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LotjaGi1g1v0163000.2

Overview

Field Value
Gene ID LotjaGi1g1v0163000
Transcript ID LotjaGi1g1v0163000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT5G55690.1 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FIM0|AGL82_ARATH Agamous-like MADS-box protein AGL82; TrEMBL-Plants: tr|A0A151RE42|A0A151RE42_CAJCA MADS-box transcription factor PHERES 2; Found in the gene: LotjaGi1g1v0163000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:30638983..30645015) extracted from Lotus japonicus Gifu genome v1.2.

TAACAAACGGCTATATTTTCCATGACTCACTGTTGAAACCCTAACACACCCACTTTCGATTTTTCTCTTCTACTTTGCAT TCATTGATTAATTCAATGACATTCTTCTTCCTTAATCTTTCGTCTTTCGTTTCCAGTTACCGTTCATTGTTTTATCCGAA AATGGGTCGCGCCAAAGCAATCATGAAGCGAATTCAAGATAACAGAGTTCGTAAAACAACGTTCTTGCACAGAAGAAAGG GGTTACTCAAGAAAATGTCTGATTTTTCCACCATTTGTGATTCTCAATCCAATGCGTGCCTCATTGTGTATGATGGTGAT GGTGCCCATGATTCCACACCTGAGATTTGGCCCCAAAACCCTACAGTGGTACACTCGGTTCTTCAAAAGTATGAGTGTGA GAAGAATAACAAGACTACTCCTGTCATGAAATTCGAACTTGAAGAATTTTTTGAGACAAAGAAGAAGAGTGTTGAAGATG AGATTGCCAAAGTGAAAAAAGAAATCATCAATCTCAAGTTTCCCACTTGGGACCCTATTTTTCTGAGTCTTGGAAAAGAG AGGTTGGGGCCACTCATTGCTGAATTGGATGCTAAGATCAGTGCTTGTGATCAAAGGGTTAACTTGTTAAAGGGCATGCA AGAAAGTGAAGTGATCAACGCAAACATGGCTCAAGAGGAAGAAGATATCTCTGAAACCCATGTTATCTCTGCTCCTATTA GTCCAGTTATTGATGGAATGGTGGATTCTACTGAACAAGTAAATGGGCATTTGGAATGTACAAATCAAGTTATTGATGAA ATGGTGGATTCTACTGATCAAGTTAATGGGACTTTGGATTGTACAAATCAAGTTTTTGAGCCAGTGGATTCAGATAGTGG GCTTGAGGAGTGGGCTTGCAAATTTCTTGAGAGTGATTATTGGGCTAATCAACAAGGTGAACCAGTGGATTCGGCTAGCG GGCTTGAGGATTGGGCTTGCAAATTTCCTGAGAGAGCTAATCAACAAGGTGATGATTTTCTGTGGTGGTTTGATGAATCT GATGAAGATCTTTTCCAGAATACTCCTTTCAGTTGCAGGATCAATGAATAGATTTTAAATATATTAGTATTATTGGAGGA AATTGGGGTTTATTGGGGTTTTATTCTTTGAGGTTTGCTGTCTTAGCAAGGATTGTTTTATAGGGATTTTGCAAATGTGC AGTGTTGTTCTGCTTATTTCCTGTTTGGGTGCTGTTTTGGACTGGTTTTCTTGTGGTGATCCTGCACAATTTTTAGGATG TTTTTATCCAAATTGAGAATGATTGTTTCTCAATGCCATTCTTTCAATCTATATATGTTTTAAATTTAAGCTCTGTCATT CAAGATCTTGAATTAGATTTTGAGTTTCAAGCCTTTGAATGTTTTCTATATCATTTTTCTGTATTTCTAGTTTTGTTTGT TTTTCTTTTTTTAATTTGTCATACTTTACAAGTGTGGAAAGAGAACTTATAAGCAAGTTATCTGTAAAGCTTAAAGAACC TGATAGCAAAAACACATTCAAGTCCAAAACACAAATTGTTCTTCTTCTCCTTGATTTTTATATATCAGAACGAGCTTCTT CTCCTTGATTTTTATATATCAGAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGTGAGTGATATTTTAGATTTTAGTTTCTGGTTTGGTAATTGGTATTGTGTTTTGTCTTAATATATAAGAAGTT