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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0167200 |
| Transcript ID | LotjaGi1g1v0167200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small RNA degrading nuclease; TAIR: AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5; TrEMBL-Plants: tr|I1LXA9|I1LXA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0167200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:31793704..31801150) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCATTATTTTCTCATGTTGTGCTGGTACAACAAAAAAGACTAGTTCTCTCAATCTTCATGCTTCTTAAAGAGAGACT GTGTCATTAATATTTGAGTCTTAACACCGAAAAATGTTATTTGGACAAAGCTAAAATTCTTTATGCCAAATTATTGACCG CTCTTTTGAATTTAAATTAGAGATTGACCTTCCCTCTTTACCCAAAAATTTACCGCTCTTTTCAATTTAAATATAGATTA TATCATATCACTTTTTGTTATACTACAATTTACTAATGCAGCTCTCTCATGATTGCAGAATAAACCTCTTATTCCCAAAG TGGTGATGCTATATATGCCAGGCTTGGATGCAGCTTTGTTCTTGTCGCAATCTAAAATGCTTCCCAGTCTAAAAAAATTC TGTGGCAAACCAAGGCCAGTCCTAGCTCTTAGGTCTGTAGAAGAAAATGTATTTACTTCTAATATCCTTCAAAATGTAGT TCCTATTGACTTATTTTTTCTTATTTTGGCTAGCTGTGTATCAGATGGTATGCAGACAATAGATGCACTGCTAACATGCA AGGTGAAAAGAAAGAGGGATGAAAATTGTTCAATTATGACGAAAGCTACTCTGACACCACAACAAGGTGTTCATTCTTTA AACCATTATGTAGTAGTTTCATTTGCTTGGGGAAATTATGTCTTGAATCTGTCTGAGGCTTTTTCATTTTTGTGGTACGG GGAGGAGAATAAAAATCCAAGGAAGGCTTTGTCTGAAGTTTGTGTAGTTAATTTTCCTCTTGTAACCAAAAACAAATGAA GCTGTTAAAACTAGCCTTTTATTTTGATAGCTTTCTCCCCTCCCAGCAAAGTAACAGTATACAACTATGACTGGAAGTTG TCAACTTGTCATATAGTTGATACAGATCCTATATTTTTCCTATTTAATCAATTTGATTCTTAAGCATCTTTATACAACTG AAGAAGAATTAGCACAATCCTGTTTAACCTATTGTGTATTGTTGATGAATGTTGATGGATATGAATTGAAAATTTAAGCT ATTAAATTCAAATTTACTAGGGGATGGCTATTTTATACATTTTTTTTTTCGTTTTGTGATATCTGTAGTATTGGGCGCTA AGGAACATATCAACTTGTTTATTTGCTTGACATAAACTTGGCAATGCTAGGTTTATTTTACCACCTTCTTAATACTTTGT AATATGTGTGTATGGTAAAATTAATTGAAGTATTCTGCCCTTTTCCTGTTCGAGAAACTTTATTGGAGCTATTCTTTCAT TTGTCATGAACATGATTGCATCGCTATCGTTTCAAAGCGACTATATAACCCATTTGAATTTGGATGCTAGTTGAAATATC TGACGTATCCTTGCAGAAGATGGCTGTGTTGGTACTAACAGTCTATCATATATGGAGCTAACTAAAGATATACCTTTCCC TGTCACGTACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATTCTATTAATAAGCCAGGTGATTTTTACTCTG