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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0179900 |
Transcript ID | LotjaGi1g1v0179900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT5G62940.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6; TrEMBL-Plants: tr|A0A0S3RFR0|A0A0S3RFR0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0179900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34660059..34662944) extracted from Lotus japonicus Gifu genome v1.2.
AATAATCCAAATGGTGACTGTGTGTGTGGGGACTGAGATCGAAGAAGTAGAGTGCTCTTTCGGTATGCGCGCGTTCTTTA TCGGGGACCCAAATATTCTCTCTCTCTCACCACCTAGCTTCTGTCACGTCAGATATCACCACTACAATCATCAACGGCTC CCATTTCTTCCAACTCAACAACACCAAATCACAGCCGTCCATTTTTTTGTCACTGAAGATTTGGTCAAGCTGAGATAAGC CATGGCATTAGTGAGACAGCATGAGGCCCACCATTGCTGTCACCGACGGGGTTTGTAGCATAGGGACAACATGGCATGGC AATCTCTCTCTCTTCTCTCTCTCACTAGTGAGTAGAGAGTTACCTTTTTCTTCCTTCTTATTCACTGTCCCGTCCCATGT AGCAACCACTCACACAAACACATGTCCACTACTCTTCTCATTCATTCCCAACTTCTCCTCTCACTTAACACCTCATTTTA TCACATTCTTCTAACACTTCCTCTTCTTTCTCCCTGCAAATGCATTTCACAAACTGTAAGTAGTTAGTGGCACTTTAGTT TATCAAACTACATTGATTGCTTGATCAGAATTGAAGAAAACAAGTTCTAGCTATAGGTTCATTGCTGAGCTTTGCTTTTG AATGGGTTTGTCTTCTCTTCACGTTTGCATGGACACAGCAGAGCATTGGTTACAGGTATATATACCATGCACATCAAACT GTACTCTATTATTTGCCTCTAATTTTCTTTCTCATGCTTGTATGGAGAGTATGGTGTTCATGAGAGGCAAAATGTTTGGA TACATGGTGATAATTACAGTGAGGTTAAAATGGTGATGGACCATCACAAAAATTAATGAAAATTGGTTCTGTCCATACCG ATTTTAACTTCAATGTGTATCTAAACTTATATGCACTAATTCTTAATTCTTCTCATTTCTCACACTGTTGAACATTAATC AGTTTAGTACTATAGAAGTTTGGTAATAGAGTTTTTGCTTAAGGTTTTTCAATATATATATGGATATACTTACATTGCAA ATTGCAATTTAATTAGTTCAATGGCTATAGATATATATTTGCACTCGGCAAACAGCTCTCTTGATTTTAGCATGCTGAAT CTAAGCAAAAAAGGAAAAGTAAGAGAAGGCCTAGGAAAAGAAAATTAGGAGAGGAGCTAGAAAGAGAACAAAAAGAATGA AAAAGAAAACGACATGTATAATCCAACAAGACAAATTTTACAGCCCCTAACACATTTTCCTTTAATCATATGTACATTTT CATGACTGCTTTTGTTTCTTTTATTCAAAATGACAGGGCACAATTCACGATGAGTCTGGAATGGATTCTTCCTCACCTTC GGGTGACATGCTTACATGCTCAAGGCCCATGATGGAGAGGAGGCTGAGACCCCCACTTGACCAAGCTCTCAAGTGCCCAA GGTGTGACTCTGCCCACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCCAGGTACTTCTGCAAGACTTGC AGAAGGTATTGGACCAAGGGAGGAACTCTCAGAAACATCCCCGTCGGCGGAGGATGCAGAAAGAACAAGAAAGTTTCAAA CAAGAAATCCAATGACCCTCATTTGTCTAACAATAATCAAAACCAATCCCAACCAGGAGTACCCTCCTACCATCATCACA ACCCTAAAGATCTTCAACTCTCTTTCCCAGCTGATGTGCAATTTTCCCACCTGAGTAACTTGCTTGGGGCTAATGCTGGA