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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0171700 |
| Transcript ID | LotjaGi1g1v0171700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT5G53190.1 Nodulin MtN3 family protein; Swiss-Prot: sp|Q6NQN5|SWET3_ARATH Bidirectional sugar transporter SWEET3; TrEMBL-Plants: tr|I3SYF2|I3SYF2_LOTJA Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi1g1v0171700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:32720486..32725226) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAAATTTACCATATATTAACGAAATGTGAAACTCCTCATCACACTAAACATTAAGTTTTGCCAAAAAAAACTTCACA AGCATTGCTTTCTCGCAAAATGTGACCAACACCAGTGGTCTAGTATGGTGCTAATAACTTTAATATCAATGAGAGTAGCC TATCTATGATGGGAGAAGAAGCGTGCTCAATTGAAGAAACTGCTTGAAGCGAATCTGAAAAGCAAATCAGAAGGATGGAA GCTAAGTCACCCTTTCTAAGTCACAGATAGCTCATGGAAAATTGCTAACAATGTCATATGAAGAATATCAGAATCCTAAA GAAATCATGAAAGCCAATTAACCAGTTAGCATACTCGTCAATCGGATTCTGGGACACACTACCAGGCCATCAACATTAAA CGCAACAAAGAATGTTTGAGGGGGAGCTCATTTAGCTACTCTAGATCTACAAAGGTAGTGGATTAGTCCCTTAACTATGC ATTTTGAGATATATGATTCATATGAATAAGAGATCATTACTTTTAGCAATTACTATTATACCTAGACACAAGAGTAAGAC AATACTTCACATACATCCAATTTTTCACTAATTTTATTTCTTCTTATCGCATATATAAGCCACTTTATATACACCATATT TTTCTCTCTCAATCGTTTTTCCATATCGATCGTATCATAAAAATTACAAGAGTTGATATTTGGTATGAACAGTGCGACGC CAACTATACATAGGTTATCTAAGTCGACATAGAATGATATTCTTCTTGCTACTTGAATGGCATCACCAATGCAGAACCAA ACATTGAAGAAGCATCAGAAACCCATTGCTAGAGTCTGGGATGCGGATATTGAGTTTCCACTCTGTGAAGCCAATTAGCT AGCAAATAGCTATACTGACAAGACTAACATAAAGGGGATTTCATATCAAATCTTCACTAAACTTTTTTTCTGGATTATTC GCATTGAAAACTTAGGGTTTGCATGTTGAACCAAAAGGTATCTACCTTCTTAATTTGTGGTCAATATATATTTTTCTTTC TTAATCATGAGGCATCATCATCATCAACAAGATAAACCCACTTTTTAAGCAGTGAACTAGAATAGTATTGATCAGATGAA CTTGTTAATGGCACATCTAAAAGCCCTTTAGATCAGATGAATATAATTTATATTCCACATACTGGAAAGTTTTTGTTTGA AGGTTCACAGAATTCTTGGTGATGCTTGAATTAGAATAATAAAATTCCATATCGTATTATTCTGTTTTAGGTGTTTCATT CAAGTTAGTTTAGCTAATAAGTAAAATTATAATTTATTCGTTGAGTTTAATTACTATGCACCGACGGTGTAAAGTTTTTT TACACCGTCAGCCAATCAGATTTCAAGAATGTGAGAAAATCTCTCATTTTATTTAATTTCATTAATTGACATGACACATC CTTGAAATTTGATTGGTTGACGGTGTAAAAAAACTTACACCATCGGTCCATCATCTTTTTCTCTTATTCGTTTACCATAG AAGACATATTAAGCGTTATAATAATGATAACACATATTGGGATGTCACACCCCATTGACATGCAAGAATAAAAAACCTTG CCCAAAGCATCATTTTTCTTTTACTTGTTTTTTTCGTTTTTCTCCTCTTCATACTTCAAAAAATGTTTTCATTTAAACAA AGAAAGTCAATTTCCAAACATGGAAAACCAACAATAGTCCAATGAACTTAATCTGTGGCTTATAACCAAACAAATTTCCA TGTCTCAAGAAAATGGAAGCCACATCATCAATAACAGAGCATTTCATTTAGTAATGTTTCTTCACACATTATTGGTATCT ATAATGCTTACCCACATAAAAGCATAAGGCACTTAACAAATTGTACCCAAAAAAACAAATTAAAGAAGGAATATAGCCAA CATATTCTAAATGACAAAAAATTTCAAGTGACACGCAGGAAATATGTCAAAAAGAGATGATGCAAATCTAGTGCTATTTA