ACACATTATACATGTTAATCTTCATTATCATTTGCTTACTGGATTCTTTTTATTTTGCCATACAGGTTTTCTTTCTACTT TGCCTGCTCCTTTGGGATCTCCTTTTCATGAAATGTTAGCAGTTGATTGTGAGATGGTAAGTCGGTCGGTAACAGCTTGG TTTGAAGATAATTGTGTTTTTTTTTTTAACTTTTACAAATAAAGTTTTTGGATGATGATAAACTTATCTAGATTTGGTCA TCAATAGGAGTAAGTCTTTCTGTCATGTATGCTTACTGTTAAGCTCAGGTTATAGAATGTTTGCTTACTAGAGTGAAAAC AAACATGTTTAAGTTGGTGATTCATGTATTGTGTTCATAATCTTAGAGGGTATATGATATAGTATTTTCTTTCAAATTTC TTATCTGCAAAACAAAGTAATGATTTTTTAAATCATGAAACTTAACAATTTTAACACCCTCTTCAAATCTGGAAATCCAC TACTGGAGCATAATAGTTATTTCATTCCCATCATTTTAGTTTCACTTTAATGTTGTCTTGAACTCATTTATCTTAATGCG CAATTGCTTGATTAATTGGGATTGATCATTAAGAGAAAACTCAATGCTACTATATTCTTTTCATATTCACAAAATTAAGG TGGAGGTAACTGAAAATCAGATTAACTGAAATTTTATTGGAATGCAGTATATACGGACAAACTTTTGAAGAGCATCATTC TATATTTAGTAAAAATTGAAGTAGCTGCGGTATTTTTTATTGGTATCTTGTAAGTCTATAATCTTGGTCAATCATTTTTT GTTTTCTGCCTTTTCTTATTAGTGTGTAACAAGCGAGGGTTTTGAGCTGACAAGAGTTACTCTGGTAGATGTTAAAGGGC AGGTATTGACTGAACTTACATTTGTACTCTGTAAAAAAAATGTACTATTGATTACTATCATTGAGATGATTGATCATTAT TTTTATTTATTTTCACTAGCCTGATCTCGCACATCTTGTGTTGGTTTCTTAGTAATATATAAATTGGCATGTATGTTCTT ACTACAGCATGTTAATCATGGAAGTTGTTTTCTCAGCACCTGTTAACGTAATCGTGAAACTCAATGTTATGTTGCTTATC ACCTTTTCATGGATATCTTTTCCTTGTAGGTGTTAAAACAACCTTACATTTTATTGTTAATGGTGGTTTACATATTTGCT ATTTAAAAAGGCATGCTATTGTGTTGGGATTCTGTTTTGGGTTTCCTTAAAGAACTTGAAGTAATCTTTTTACATAGTGA GGCTTCGTGAACTCGCTAAAATTTGAAACATTTACTTAGTCAGTGATGTCGCATTTCCTAATATTTTAAAACTTATTTTT CTTTTCAGGTTTTGATAGATAAGTTAGTTAAACCAACGAATGCTATCACTGATTACAACACAAGGTAAGCTTTTTGCTTC TAATGCCCCCCTCCCGAAACTTTTGTTTTTGTGAGCTTATCATTACGTGTACTGTGTAAATTTTTTATTTGGAACATTTT TCTATGTTCCTTTTCCCTTTTGGTGGGGGATAGTTCAACTATTCAAGGCTGAGACTCTCACCTGATTATAAAATCTTCCA ATAAGGCTCTATTGTATTTTGTTATGTTTCAAAAACATATATGTATGGCTTCGTGATTTCCATTTAATTTGGGGTTAGTT TTTTTTTTTTTTTAAATGAAGAGATTAAAATGATTTATAATATTTTGTTGTTTCTAGTTCTAGAAAACCCTGACTGGGAG ACTATTGGATGATATTCTCCAATGTAGGGATTACTGTAGTCTATTTATATTGAAAGCATAGCCAAAAAAAGATTGAAAAA AAAAAATTGAAGGTGAGAGGAATAATGAACAAAAAGCTATTTTTTATTTTTATTTTATTTTCATATGATCTGTTTTTTTA TCTTCCTTGGACTTGAATCAAAATTGTTGACAGCATGTAATGATTATGTCATGTGCAGATTTAGTGGAATAACATATGAG ATGTTAGATGGGGTGACAACAAGTTTGAGAGATATTCAGGTTGTTACTTGAATTGTCTTGATTTGTTTATTTTTATTTTT