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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0174600 |
| Transcript ID | LotjaGi1g1v0174600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium binding protein-like; TAIR: AT4G27790.1 Calcium-binding EF hand family protein; Swiss-Prot: sp|J3S9D9|RCN2V_CROAD Reticulocalbin-2; TrEMBL-Plants: tr|A0A151TYK7|A0A151TYK7_CAJCA 45 kDa calcium-binding protein; Found in the gene: LotjaGi1g1v0174600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:33485891..33489253) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGCATTCTCTCCCAATATGTCTCTCTCCCTGTATACCTCCTATTTCTCAACCTCAAAAACAAACTAAGCCGCCTGA AAATGACAAAGGCGGTGGTGGTAATTTATATCCTAGTAGCCACCGCCACATTGTTCATGATCGCCATCCTATCTCCGCCG GTGAACTTTAATAAAGAGGGAGATAAAGACCGCCTTAACCGCCGGTTCGGATACAAAATCATACTCGAACGCGCGCCAAA ATTTGACCCTCTTTTGACAAACATTGATAGAAAGGAAGCACAAAATATTAATATCAATAATGCTGTTGTTCCTAGGCGTT TGGACAGCACCACCTCAGCGAGTGAGGTTGCGGAGACTTACCAATATCTAATCTCTGGCGGCACGTTAAACACGACATTG AGGTTGATCATTTTGTTCCCATTGTTGGATAGAGATCCCAAAGATGGTGTGGTTGTTTTCAATGAGTTAGAGGCTTGGAT TACCCAAAGAGCTGTGGAGAGATTGGATTTATTAACCCAGGCTGAGTTTGATTCCAAGGACAAGAATGGGGATTCTGCTA TCTCTTTTCAAGAGTATCTGCCTCAGTTTTCTCAACATGATATAGGTCATTACATTAATTTGTTAATTTATTTCATTGGT TCTGTTAGAGATAGTTATATATTCAACAGTTTAAGTTGTTGGGATGATTAGTTATTTAACACGGTATCAGGGCCTTAATG ACCGAACGGTTTAGAGTTCAATTATTACCGCCTCCAATTCTTTGAAGCATATGGATGGAGGGTTTGTGCATTCTCCATGC TTCAAGCTCAAAGGACAAAGGACTCTTACGTGAGAGCGCGTGTTAGAAATAATAATATAAAATTATTCATGTGTCTCTCA TCCAACAGCTTAAACTTTTCACATAATTAGTTATTTTAAGTATTCTTTTCTTTTTCAACTTTGTTGTTCCACTTATAAGA TGTTTGACATAATGCCAGAGAGAAAAGAAATGGGGCATGGTGAAGCAGGATGGTGGATGCAAAAATTTGAAATTGCGGAC ATTGATTTCAATGGACTGCTTAACTTCACCGAGCTTAGAGAGTAAATTACTAACTTATAACTTATAAGAAAATCTTGTTT GAATTATTTTTATTTTATTTTATTACATGCTAGCTAGCTGCAATAATGCAATTGATCACAACAGACTCCACTGATCTTCT TCCAGTTTTTTGCACCCAGAAGACAGCAAAAATCAACAAATGCTGAAATGGATGATCACTGATAGAGTTAAGTAAGTTTC TTCAATTATAAATTAGTGTTTTATCTGAATATTGCTTTGTTAACAATTTTTTTACTTACATTTGAGATAAACAAGATAGA GAAGATGTGATATGTAATGTCACACAAAAATGTAGAGAGGGATAGGTAGAAAAATGAATGAAAATGAGATGGAATAAAAA GTGAAGTGTGAATGAATCATTACTCATTTTATCTACAACTTTTAAAGAAATGTCAATTTTCACCGCTTACGTTTGTCCAT TCCGTATATGAAAATGATTAGCGGGATGTATTTTTTGTGGCAACTTGGACACTTTTTGGACATACGCTTTTGTGACGGTT TTTAACAATTATGACATGTTGTGGGAATTATAAACCGTGTCATGCATATATTTATTGGGAAGTCTCACATTGACTAGAGC TACGCCCAATTAATAAGCCTTTATATGGTAATACAATGTTCAACTCTTAAGCTAGTTTTTTTGTCGAGTTATGTCTCCCA AATTCTAATATGACATTAGAAACTATATATCCAAGATCTGTTAAGTGGAGACCACATGTATATGGGTCACCTATAAACAG TGACGGATCCAGAAATTTATTACGTGGGGGCAATATATACACATAAATTTATAAAAAAAAAAAATATACATATTACTATT AGAAACTTGAAAATATATCATAATATGGGGGCATTTTCTATCATGTGTGTGCATTTTCTAGTGTATGGGGTAACATAACA TTTAGTATTTTAGTATGATTAATATGTTTTTGATAAATTATATGGGGGCAAATGCCCCATTTTGCTTAATTTGGATTCGT GCCTGCCTATAAACATATATGTGAGTGCTGAGGAGTCTCATATTAACTACTGATATTTTAATATTAATTGAATTTTTTAT ATTGAAAGTCAATTATTAACTTTTGAGTTAGTTTTTGCCTTGAGTTACACCCCAAATTTTAATACATACTCCCTCCGGTC CTATTTATAAGCAGCAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATATGTCTTG AATCAAAATAAACTTCCAAAATTACCCTTTATTATTAGTGTTGGAAAGTGGGAAAAAGAAAGAATAATTAATGAGACACA TTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAA AAATGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATATATGTCTATGTATAATCACTACT GCATATAAGTATAAGCTTTTTTGTGATACAGGCTTATGCACCCTGAAAATGATGGGAAATTGAATTTCGATGAATTTAAA GACCATGTTTATAACACCTATTCAAGTTATATGGACTTTGAAACTAGCGGAGGGAACATACCTGATCCAGAGGATAAATT TGCTCAGCTAGATGTGAACAAGGACCAGTAAGTACTTTTTCTTTTCAGCCTCATAAATAAGTAATCACAAGTTTTGAATT GAATTAATCTTTTTCATTTGATATGTAATGTTTTGCCTTGCTAACATTTTACCATTATTATTTTTATTATATATTTTGCA GATTCTTGACACCAGAAGAATTGATACCTATAGTTCCTTACCTCTACCCCGGAGAGCTGGCTTATGCTAAATATTTCACA TACTATTTAATTAGTGAGGTAAGTCACTTTTCTTTGAATTTTAAGGGTTGTGCTGCGTGATTGGGATACTAATGTTACAA TTAAGGAAAATTAATGTAGTTTGAGTATGTGAAGTGATAATTAACTGGCTCTGTTCGATGCTGCAGGCTGATGAGAATGG AGATAAAAAGTTGTCACTCGAGGAAATGTTGAATCATGAATTTATTTTCTACAACACAGTTCATGCGGATGATGATCCGG AAGGCGAAGAAGATCATGACGAACTTTGACATATGAAGAGGCCATAAATGAAGTAGCTAGTGACATGGTGCTTCCTGATA TCGGTTTTGTAATATATATAGCAATCCTCTTTGTAAAATATATGTAACACAAAAAATTCCAATGCAAATAATTTCATTAT TTT
CDS sequence (LotjaGi1g1v0174600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAGGCGGTGGTGGTAATTTATATCCTAGTAGCCACCGCCACATTGTTCATGATCGCCATCCTATCTCCGCCGGT GAACTTTAATAAAGAGGGAGATAAAGACCGCCTTAACCGCCGGTTCGGATACAAAATCATACTCGAACGCGCGCCAAAAT TTGACCCTCTTTTGACAAACATTGATAGAAAGGAAGCACAAAATATTAATATCAATAATGCTGTTGTTCCTAGGCGTTTG GACAGCACCACCTCAGCGAGTGAGGTTGCGGAGACTTACCAATATCTAATCTCTGGCGGCACGTTAAACACGACATTGAG GTTGATCATTTTGTTCCCATTGTTGGATAGAGATCCCAAAGATGGTGTGGTTGTTTTCAATGAGTTAGAGGCTTGGATTA CCCAAAGAGCTGTGGAGAGATTGGATTTATTAACCCAGGCTGAGTTTGATTCCAAGGACAAGAATGGGGATTCTGCTATC TCTTTTCAAGAGTATCTGCCTCAGTTTTCTCAACATGATATAGAGAGAAAAGAAATGGGGCATGGTGAAGCAGGATGGTG GATGCAAAAATTTGAAATTGCGGACATTGATTTCAATGGACTGCTTAACTTCACCGAGCTTAGAGATTTTTTGCACCCAG AAGACAGCAAAAATCAACAAATGCTGAAATGGATGATCACTGATAGAGTTAAGCTTATGCACCCTGAAAATGATGGGAAA TTGAATTTCGATGAATTTAAAGACCATGTTTATAACACCTATTCAAGTTATATGGACTTTGAAACTAGCGGAGGGAACAT ACCTGATCCAGAGGATAAATTTGCTCAGCTAGATGTGAACAAGGACCAATTCTTGACACCAGAAGAATTGATACCTATAG TTCCTTACCTCTACCCCGGAGAGCTGGCTTATGCTAAATATTTCACATACTATTTAATTAGTGAGGCTGATGAGAATGGA GATAAAAAGTTGTCACTCGAGGAAATGTTGAATCATGAATTTATTTTCTACAACACAGTTCATGCGGATGATGATCCGGA AGGCGAAGAAGATCATGACGAACTTTGA
Protein sequence (LotjaGi1g1v0174600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKAVVVIYILVATATLFMIAILSPPVNFNKEGDKDRLNRRFGYKIILERAPKFDPLLTNIDRKEAQNININNAVVPRRL DSTTSASEVAETYQYLISGGTLNTTLRLIILFPLLDRDPKDGVVVFNELEAWITQRAVERLDLLTQAEFDSKDKNGDSAI SFQEYLPQFSQHDIERKEMGHGEAGWWMQKFEIADIDFNGLLNFTELRDFLHPEDSKNQQMLKWMITDRVKLMHPENDGK LNFDEFKDHVYNTYSSYMDFETSGGNIPDPEDKFAQLDVNKDQFLTPEELIPIVPYLYPGELAYAKYFTYYLISEADENG DKKLSLEEMLNHEFIFYNTVHADDDPEGEEDHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 3.8E-136 | – | |
| PANTHER | 1 | 355 | 355 | 3.8E-136 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 355 | 328 | - | – | |
| Gene3D | 80 | 258 | 179 | 5.2E-15 | – | |
| SUPERFAMILY | 106 | 251 | 146 | 2.43E-18 | ||
| ProSiteProfiles | 149 | 175 | 27 | 6.898 | ||
| ProSiteProfiles | 182 | 217 | 36 | 8.321 | ||
| SUPERFAMILY | 231 | 332 | 102 | 1.07E-10 | ||
| ProSiteProfiles | 237 | 256 | 20 | 6.898 | ||
| Gene3D | 261 | 334 | 74 | 2.4E-10 | – | |
| ProSiteProfiles | 265 | 300 | 36 | 8.6 | ||
| ProSitePatterns | 278 | 290 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0174600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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