CCACTCTTATGAAAGTTAGTAGCAGACTAGCATATGTCTTGCTTGTACAATATGTTACCTTCTAAAACTGTAAAATAAAT GGAATTACATATCAGCCTGAGTGTACTGTAGAGCAACTTGAGAGAAAAGTTTCTCAAGTATAATAAAAAAGCAGACATCA CTCATTCACTCACTCTCTCTCTTAATTTGTTTTTCAATTTTGCATATTCTTTTTTCTTATTCTTTCTTTACCTCTATTTT GAGCCTACTCCTAGGCTTCAAGTCTTCAACAGTGCTCTTCAAGTGTTATAAATAGAGCATCCTCTCAAGTGTCATACTCA AGTGGTACACAATATTCATCCCATTTCATTAGAGAGAGTAAACATCTAAACATGGCAGAACACTTTCGTATGGTCGTTGC TGTTATTGGTACTTTTTCTTTTCATGCCACAATTTCTTAGCATTCTTTAGTATTAATGTCTTCAATAAAAAATTGACCCA TGTTTATTACAGGGAATGTTGCCTCAGTGTCCCTCTATGCTGCACCAACGTATGTTACACAACCCACTATTCTAGAACTC CATACAATGCATATGTGGATAAATTGTGATAAGACCAAAACCATGATGGACAGTCGCAAAAGCTAACAAAATTGGTTTCT GTCCATCATGATTTTGGATTGTTGCTGTGATTTTTCACTCATTATCTAAATATGCCCATAGTTCCTTTCATCTTCTCCCT ATGAAGTATTAACCTTTGACATGACTTAATGATTAAATTTTAATTGTGCAGGGTTACCTTCAAGAGAGTGATTAGGAAAA AAAGCACAGAGGAATTTTCATGCATTCCATACATCATAGGACTATTGAACTGTCTCCTTTTCACTTGGTATGGATTGCCT GTTGTAAGCAACAAGTGGGAAAATTTCCCTCTGGTTACAGTTAATGGAGTTGGGATTGTTTTTGAACTATCCTATGTCCT CATTTATTTCTGGTATTCTTCAGCAAAACAAAAGGCAAGTTCTTCTCTTCATGCACAAAGACAAATTAGAGGGTCTTACA AATTTTACTAGTTGTTTAATTTTGAGACAAAAAATTCAAAACCAAATAAATATTAACAATTATGTGGTTTAATAAAATTA ATGTTAATATAAGTTATATGGTTGCTGAAAGTGATAAGTTTTTACTTTCAACAGGTGAAGGTAGCAACTACAGCAATACC AGTCATTCTAGTGTTCTGCGCCATTGCTTTGGTATCGGCTTTTAACTTCCCTGATCATCGTCACCGGAAGCTACTAGTTG GTAGTGTGGGCTTGGGGGTTGCAGTAGCAATGTATGCATCCCCTTTGGTTGCAATGGTGAGTCTTTTTTATCTCCCACTC TGATTTTTTGTTAACATAAAAGGAAACACAGACAGACAAAGCAAAACCAAAACAGGGGAACAGAGGAGTTTAATGATTAA TGTTTCCTTACCTACCATTGAGCTGGGAAGAGATGAAGTATGAGATATTATAGGTGATATGATAAGAAAGGAGGATAAAG ATAGAAACAAAAATGAATGAAAATAGTAGATAAAAAATGAAGTGTGAATATATTAAAATTCATAGTTTAATACGGTAAAT CAGCAAGAGGTGTGCTAGCGACTAAATCCACTTTGTACATTATTATACATTTACATTTTAAAAAATATGGTGAGATGTGA TTTGATATGTGTAAAAAATGGTGAATATTTTAGCATTTTTCGGTCTCTTAATTGAAATTTTAAGTCCACAAATTTATAAA TTACAAAATTTTATTACATAAGATAAGATGAAATATTTAGAAAAAATAAGTATGAATATTCTCCTCCATTTTAAATGGGT TTAGAGAAATAATCATTTTATAATTATCAAGTCCTAAGTTAAAACTTAAAAGCGTGTAGTAGTAATTAGTAATTGATATC TCATGACTATCTTAATTGATAATCATAATTGTAAAAACTTTTTTTTTTCGCAAAAAGTACAGTAAAAAGTTTTTACCATA ATGAAATTGCTAATTATTAAATTTGTGTAAAAATTCTAATTGATAGCTCAGCAATTTGTTTCCACTTTACAAGAATAAAT TATAGCCTTCCATTACATAACTTTCAATTCTTTTGATTATTGCAGAAAAAAGTGATACAAACCAAGAGCGTGGAATTCAT GCCACTCCCTTTATCTTTGTGTTCATTCTTAGCTAGTGTGTTGTGGCTCACATATGGACTTCTCATTCAGGATATATTCG TTGCGGTTCGTATAATTAATATTAGTATCTATTTATCTATAAATTAATTTCAACAAAAATCTTACTAGGAAAATGTTGTA GACATGCACTGATGTTTTGTTCCACCAATCATATGACAGGGACCAAGTTTAGTTGGAACTCCCTTGAGCATCCTGCAGCT GGTTCTCCACTGCAAATACTGGAAAAGGAGAGAAATGAAAGAACCAATTAACAACAAGGTGGAGCTGCACAAAGAGAACA TGGAGAAATTGGACTTGGAAAAAGGGGGATTATTTGAAACGAAGGACATTGAAGAAAAGAATGTGACAATTCTTAATAAT GATATCAACTCCAAAAATATGACCATGTAGTTCTATTCAGATTTCAATTTCTATGTTTATTTTTCAAATTTCCTTAACAT GAAAAAAAATGTCTACCTCATTAGAGAAGCTAGCTATTGAACAAGTGGATGTATTCATGACATAAATTTAAGGCACTTCC TATTTCATGTCTTTCTTTTTG