CTTATTTCCGTTAGTGTAATATTTTTCTTATTGCTGTTATTGTGTCCAACCAGAAAACCAGTTCAGTTTGAACTATTTGT TTTGCTGATTTAGTTTCAATTGCTTCATATGTTCAGGAAGAGTTTCTAAAATTGGTTTACAAAGAGACTATCCTCGTTGG CCACTCTTTAGAAAATGATTTATTAGCGTTGAAAATATCCCATGACTTGGTCATTGACACAGCAGTATTATACAAACACC CACGAGGGTCATCTCATAAAACTGCTCTACGGTTTCTTGCTAAAAGATTTCTTAAAAGGGAGATACAGCAGTCAGGGAAT GGGCATGACAGCATTGAAGATGCTAGAGCTACCTTGGAATTGGCTCTATTGAAGATAAAAAATGGTAAGTAGTTCTTTTG AATGCATTTATGCTACAAGCTTTCTATTAGAAGTTGTTAAATGCATTCCAAATTTTAGTACCTATGCAGTTTCATCATCT TTGTGTTCAGAAAATGCATGGAGAGCTGTTACAATCCTGATGTTTGTGTTTATGTATATGTATAACTATATTTATGTGCA AAAATGTGTGTTCATTATTAAAGTTTTTATCATAGTTGTTTTGTATAGCCCGTTTATCTCTATTTTTGAAGTAATAATTC TTTTTTTTTAAATCACTTTAATCTTTTGTCAAGTCTTTAGGCATACTTTTTATAAAAAACCAGAATTTTAAAAAACCAGA AAACTGATTGTTCATTGAACCTTGTTTTTATAACTTTAACAAAGCAATTCTAGAAGAGAGAAAATTAAAATTCCTATTTT TTAGGTGACACTATCTTAATTAGTATTACAAAGTTATCCTTAATAATTCCTCATTATAACAACTGTCAACTGAACCTCAA TTTTTTCCATTCTTATCTCTTTAAGGTTCCTCATCAAATGTTCTTCGGTGTTATCACCTGTTTTTTTGCTTTATTAAAGG TCATTTTTTGTTTGTTATATTTGTAAGTTCTAGCTCTCTAAAAAAGTGATTTTAAAATTTTTCCAGAAGTCTTTTTACAT CCAGAGTCCATTTGTGATTTTATTTTAAGAAGCGTATTTTGAATTGTTTGGATGAAGATAATGGTTTTGAGACTAGGTGC ATCCGGTTCCAAGACTGATGACTGATCGACTGTTTTGACCCCTTTTGGTTGTTGGGTCTGCTGTTTTTGATGCCTCTCTC CGCTGCTTTGTTCTCGCTGGTCCTCTTTGTGTTTCGGCCAGGCTTGGTTTTTTGGGTCCGTTATTTGGCTATGTTTTGAC ATGTATTGTGGCGCCACTGTTGTGATCATTCGGTCTTCCTCTTCTAGTGCCCTGTTTGGTTCGTGGGTCTACTGTGTTTT TTCATCTCCCTGTGACATATCTTGCTGTTTGAGTTCTTAGTTTGCGTCTCATCGTTCGAGATGGTCTTATTAAAGTGATC TTGGCCGACTTTATACAATTAGGTTTTGAAGGTGACACCTTTGTATGTGGTCTTCGTATGGTTCACTCTCGATTTTTGGT TTTCTGGTTTTAGGGCTTCAGCTGCTGTTAACGCTGGCTCACTCTCTAGTTTTCGCGAGTTATCAATGTCAAAGTTGACA CCATTATTTGTCTCAGAAGCCATCAATTGATCTACCTCAAATCATAGTAGTCAATCGCAGCAAATCGCACCATCGCGTCG CGGCCCCTCCCTGCGATTCTGAAACAATCGCGTCGCGGATCACCGTCGCGGCTGGAGCGGCGCGATTCGCGGCCAAAATC GCAGTCAATCGCACCAGATCGCGGCGCGACAGGGAGAAGAGAAGGGGAACTCGCGGAAAAACCTAAATTGCCCTTGAAAT TTTACAATTAGGTTAAACTTTGAGGGTATTTTTGGGATTTCGCTTCTGAATAAATGAAACGCGCGTTTCATCTCACTATT CATCTTCTTCTCTCTTCTGCGACCAGAACCCATGGTCATTGTGCGACCTCCTTCAGCCACCGTCGATCAGCACCCATGGC CACAGCCCGACCTCCGACAGCACCGTCCAACTTCCGGCGAACATTGTGCGGTGGCTTTCAGCCTATCTCCGGCGACCACT