AGCTATTTCAATTTGTGGAGTCTTTGCTGTTATCTTCAAGTAAAGTGATATGTGAAGAGTCTTTCTATGTATGCCTGTCT AATCAGATTTTGTCAGCGGTTTTAGCAACGATGGTGAATGAGTTTAGTTTTTGCATTCATTTTTCAGGGTATTGGTATTA AGGAAAGGTATTACCTTGTGCTGAGACAGAAGCTTTGAGGGTTCTTTGTCAATTTTTTATTTTAGAGCTTTTGATTTCTA TCTGGGGCCTGGAGTTTGGAGGTATGGATCTATATTTTCTATCTTATCCTCTTCGAAAGACAATTATGTTTTTATTATTA AATCAAAATTTTTATTATATTTAGTCCGTTAACAAAGATGTTGGAAAAACACCAGGTATGGGGTATTTTGTCTCTCAGAA TCATGATGTTGGAAAAAGTGCCGACTTGACTGATATATAGGGTTGTGTTTGCAGAGCTTGATAGGTGAAGATGCTAACAT ATGGAGAATCCAGAATTCACTTTAAGAGGGTATTGCAAGTCGGGACTGTGTGATCCTGTTAATTCCTCACCATGATGTTT TGTCATGCTTTATTATGTAATCTGTCATTCTCAGTAAAATCTTGGTTTTTTTTGCTGTAAATTTTATAGGGCTTTTCCAT AGGATCGAGATGCACATATTGAAAGCATTTTGACAGAACATTGCAGATCGATGAACTCTTACATGTGACATGGACGGATC TCTAACCTTTTCATGGATCACGAACATGGAACTTTGAGCTCCATCAGATATGGTCGGTTCATGCTTCCTGAATCTGGGTT TTGCTGAAATGAGGGGTTCGTATTATTATTTCCTTCCCTGACACAAGGTGTTTGGATTTCTGGTCTTAAGCATAGTTTTA TTCAGTCTGGTCATATTCATATCAGCTAATTTCTCTTGCTGCAACTCATAACTATAGTTAGCCTTGCCTAATGCTAATCA TCTTGCCTTCGCTTGGGCAGCCTGAAGATCTGTATATCTCAAGACTGAGAGATCAAAGATGATATGTCTAATGGAGGAGA AAAAACCTGAAGAGAGGAAAAGCTCAAGCTCTGTTTGAGGTGAGTTTCTGTTTGATTACTGGAGCATCCTTATTTTGATC ATCTTCAATGGTCTAAGTGTTGCTTAAAACTAGCTATAAGAATCGTGCAATATCATGAAGCTAACATCTCCATTAGATTT ACTATCATTGGTTCTCAGGCCAGTTCATTGCTGGTTTTGTACTTTACTTTATATTAATCATCATTCAAATTCATTTTTGC AGCTTCCTCAACCACCAACATTGCTAGCTTTCCTTTCTTTCATTGCACCATTTTTTATTTTACCCTATTTTAGTCTCATC TTCTCTTTCGGTTGGCCAGAATAGGAACTTACATGCTTTCTTTGTGTTCGTTTGTTTTTTTCTTATCAGATTTTGTGTTC ATAGGTCAACTTCGAGATCGACAAAGCAATTAGAGTGTGCAAAGTACTGTTTTATTTGAAATCTTGGTACACATCTGAGT TCACATTAAATTCATTGAGCTTGCTTACATTAGTTTATTTTGCTTTATGATAAAATGTTTTAGTGTTTTAATACAAAACA GTGAAGTCCACACACAAATGAATAAATAAAATTTGAAAGCTAGGAAAATACGAAAGAAATTCCTATGAAGTTTCTTAGTG GGCTTTATAGGCTGTCTATCTGGTGATCTTTTACTGTGATGTGCAAAGACAAGTGTGCTATGAAAACAAATAGAGATGTT ATTTGAGATTATTTATTTGAAGGATAATATTGATCTTCTTCATCTTATAATTCCATTGCTTCTATATTTTTAGGTATGTA CATAGTTACCAAAGCTATTTGTGGAACTATGCAGCAAGTACAAGGGTGCAAAGATATGGTAATGTGATCTTCAATAGTTT TCAATGACCACAGTGTTTTCACGGTCATTGTAACTTTAAATTATAGAAATGCTTAACTTTGTGCAGGTTCGCTTTGTGTT GTGTGATCTTTCTTTTCAATGCTTAACAAATTTCCTGGTTCCATTTGTTTGGATTTTCAAGTGAATCAAGTATTCTAATG TGATTGCAGGATGGGGAACTAAGGAGGATCTGATCATATCAATCTTGGGTCATCGGAATGCTGCTCAAAGGAAGCCTATC