CDS sequence (LotjaGi1g1v0171700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAACACTTTCGTATGGTCGTTGCTGTTATTGGGAATGTTGCCTCAGTGTCCCTCTATGCTGCACCAACGGTTAC CTTCAAGAGAGTGATTAGGAAAAAAAGCACAGAGGAATTTTCATGCATTCCATACATCATAGGACTATTGAACTGTCTCC TTTTCACTTGGTATGGATTGCCTGTTGTAAGCAACAAGTGGGAAAATTTCCCTCTGGTTACAGTTAATGGAGTTGGGATT GTTTTTGAACTATCCTATGTCCTCATTTATTTCTGGTATTCTTCAGCAAAACAAAAGGTGAAGGTAGCAACTACAGCAAT ACCAGTCATTCTAGTGTTCTGCGCCATTGCTTTGGTATCGGCTTTTAACTTCCCTGATCATCGTCACCGGAAGCTACTAG TTGGTAGTGTGGGCTTGGGGGTTGCAGTAGCAATGTATGCATCCCCTTTGGTTGCAATGAAAAAAGTGATACAAACCAAG AGCGTGGAATTCATGCCACTCCCTTTATCTTTGTGTTCATTCTTAGCTAGTGTGTTGTGGCTCACATATGGACTTCTCAT TCAGGATATATTCGTTGCGGGACCAAGTTTAGTTGGAACTCCCTTGAGCATCCTGCAGCTGGTTCTCCACTGCAAATACT GGAAAAGGAGAGAAATGAAAGAACCAATTAACAACAAGGTGGAGCTGCACAAAGAGAACATGGAGAAATTGGACTTGGAA AAAGGGGGATTATTTGAAACGAAGGACATTGAAGAAAAGAATGTGACAATTCTTAATAATGATATCAACTCCAAAAATAT GACCATGTAG
Protein sequence (LotjaGi1g1v0171700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEHFRMVVAVIGNVASVSLYAAPTVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSNKWENFPLVTVNGVGI VFELSYVLIYFWYSSAKQKVKVATTAIPVILVFCAIALVSAFNFPDHRHRKLLVGSVGLGVAVAMYASPLVAMKKVIQTK SVEFMPLPLSLCSFLASVLWLTYGLLIQDIFVAGPSLVGTPLSILQLVLHCKYWKRREMKEPINNKVELHKENMEKLDLE KGGLFETKDIEEKNVTILNNDINSKNMTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 251 | 251 | 5.6E-146 | – | |
| PANTHER | 1 | 251 | 251 | 5.6E-146 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 8 | 97 | 90 | 6.5E-18 | ||
| Gene3D | 10 | 107 | 98 | 4.6E-13 | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 72 | 93 | 22 | - | – | |
| Phobius | 72 | 93 | 22 | - | – | |
| Phobius | 94 | 99 | 6 | - | – | |
| Phobius | 100 | 120 | 21 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 132 | 151 | 20 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Pfam | 133 | 217 | 85 | 1.1E-22 | ||
| Gene3D | 134 | 223 | 90 | 3.6E-14 | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 164 | 184 | 21 | - | – | |
| Phobius | 185 | 189 | 5 | - | – | |
| TMHMM | 190 | 209 | 20 | - | – | |
| Phobius | 190 | 209 | 20 | - | – | |
| Phobius | 210 | 269 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0171700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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