GCCCCTGTTTCCCTTTGGCCTCTGTTCTGCTCTGTTTTTTTTTTATCTTTTCATTCCTCTAATTTTCTTTCCTTTCTTTT CCTCTTTTTTTTTTCTATTCTCAATCATTTCATTATGTTACCCTTCAGTTCTCTCCTTCCAGCAGGGCATCCTCCTCTCT TCTCTATCATTTCATCATGTTATGTATTTTAAGTTATATTTATCATTTTTTAGTAATTATATGTATATACTATTAAACTA CAAATTATATAAAATTATATATGAAAAATCAGAATAGCGGCCATCCCGCCATGCGCTATCCCGCTATCCCACTTTTTTGG TCGGCTGCTACGTGCCGCTATCCGGGATTGATTACTATGCCTCAAATGTTTTTGTGTGGGTGCTGCTGGTTAGCTGTTGC TTCAGCCTTGTTTATTTCTGGGCGTATTGTTGTTGGTTTTTCGCCCTAGTTTGCTGGCTCAGCTGATCCTACGATACTCC AAAAGAATTAGTTGTTTACTTGCTTCAATTTCAGCCAGATCAAGTATGAGAAGTTATCTTTTGTGGGCCCATGGATTTAG CAGAAGTTCGAAAGGTTGACCTATTCGATTCAGATATTCGCAAAGACCGTCATTATTAAGAGATACCTATTAGGATATAT CTTGTTGGGATAGATAGGTTTGTTACAAGCTTAAAGCTAAGTAAGCTTTAGCTTGAGGGGGAGTGTTGAATATCTCTTAT TAAGATTGAGTTTATTATTAACTTATCTAATAGAAGTAGAGATAAGGTTTAGATATAGTTATTCTCTATTTTAGATTAGT ATCTATTAAGATAGAGATAGATTTAGTTTTTATCTCTTTGGTATGTCTATAAATTTTACAAGTATGTTGTTGAAATACAT AGAGTAACATTTTCATCAGATTTAAGTCTAACTTTCTGTAACCTTTATATTTACTTAATTTGCTATATTGTTTGTTAGCA TCACTGCTGTGACATACTTTTGGCTTCACCCTTGAAACAGGGCCTGACTTTGGTTCCCCTCCTAACTTCATGCGGAAAAA GCTCCTTTCCATTTTGAGCGAATCTGGCAAAACTTCCTCATTGATTGATGATATATCCGTTGTAAAACGATTTGCCTCTG AGTCCTCTCATGCAATTCCAGTTACATCTGATGAAGAAGCACTTGCAAAGACAACCAAGGAGGTAGATGTCTTAGCTGGC TCTATACTCTATTTGCTATTGGATTCCTTCCTGATTTAACAACTACAGCTAAGCTTTATGTCCACACCTTTTTCCAGTTG AAGAATGAAAAGGTCCATTTTATTTGGACACAGTTTTCAGAGTTATACTCATACTTGAAGAAACAAGCTGAGGATTCAGA GAAACTGCATAAAAGACTTGCAGAGATGATGGCATTACGAACGTGTGAGAAAGGGAAAGGCTTCAAGTACAATGCATCTT CCGAACTGAAGGAAATTCTAGCTCGCATGGATGCTAGAATTCGTAATCTGTACATGTCATTACCAACAAATGCTATGGTG ATAATTTGCACTGGTCACGGAGACACAGCAGTTGTTCGCAGGTATATGCATATCTTGTTTATGCCTAAGTATCTTTTTAT TTCTTTTTGCTAGTATACGTTTTTCACCTTACAATATAGTCAGAGAAAATTAATGTTTGATCCCGGAATGGTGTATTATT TTACAATTGAGTCGTCATGAGCAAGTTTTGTTTTCATGCAAATATGCTAATGCAATTTATTGATTCCCCTGTGGAGGTGG ACCCTAG
CDS sequence (LotjaGi1g1v0167200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATATATGCCAGGCTTGGATGCAGCTTTGTTCTTGTCGCAATCTAAAATGCTTCCCAGTCTAAAAAAATTCTGTGG CAAACCAAGGCCAGTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACAATAGATGCACTGCTAACATGCAAGGTGA AAAGAAAGAGGGATGAAAATTGTTCAATTATGACGAAAGCTACTCTGACACCACAACAAGAAGATGGCTGTGTTGGTACT