Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0167100
Transcript ID	LotjaGi1g1v0167100.1
Lotus japonicus genome version	Gifu v1.2
Description	GRAS family transcription factor; TAIR: AT1G21450.1 SCARECROW-like 1; Swiss-Prot: sp\|Q9SDQ3\|SCL1_ARATH Scarecrow-like protein 1; TrEMBL-Plants: tr\|A0A072VGC8\|A0A072VGC8_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi1g1v0167100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:31787586..31792155) extracted from Lotus japonicus Gifu genome v1.2.

AATATCTCTTTGTGTAACTTGAATCGGAGTGTGAAGAGAACATTATTTTACTATTTCCCCCTTGTTCCAATGTTTATATC TATACTAATTTATTTTACAGATTGTGAAACCAATCCTTAAAGTTCCTTCTTGTATTTTTTTAATCTAATTTGTTGCTTTC CACCAAACTGACCTTCCAATTCAAACAATTTTTTTAATATATTAAGGAGTCATCAAGATGTTGTTATGCCTTCTGGCTTG GCTATAATCTCTCTAGCACTTGGTCCAAAGCTTCACCTGAGTTTCTTTCTCTACCTTTTGAAGCAACAATTCTTAGGTTC ATCCTCGTCTATCTATCTGTGTGTGTGCCCTCTGACACAGGGCAAGGACACTCATCTGGTCTTGGTTTCTTGTTGCATCA GGTACAGTTTTGTCTCTTGTTTTTTTTGTTTTCAACCTCTAAATCTTGATCATGTTTTTTGGTCACTTATTTGGATAAGG TATGCCATCTGTTGCCATCCCAGTGATTGATTAATTGTGAATTGGAGTAAAGGAAAAAAAAAGATAAATTTGTGAACTTG GTCTTCATGTGTTTGTTAAAAGAGCAAGTTTTGGTTTTTCTTAACATGGGTAGGTTTTTGCTGTGTTTCCAATTGGTTTT GGTTTAATCTTTTCTGTTTCTGGGTTTGCAATATGCACTCATCTTTTGAATTGGGATTTCAAAAAAAAAAGACTTGTGGC TATCTAATCAAACTGAAATGGAAATGGAACTATGGTTGACTATTGCATGTATAGAAATTCTTCTACAATTGATTCTGAAG TCAAAATTAATTCCGTGGAGAAACTTATGTGAGCAGCTTCTGGGCGGAAAAATTGATTATGAGGAAAGAGAAACTGATCC AAACATGCTAAAGGCTGTTGCTTGAGTTTGTTATGTGTTTACATCATATGCTATGTGCTCACTTCAGGAGATCATTTCTG TGCTTTCTGGCTAGAGTCATATTGGAATAGCAAACATTTTATCAGCCTCGTTCGTAGAAATTTCTCATGTTCTTGTGGCA TATAAGTTTCAAGATTAATTCCTGAAGCATCTTAGATGAATATGAAATTTTATGTTTCCTTTGCATTCTGTTCTGTTTTC AATATTGCATTTAGTTAGTGAATTGGTTTTGTAATCCAATTGGTATATGCAGACAGAGAACCTTGTTGTGTATATGGGTG TATCTTCGGTTTTTCTTTATTTCCTCCAAACAGTGAGGCCAACATCTTGGGAATGATACAATATATTTTTATCTGCTAAG GTGGAATTTTATCTGCCATGACAACTAATATTTTACCTCAGTTAATTACTAAATTTTGTGAAAAAGGAAATCTGAATTCT CTTTGCTAGACAAGTGTGATCATAGTTACTACTTTAATAAATTCATAATCGTGGTTGTGGTCTAATGATGAACTACCTAC AAATTCTGATTATGAAAAACCCACAAGTATCAAAGTATTATGTTATAATCATCCAAGTGATCACAAAAAAGAAAACTAGT TGTCAACAGCTCTACTTTTTTAGATAAAAACTTTTAATTGAAATAATTATCATCTAGCTAGTTTATTCATAAGGGTCTCT TTATGTAAACTACTAAACTCGTAAATGTATCAAGTATATTTTGCCATGTTGACATGGATTTGATGTTCTAACTGAAAGAA