AGGGAAACTTATGCTGAAACTTATGGAGAAGATCTTCTCAAGGCCTTGGACAAAGTTGACTAGTGACTTTGAGGTACAGA AAAGTGTAGGTCAAATAGTTATGAAAGATCTAAAACCAAACCAAGATGGTATGTCTTTAGACATGATTTGTGAAATGAGT CACATCATTGTTTAGATCCTCATAATCAAACCCAACTGATTGGTAAAGGCCTTTATTGAAGTTGTTGTTGATACCTGTGG ATGTACCTGTACATGCCTAGATGTGCAATATTTAATTGATCGTGCAACATATCACACTGATTTTATCTTAAAGCCTAAGT CATGGTTAATTGAAGTTTAAATACATTGGTATAGTTAAAACCTAGCTTAAGGGCCAACTAGCCAAGAAGACTTAATAAGC TGATTAACCGTGTGACATGATGTCAAATTGTTTCGTAATGAGAACTGATTATATCACTAAATGCATATTATTTTGAGTGT ATATAACTGATATGCACTATGAATTTTCTCCTCACTAGAGGCTGGTTCACGTTTAGGCCCTTGATTCTGCTGAACGTGAT GCATTTTTGGCAAACGAAGCAACTGAGAGATGGACTTCAAGCAATCAGGTGCTGGTGGAAATAGCCTGCACTAGGTCCTC TGAACAATTGTTTGTTGCGAGACATGCTTATCATGCTCTTCATAAGAAGTCTCTTGAGGAGGATGTTGCTCATCATACAA CAGGGGACTTCCGTAAGGTACTGATTCTTTACCATAAACTTTAACAAGTTGAAATGAACATTGAAGACTCATGTTGCTTA TATGTATAATTCTTGGCTTATAAACGGTAAATATATAACATATCTTCACAAAAAAAGAACTCCTTAAATGGTCTCTCAAG AGTGTTTTTTAGTGAATTAGAAATGGTTAGGAGGTTAGTTGTATATTGTCCCAAGTTATGAGATGTGTACGTATGTATCT TCAGCTTAAGGGCCCAGGCAAAAGGTGAAAAATCCGGATACAGTAGGGCCACCAGTTTGGTCACCCAAACCTACAAAATC TAACGACGCTGGATCATTGAAGGCTTTCTTTGTCCATCTTCATCTTATTTGTTTCTGTTTTTTCTATCTTTAATGATTTT TTCCTGTTAATATTATTGATGTATGACATACTAGATTTAAAAGCATAGCCCTTATTTCACCAGAGAGGGTTTTATCTTTA ATAATTTATCTTTAATGAATTTGACAAATTATGAGGGTTTTGTATGTATTATTTGGTATTGATATTGTTCATTCTTTTCA CCAGAGACCTACACTCTGTTACTTGGAGTTGGAGATTTGCAAGTTCTGTCTGTATCAGATTTGGGTTTATTCCTCTTCCG TGTTCAGTGTCATTGCACAAAATGAATATAAAAAGCTTGCAAAGGAGATTCCCAACAGAAAATAAATAGAATTTACTTTA CTCAATCTGCATCTGGATTGTGCAGAATTGACTATTCTTTATCATCTTGACTATACTCAATTTGTATCTGCTGTCAAGGG TTTTACAATTTCTTCTTTTTCTATTTCTATTTGGATTGTGCAGTGGATCAACTGATAGAAACATAAGCATTTGGAAGAGA GATGCTTTTGGGTGAAAGAATTAGATCAGAACGCAATGGTATTTTATTAGCTCTTCAATTATTGAATATGTCTCTTTTGC TTCAATGATTATGGTCATGTAGATTATTTCCTATCTAATATGATTTTTCATCTTCAATTAGTGCAGCATGTTGACACCAC TGACTCTACTATGCTGCCAGCTGAAGAATCACAAAAGTGGTTGAGCAGAAACTTTTATTTTTCCTTTTCTCAACAAGTTT ATGTTGCTAGGTTCATATGAAATGCTATTGGGAGAGGAAATGTCAGAGCCGAGATAGAGATGGAATTGGAAGCTCAACTA GAATAATAGAATTTTGAGATCATGTTTCTTGGAACAACTTCGCTGTGAGGATTTTGTTTTTCTAAGTATTTTGTATAGTG AACTTATGTTTGCTCATTTATCAAACAATCTTCTGGGTTGTAGGTTGTCTCTGATTTACATTTCCAGCTTTTTGTTGAAC ACTTTGTGGTTTTAGTTCAATGCAGAGAATGTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0163000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACATTCTTCTTCCTTAATCTTTCGTCTTTCGTTTCCAGTTACCGTTCATTGTTTTATCCGAAAATGGGTCGCGCCAA