AACAGTCTATCATATATGGAGCTAACTAAAGATATACCTTTCCCTGTCACGTACTATACACTAACAGAGAAAGATCTGGA AGAGAATGGATATTCTATTAATAAGCCAGGTTTTCTTTCTACTTTGCCTGCTCCTTTGGGATCTCCTTTTCATGAAATGT TAGCAGTTGATTGTGAGATGTGTGTAACAAGCGAGGGTTTTGAGCTGACAAGAGTTACTCTGGTAGATGTTAAAGGGCAG GTTTTGATAGATAAGTTAGTTAAACCAACGAATGCTATCACTGATTACAACACAAGATTTAGTGGAATAACATATGAGAT GTTAGATGGGGTGACAACAAGTTTGAGAGATATTCAGGAAGAGTTTCTAAAATTGGTTTACAAAGAGACTATCCTCGTTG GCCACTCTTTAGAAAATGATTTATTAGCGTTGAAAATATCCCATGACTTGGTCATTGACACAGCAGTATTATACAAACAC CCACGAGGGTCATCTCATAAAACTGCTCTACGGTTTCTTGCTAAAAGATTTCTTAAAAGGGAGATACAGCAGTCAGGGAA TGGGCATGACAGCATTGAAGATGCTAGAGCTACCTTGGAATTGGCTCTATTGAAGATAAAAAATGGGCCTGACTTTGGTT CCCCTCCTAACTTCATGCGGAAAAAGCTCCTTTCCATTTTGAGCGAATCTGGCAAAACTTCCTCATTGATTGATGATATA TCCGTTGTAAAACGATTTGCCTCTGAGTCCTCTCATGCAATTCCAGTTACATCTGATGAAGAAGCACTTGCAAAGACAAC CAAGGAGTTGAAGAATGAAAAGGTCCATTTTATTTGGACACAGTTTTCAGAGTTATACTCATACTTGAAGAAACAAGCTG AGGATTCAGAGAAACTGCATAAAAGACTTGCAGAGATGATGGCATTACGAACGTGTGAGAAAGGGAAAGGCTTCAAGTAC AATGCATCTTCCGAACTGAAGGAAATTCTAGCTCGCATGGATGCTAGAATTCGTAATCTGTACATGTCATTACCAACAAA TGCTATGGTGATAATTTGCACTGGTCACGGAGACACAGCAGTTGTTCGTGGACCCTAG
Protein sequence (LotjaGi1g1v0167200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVLALSCVSDGMQTIDALLTCKVKRKRDENCSIMTKATLTPQQEDGCVGT NSLSYMELTKDIPFPVTYYTLTEKDLEENGYSINKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQ VLIDKLVKPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKH PRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSESGKTSSLIDDI SVVKRFASESSHAIPVTSDEEALAKTTKELKNEKVHFIWTQFSELYSYLKKQAEDSEKLHKRLAEMMALRTCEKGKGFKY NASSELKEILARMDARIRNLYMSLPTNAMVIICTGHGDTAVVRGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 386 | 386 | 5.0E-129 | – | |
| PANTHER | 1 | 386 | 386 | 5.0E-129 | – | |
| Gene3D | 130 | 291 | 162 | 4.4E-54 | ||
| SMART | 132 | 291 | 160 | 5.7E-48 | ||
| SUPERFAMILY | 133 | 286 | 154 | 4.61E-32 | ||
| CDD | 134 | 283 | 150 | 1.46373E-92 | ||
| Pfam | 135 | 281 | 147 | 8.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0167200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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