TCTTCTTCTTTTGTTTCTCAAATTTTAGCAAAGTCGTCCTAGAAAGTTGAACAAGATTTCATCAGTTAGCTGTGGCCTAT TTTGCTATTTCTCAAGGTGAGAAAAGTACAAGATATATAGCCTGGGAATTTTAATTGATTGCAGAATTCACAGCATTTTC TTGACTAATCTGTGGGGTGTTTTGGTTGCAGATTACACAGACTGAAATTCTTGAGCTGACTGAATAAAACGCAAACTATG TCACTGGTTATATCGGCAGAGCTTGCTGATACATCATATAGGAATGCCAAGCTCTACACAATAAAGGGAACCGATGTGAA ACCTGGCTTGTCCTCCAATAATTTTGTACCTGATAAGCACAGAAACATGTACATGACAGATTCATATTCCAGAGAGAGTT ATGAAAAGTATTTCCTGGATTCACCAACAGAAGAACTGACATCAAGTTCCAGCATATCAGTAAATTCAATTCACCATGAT GCTGCTTCTTCTTACCAGCTCAGGGCTAGTCCAGGAGCTTCTATGGTTTCTGATAAACCATTTGATACTTCTCTCATGTC TACAAGGAATCATGATGCCTATGAGTCCGACTTCGTATCAGATTTCTTGGATCATGAAAGCCCGGATTACCTTGAAGTTG ATGGTGAAATGCGATTAAAACTACAAGAGTTGGAGAGGGCGTTGCTTGGTGATAATAATGATGACGAGGATGAGGGAGAG GAAGAAGAAGAGGAGGACATGTTTGGTACTTTCCAAAGCATGGAGATTGATGATCCTGACATAGCTGTGTGGGCCGACGC TGATCCCATTCAGAACATGCTGCTCCATGACCATGACTCACCAAAGGAATCTTCATCCTCAGATTCCAACATTAGCAGCA TCAGCAGCACCACCAAAGAAACATCTCAATTTCAAAACTCTCCTCAGACCCCGAAGCAATTGCTTTATGAATGTGCTAGT GCTCTTTCAGAAGGAAATAAAGTGAAAGCCTCATCTATGATAAATGATCTCAGGCAGATGGTCTCAATTCAAGGAGATCC TTCCCAAAGAATTGCAGCATATATGGTGGAAGGCCTCGCGGCTCGCTTGGCTTCATCCGGAAAATGTATATACAGAGCTT TGAAATGCAAGGAGCCTCCTTCTTCAGACCGTCTCGCAGCAATGCAGATACTATTCGAGGTCTGCCCGTGTTTTAAATTT GGATTCATCGCTGCGAATGGTGCCATTGCAGAGGCTGTGAAGAATGAAAAGAAGGTTCACATCATAGATTTTGACATCAA CCAAGGAAGTCAATACATAACTCTAATACAAACACTTGCTTCAAGGCCAGGCAAGCCACCCCATGTGAGATTGACCGGGG TTGACGATCCTGAGTCCGTGCAGCGATCTGTCGGAGGCTTAAACAACATAGGACAAAGGCTCGAAAAGCTTGCAGAAGCA CTTGGGTTGCCGTTTGAGTTTCGAGCTGTGGCATCAACTACTTCTCTTGTCACCCAATCAATGCTCAACTGTCGCCAAGG GGAAGCTCTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGAGATGAGAGCGTGTCAACAGTGAACGAACGGGACC AGCTCCTTCGCATGGTGAAGAGCCTGAATCCAAAACTTGTGACGGTTGTGGAGCAGGACATGAACACTAACACCTCTCCT TTTCTGCCGAGATTCATTATAGCGTACGAATACTACTCTGCTGTGTTCGACTCGCTTGATGCCACTCTTCCTAGAGAGAG CCAGGACAGGGTGAATGTGGAAAGGCAGTGTTTGGCGAGGGACATTGTTAATATTGTCGCGTGTGAGGGCGAGGATCGGA TAGAGAGGTATGAAGTTGCTGGGAAATGGAGAGCAAGGATGACAATGGCCGGGTTCAATTCTTCCCCTATGAGCACAAAT GTGAAGGAAGCAATCAGGGAACTCATTAAGCAGTACTGTGACAGGTACAAGATGAAGGATGAAATGGGGGCACTTCATTT TGGGTGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAAGTGACCATTATATTTCTTTTTGTCCTTCACGGATTACG ATCCGCTCATGCATGTGAAACTTGTCTGTCTATATCTCTTCATAAATATTAAGATACTCCTACTTATTTAATAATTATGA