LotjaGi1g1v0152900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGAGTGTGTCATTGGTTTGGTTATAGTCAGTCAGATAGCTGTGCTTTGGAGGATACACATTTGGTGTCATTCAA CTTTAGCAATGAGATATTCTATACAACGCCCTTACCATTAGATGATAGAAGGGTGCAGAATGACTTGGCGGTGTTAAATG AGTCTATTGCGGTGATATCTAATCATGATGAAACAGCAACTTTACACATATCGATATTGGGTGAAATCGGTATGAAGGAA TCATGGACTAAACTTTTCACTGTTGGACTTGGACCTTTGCATGGCTTTGAGTTTATTATTGGAGTAGGGAAGATGGGCGA TATATTCTTCAGAAATGAAAATGGTGAACTAGTAGCCTTGTTTGATTTAAGTACCCAGATGCTCAAGGAGATTGCTGCTA CAGAGCTGGTAACATATTTTGATCAGATGATAATCTATAAGGAAAGCATTCTTCCGATTGGAAGAGCAGGTCATTGA
Protein sequence (LotjaGi1g1v0152900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGVCHWFGYSQSDSCALEDTHLVSFNFSNEIFYTTPLPLDDRRVQNDLAVLNESIAVISNHDETATLHISILGEIGMKE SWTKLFTVGLGPLHGFEFIIGVGKMGDIFFRNENGELVALFDLSTQMLKEIAATELVTYFDQMIIYKESILPIGRAGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 1 | 129 | 129 | 3.1E-13 | ||
TIGRFAM | 1 | 107 | 107 | 5.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0152900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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