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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0156300 |
| Transcript ID | LotjaGi1g1v0156300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G56530.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|P77804|YDGA_ECOLI Protein YdgA; TrEMBL-Plants: tr|A0A151U1A7|A0A151U1A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0156300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:28185154..28187928) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTATATGTGCAAATGACTAATATGTTGTTTTTTATCTTCTCCTTGTGTTTGGTGGCTAGCAATACAAGCCACAGAGT TGACGGAATGCGACATACACTAAAAAAAGATTTGGAGTTGGAGAGACAGTTAAAACTCATTAACAAGACTCCTATCAAGA TTATTCATGTATTTCATTTCTTTATGAAGGTTTTTTTTTAATTTTCTCTCACTATATGTTTAATATTGTTTTTCTTGGAA TTTGGTATCAACAGACAAAGTCTGGGCAGATTGTTGATTGCATTGATATAAGGAATCAACCAGCCTTTGACCATCCTTTG CTGCAGAATCATAAGTTGCAGGTACGCTTATTTTGAATAATAGAAACTATATATAGTTAATTCTTACTCATTTGTTCTAC GTTGATTGCATTTACCCATCTAATGTTCTTTTGTTAACGGTAGAGAAAACCAAGCTTTAAGAGCATAACGGGAAAAAATA TTGTCAATAGTTCTATTTCCAAACCGGTATTTGGCCTTGGGAAGAATCAATGTCCCACAGGAACTATTCCGATTCGAAGG ACTACAAAAGATGATCTCATTCGAGGTAAATCAGTAGTCAATTATCTTGACGTGAGACCAAGTTTTCTCGACATTCATGT AAGTATTGTACACCTTAACTTTGAATGTTTATTGGTTTATTTTAATTTTGGTGTATTTATGTGAACCTTTTAAAATTACA GCATGCGCAAGTAGTTCTTAAACAAATTCCTGGAAGCAGTTATTTTGGAGTTCGTGGAACTAATAGCATTTACAATCCAA GAGTTAACAAGAATCAATCAAGTTTGTCTCATATGTGGGTTCAAAATGGATCAGAAGATGATCTAAATGCAATTGTCGTT GGGTGGCAAGTAAGTTTTAATATTTCCTTCCTAAAATTTATATCTATATGCAGTGGCTCCCTGAAAAACCCCAAAAAGAA AAACTATACCTCAAAATTAATTGTATTTTCTTCTTTAAAATTTAAATTTATAATGAGGAACAAACAAACTCCATTATTTT TGTTTGTTCCTCTGAAGCTGTTTAGCATATTACAAGGCAGCAAATAAAATTTAGAATAAGTGAGTTGGACAAGTTCATGT CACTAGTGCAAATGTGTCATTCATCGACACGACCCTAAATATTTAGAATTTAAAATACATGTTTTTTAGCAGAGGGCCAT GTCTTCTCCTAGTCCCAAACGTTGTTTCACCTGGGTATATTTGACTTATTAATTAACGTCAACATAACTTATTAATTAAC GTCAATTTAATGATATAGAAAATAATATCTAATTTACCTTATACATTAATTTAATGGTATTAGGTGTCTCCAGATCTCTA CGGCGATGATCGAACTTATCTTTTCACATTCTGGACGTCGGTACGATATGTTCTTAGTAAAATAATTATTTAGACATTGG AGGTTAACTGAAAGATCATAATGTTTCATTACTTTGAAATTTGGCAGTCAGACAACTCGAAGAAGACTGGATGCTACAAT GTATTATGTCCGGGTTTTATTCAGATTGACAAAGAAGTCTTCATCGGAGGAGTTATTGACAAAACATCTGTCGACGGTGG ACCACAGTTTGAGATGACGGTTTCTCTATCACAGGTCTTGTAAACTCTATTAAATTTTTAGTATAAATGGGTTTAGATTA GTTTAATTTTTTAATTTTTTTTTTTTGCTTTTGAGTAAATATTCATCAAAATTAAACTACTTACTCTAAGGTCACCGAAT GATAGCTCAAGAGGTAAGAGCGGGGACATATGGGTTGGGAAAGGGAGATTCAGGAATCAATTCTTGGAGGGTGTAATTTA CCTTTCTAGTGTACCAAAAAAAACTACTTACTTTAAGGAAAATAAGAAAGACTATACACATCTTTTACAAGATTTATATT GATTCAAGTTCAAAATTATTCATTCTTAAATAACTGAAATGAAAACTATTTTATGAGATGTGTGAAGGTTGGTGATGATA AATTAATAAAATATTTTCTTAATGTTTTTCAGGACAACATAACAAAAAATTGGTGGGTGATTATCAACGATATAAACATT GGATATTTTCCAGCAGCTTTATTCTCCAACTTGAATTCAGCTTCTCTATTGGGATGGGGTGGAAGAACAACTACTCCACA TGGAACTCCTAGTCCTCCAATGGGATCAGGACAATTTCCTGATGATCACTTTTCTGATGGATGTTATTTTAAGCATATTT