AGAGAAAGATGGACACAATTTCATCTCAACATTTCACTGTCGTGTGAAGTTTCCACATGAGAGGATTCTGATCCGTTAAC CTGAGAAATGATAGTGTTAATGTAGCTTTGTTTGTTTGTTTAGTATATTATTATGTATGTGTTTAAACATGGTCCAGACT AAGCTAATACGAACTTTGGTGTAATCCAAGTATTTAACGCGGCTGGAAGACAATGGAGTAGGGACCACATAAACCAGCTA TGCTTAGGCATGCAATGACATCATTCCTTGTTAGCATCATTTTGCATCTCCGTCTTTTGCGTAACAGCTCAACATTGTGC CTTATCTTGTTTATTTTCATATTGGTTAGGACGTCACGTACCCATGTTGACATCTCAATAGCTTTTGTTGACATACTAAT AGCGCTTTTGACAGTTACTCCCTCCGTCCCCATTTATAAGTCACATTTTTTGAGTTTTTTTTGTCCCTAATTATAAGTCA CTTTGTGATACCAATGCACCATTTAATATTTGTTTCCAATACTAACCTCATATTTAAGATGAAAGAGGTAGTTATATTTG AAAAGTTTTAATTTGGAGAAAGAAATTCTAAGGGTGACATTGGAAAGCCTATGTTTTTGTCTTACAAATGTATTGCTTTT AACTATTTATCTTAATCTAAGATAAGTAGTTAAAAGAGACTTATAATAGGGGACGGAGGGAGTATGTTATATTGACAAAT CACGTTGAGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0167100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCACTGGTTATATCGGCAGAGCTTGCTGATACATCATATAGGAATGCCAAGCTCTACACAATAAAGGGAACCGATGT GAAACCTGGCTTGTCCTCCAATAATTTTGTACCTGATAAGCACAGAAACATGTACATGACAGATTCATATTCCAGAGAGA GTTATGAAAAGTATTTCCTGGATTCACCAACAGAAGAACTGACATCAAGTTCCAGCATATCAGTAAATTCAATTCACCAT GATGCTGCTTCTTCTTACCAGCTCAGGGCTAGTCCAGGAGCTTCTATGGTTTCTGATAAACCATTTGATACTTCTCTCAT GTCTACAAGGAATCATGATGCCTATGAGTCCGACTTCGTATCAGATTTCTTGGATCATGAAAGCCCGGATTACCTTGAAG TTGATGGTGAAATGCGATTAAAACTACAAGAGTTGGAGAGGGCGTTGCTTGGTGATAATAATGATGACGAGGATGAGGGA GAGGAAGAAGAAGAGGAGGACATGTTTGGTACTTTCCAAAGCATGGAGATTGATGATCCTGACATAGCTGTGTGGGCCGA CGCTGATCCCATTCAGAACATGCTGCTCCATGACCATGACTCACCAAAGGAATCTTCATCCTCAGATTCCAACATTAGCA GCATCAGCAGCACCACCAAAGAAACATCTCAATTTCAAAACTCTCCTCAGACCCCGAAGCAATTGCTTTATGAATGTGCT AGTGCTCTTTCAGAAGGAAATAAAGTGAAAGCCTCATCTATGATAAATGATCTCAGGCAGATGGTCTCAATTCAAGGAGA TCCTTCCCAAAGAATTGCAGCATATATGGTGGAAGGCCTCGCGGCTCGCTTGGCTTCATCCGGAAAATGTATATACAGAG CTTTGAAATGCAAGGAGCCTCCTTCTTCAGACCGTCTCGCAGCAATGCAGATACTATTCGAGGTCTGCCCGTGTTTTAAA TTTGGATTCATCGCTGCGAATGGTGCCATTGCAGAGGCTGTGAAGAATGAAAAGAAGGTTCACATCATAGATTTTGACAT CAACCAAGGAAGTCAATACATAACTCTAATACAAACACTTGCTTCAAGGCCAGGCAAGCCACCCCATGTGAGATTGACCG GGGTTGACGATCCTGAGTCCGTGCAGCGATCTGTCGGAGGCTTAAACAACATAGGACAAAGGCTCGAAAAGCTTGCAGAA GCACTTGGGTTGCCGTTTGAGTTTCGAGCTGTGGCATCAACTACTTCTCTTGTCACCCAATCAATGCTCAACTGTCGCCA AGGGGAAGCTCTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGAGATGAGAGCGTGTCAACAGTGAACGAACGGG