AGCAATCATGAAGCGAATTCAAGATAACAGAGTTCGTAAAACAACGTTCTTGCACAGAAGAAAGGGGTTACTCAAGAAAA TGTCTGATTTTTCCACCATTTGTGATTCTCAATCCAATGCGTGCCTCATTGTGTATGATGGTGATGGTGCCCATGATTCC ACACCTGAGATTTGGCCCCAAAACCCTACAGTGGTACACTCGGTTCTTCAAAAGTATGAGTGTGAGAAGAATAACAAGAC TACTCCTGTCATGAAATTCGAACTTGAAGAATTTTTTGAGACAAAGAAGAAGAGTGTTGAAGATGAGATTGCCAAAGTGA AAAAAGAAATCATCAATCTCAAGTTTCCCACTTGGGACCCTATTTTTCTGAGTCTTGGAAAAGAGAGGTTGGGGCCACTC ATTGCTGAATTGGATGCTAAGATCAGTGCTTGTGATCAAAGGGTTAACTTGTTAAAGGGCATGCAAGAAAGTGAAGTGAT CAACGCAAACATGGCTCAAGAGGAAGAAGATATCTCTGAAACCCATGTTATCTCTGCTCCTATTAGTCCAGTTATTGATG GAATGGTGGATTCTACTGAACAAGTAAATGGGCATTTGGAATGTACAAATCAAGTTATTGATGAAATGGTGGATTCTACT GATCAAGTTAATGGGACTTTGGATTGTACAAATCAAGTTTTTGAGCCAGTGGATTCAGATAGTGGGCTTGAGGAGTGGGC TTGCAAATTTCTTGAGAGTGATTATTGGGCTAATCAACAAGGTGAACCAGTGGATTCGGCTAGCGGGCTTGAGGATTGGG CTTGCAAATTTCCTGAGAGAGCTAATCAACAAGGTGATGATTTTCTGTGGTGGTTTGATGAATCTGATGAAGATCTTTTC CAGAATACTCCTTTCAGTTGCAGGATCAATGAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0163000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTFFFLNLSSFVSSYRSLFYPKMGRAKAIMKRIQDNRVRKTTFLHRRKGLLKKMSDFSTICDSQSNACLIVYDGDGAHDS TPEIWPQNPTVVHSVLQKYECEKNNKTTPVMKFELEEFFETKKKSVEDEIAKVKKEIINLKFPTWDPIFLSLGKERLGPL IAELDAKISACDQRVNLLKGMQESEVINANMAQEEEDISETHVISAPISPVIDGMVDSTEQVNGHLECTNQVIDEMVDST DQVNGTLDCTNQVFEPVDSDSGLEEWACKFLESDYWANQQGEPVDSASGLEDWACKFPERANQQGDDFLWWFDESDEDLF QNTPFSCRINE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11945
23 198 176 5.7E-49 –
PANTHER
PTHR11945:SF564
23 198 176 5.7E-49 –
SMART
SM00432
23 83 61 4.7E-11
IPR002100
ProSiteProfiles
PS50066
23 83 61 15.292
IPR002100
SUPERFAMILY
SSF55455
23 101 79 1.05E-13
IPR036879
CDD
cd00266
24 100 77 5.82143E-16
IPR033897
Pfam
PF00319
32 76 45 1.4E-10
IPR002100
Gene3D
G3DSA:3.40.1810.10
35 135 101 1.3E-7
IPR036879
Coils
Coil
116 136 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000981
Molecular function DNA-binding transcription factor activity, RNA polymerase II-specific A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
Subterm of
GO:0000987
Molecular function Proximal promoter sequence-specific DNA binding Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0163000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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