CATATCAGGATGAATCTAGTGAACATTACGAACCGGATGATTATTTGATACGTACATTCACAGACAAACCTAATTGCTTT GGCGCTAAATATTATGGACATTGGGAACAAGTTGAATATTCTCTCATATTTGGTGGACCTGGTGGTGAATGTGGAAATTG ATTAATGTCTTTCTCATGTTTTAATTCATTTTCAAAAATAAATAAAAATAACATTGATATCATTACTGAAAACAACTCTT TTCCTACGTTGATTCAAATGAATTTAAGTTTAGGGATTATTGTGTGGGTTGACTAAAAAACAATTCAACGACTCCTTAAA CAGGCGATTACTCAAGGAACATAATTTGTTCCTCAATGGAGGTTATGAAGATACTTCAAAAATCTCTTAGATATTACTAC TTGTGAATACCAAATTTTTGCCTGAGTTTTAATTAATTTAGTAGATATTTAGTAAAAATTCTAAAAAGTAGAAAATTGGA AAATGACATAAAAATTGTAAAGTTATGGAATAAAAAAATATAAAAATAGTTACAC
CDS sequence (LotjaGi1g1v0156300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAATATGTTGTTTTTTATCTTCTCCTTGTGTTTGGTGGCTAGCAATACAAGCCACAGAGTTGACGGAATGCGACA TACACTAAAAAAAGATTTGGAGTTGGAGAGACAGTTAAAACTCATTAACAAGACTCCTATCAAGATTATTCATACAAAGT CTGGGCAGATTGTTGATTGCATTGATATAAGGAATCAACCAGCCTTTGACCATCCTTTGCTGCAGAATCATAAGTTGCAG AGAAAACCAAGCTTTAAGAGCATAACGGGAAAAAATATTGTCAATAGTTCTATTTCCAAACCGGTATTTGGCCTTGGGAA GAATCAATGTCCCACAGGAACTATTCCGATTCGAAGGACTACAAAAGATGATCTCATTCGAGGTAAATCAGTAGTCAATT ATCTTGACGTGAGACCAAGTTTTCTCGACATTCATCATGCGCAAGTAGTTCTTAAACAAATTCCTGGAAGCAGTTATTTT GGAGTTCGTGGAACTAATAGCATTTACAATCCAAGAGTTAACAAGAATCAATCAAGTTTGTCTCATATGTGGGTTCAAAA TGGATCAGAAGATGATCTAAATGCAATTGTCGTTGGGTGGCAAGTGTCTCCAGATCTCTACGGCGATGATCGAACTTATC TTTTCACATTCTGGACGTCGTCAGACAACTCGAAGAAGACTGGATGCTACAATGTATTATGTCCGGGTTTTATTCAGATT GACAAAGAAGTCTTCATCGGAGGAGTTATTGACAAAACATCTGTCGACGGTGGACCACAGTTTGAGATGACGGTTTCTCT ATCACAGGACAACATAACAAAAAATTGGTGGGTGATTATCAACGATATAAACATTGGATATTTTCCAGCAGCTTTATTCT CCAACTTGAATTCAGCTTCTCTATTGGGATGGGGTGGAAGAACAACTACTCCACATGGAACTCCTAGTCCTCCAATGGGA TCAGGACAATTTCCTGATGATCACTTTTCTGATGGATGTTATTTTAAGCATATTTCATATCAGGATGAATCTAGTGAACA TTACGAACCGGATGATTATTTGATACGTACATTCACAGACAAACCTAATTGCTTTGGCGCTAAATATTATGGACATTGGG AACAAGTTGAATATTCTCTCATATTTGGTGGACCTGGTGGTGAATGTGGAAATTGA
Protein sequence (LotjaGi1g1v0156300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNMLFFIFSLCLVASNTSHRVDGMRHTLKKDLELERQLKLINKTPIKIIHTKSGQIVDCIDIRNQPAFDHPLLQNHKLQ RKPSFKSITGKNIVNSSISKPVFGLGKNQCPTGTIPIRRTTKDDLIRGKSVVNYLDVRPSFLDIHHAQVVLKQIPGSSYF GVRGTNSIYNPRVNKNQSSLSHMWVQNGSEDDLNAIVVGWQVSPDLYGDDRTYLFTFWTSSDNSKKTGCYNVLCPGFIQI DKEVFIGGVIDKTSVDGGPQFEMTVSLSQDNITKNWWVIINDINIGYFPAALFSNLNSASLLGWGGRTTTPHGTPSPPMG SGQFPDDHFSDGCYFKHISYQDESSEHYEPDDYLIRTFTDKPNCFGAKYYGHWEQVEYSLIFGGPGGECGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 6 | 389 | 384 | 1.1E-160 | – | |
| PANTHER | 6 | 389 | 384 | 1.1E-160 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 391 | 370 | - | – | |
| Pfam | 50 | 134 | 85 | 5.6E-24 | ||
| Pfam | 167 | 385 | 219 | 2.5E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0156300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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