ACCAGCTCCTTCGCATGGTGAAGAGCCTGAATCCAAAACTTGTGACGGTTGTGGAGCAGGACATGAACACTAACACCTCT CCTTTTCTGCCGAGATTCATTATAGCGTACGAATACTACTCTGCTGTGTTCGACTCGCTTGATGCCACTCTTCCTAGAGA GAGCCAGGACAGGGTGAATGTGGAAAGGCAGTGTTTGGCGAGGGACATTGTTAATATTGTCGCGTGTGAGGGCGAGGATC GGATAGAGAGGTATGAAGTTGCTGGGAAATGGAGAGCAAGGATGACAATGGCCGGGTTCAATTCTTCCCCTATGAGCACA AATGTGAAGGAAGCAATCAGGGAACTCATTAAGCAGTACTGTGACAGGTACAAGATGAAGGATGAAATGGGGGCACTTCA TTTTGGGTGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0167100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLVISAELADTSYRNAKLYTIKGTDVKPGLSSNNFVPDKHRNMYMTDSYSRESYEKYFLDSPTEELTSSSSISVNSIHH DAASSYQLRASPGASMVSDKPFDTSLMSTRNHDAYESDFVSDFLDHESPDYLEVDGEMRLKLQELERALLGDNNDDEDEG EEEEEEDMFGTFQSMEIDDPDIAVWADADPIQNMLLHDHDSPKESSSSDSNISSISSTTKETSQFQNSPQTPKQLLYECA SALSEGNKVKASSMINDLRQMVSIQGDPSQRIAAYMVEGLAARLASSGKCIYRALKCKEPPSSDRLAAMQILFEVCPCFK FGFIAANGAIAEAVKNEKKVHIIDFDINQGSQYITLIQTLASRPGKPPHVRLTGVDDPESVQRSVGGLNNIGQRLEKLAE ALGLPFEFRAVASTTSLVTQSMLNCRQGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTS PFLPRFIIAYEYYSAVFDSLDATLPRESQDRVNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMTMAGFNSSPMST NVKEAIRELIKQYCDRYKMKDEMGALHFGWEDKNLIVASAWK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31636 View details on PTHR31636 Search for proteins/transripts with this domain View external data on PTHR31636	9	601	593	2.3E-291	–
PANTHER	PTHR31636:SF186 View details on PTHR31636:SF186 Search for proteins/transripts with this domain View external data on PTHR31636:SF186	9	601	593	2.3E-291	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	147	168	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	151	168	18	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	195	231	37	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	206	231	26	-	–
ProSiteProfiles	PS50985 View details on PS50985 Search for proteins/transripts with this domain View external data on PS50985	223	602	380	97.868	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03514 View details on PF03514 Search for proteins/transripts with this domain View external data on PF03514	233	602	370	9.0E-137	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0167100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0167100.1