GCATTAGGAAACCCTAATTTCATGGAGAGCAAGTATGGAAACATTGGCATGCTTGATAACCCTAGGCCTATTGATTTCAT GGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTGGTTCTAGGAATTTTGATTTTTTTGGAAATAGTCATCATGATATGG GCATGGCTGTTGGGCTGGGAGATCATCATATGAGTGGTACTCAAAATGGGATGCCACCAAATTTTCATGGTCTTTGCTCT CCTTCATTTGGTGGCATGTCCTTTGATGGGGTTGGCAGCCACAATAACAACAATGGAGCTTACTTAATGGACTCTTGCCA GAGGCTTATGCTGCCCTATGATCATGCCAATGATCAGGATCATAATGAGGCTTCAATTGATGTGAAGCCAAACCCTAGAC TATTATCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAATCATATGGGTATCTCAACGGTCCAGGATCA TGGACTGGTGGCATGATGAACGGCTATGGATCCTCCACAAACCCTTTGATCTAAAAGGCAAACCTCTCAGCTTGGTTAAT TTGATCAATTAATCAACCTAATCAATTCACCATCTAATTATATAATATAATTATATTATATATACATAAAAGCCTTTTTA TGTGAGGGTTCCTTGTAGTTTCCTATGTAGTCCTTGTGGTCCTAGTACTATTACTTAACCAAGAGAGTGTGAATGAGAAG CTTCAGAGTCCAAATCTACTGCCTTGGTGCTTTACCTTTTTGGTTTTTTTATATGCTGTGTCTTGGTGTGCGACACGTCA TGAAAGCTTTAGGATTTATGTATGATCGACAATGTATGATGATGTAACATCGAGGAAGATATGGTAGTTTCTTTTTCCAG TTAAAGAAAATATGCAGTAGTACTATATTATCTTTATAGTGGAACACTTTGTCTCTATGCTTGTGGGGCTATTATTTGTG TCCTTAATTCAATAGAGTTCTTCTCACCTCCGTCAGCTTTCCCCTCATTAGACAATTTAAGTAATTTTTCTCAAGGGACC AGATGTTTACATAGAGTGGATGTTCAGTTATTGAGAGACCGGATTCAGAACACCGAATATATTCTATAATGACATATTCA CATCCA
CDS sequence (LotjaGi1g1v0179900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTGTCTTCTCTTCACGTTTGCATGGACACAGCAGAGCATTGGTTACAGGGCACAATTCACGATGAGTCTGGAAT GGATTCTTCCTCACCTTCGGGTGACATGCTTACATGCTCAAGGCCCATGATGGAGAGGAGGCTGAGACCCCCACTTGACC AAGCTCTCAAGTGCCCAAGGTGTGACTCTGCCCACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCCAGG TACTTCTGCAAGACTTGCAGAAGGTATTGGACCAAGGGAGGAACTCTCAGAAACATCCCCGTCGGCGGAGGATGCAGAAA GAACAAGAAAGTTTCAAACAAGAAATCCAATGACCCTCATTTGTCTAACAATAATCAAAACCAATCCCAACCAGGAGTAC CCTCCTACCATCATCACAACCCTAAAGATCTTCAACTCTCTTTCCCAGCTGATGTGCAATTTTCCCACCTGAGTAACTTG CTTGGGGCTAATGCTGGAGCATTAGGAAACCCTAATTTCATGGAGAGCAAGTATGGAAACATTGGCATGCTTGATAACCC TAGGCCTATTGATTTCATGGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTGGTTCTAGGAATTTTGATTTTTTTGGAA ATAGTCATCATGATATGGGCATGGCTGTTGGGCTGGGAGATCATCATATGAGTGGTACTCAAAATGGGATGCCACCAAAT TTTCATGGTCTTTGCTCTCCTTCATTTGGTGGCATGTCCTTTGATGGGGTTGGCAGCCACAATAACAACAATGGAGCTTA CTTAATGGACTCTTGCCAGAGGCTTATGCTGCCCTATGATCATGCCAATGATCAGGATCATAATGAGGCTTCAATTGATG TGAAGCCAAACCCTAGACTATTATCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAATCATATGGGTAT CTCAACGGTCCAGGATCATGGACTGGTGGCATGATGAACGGCTATGGATCCTCCACAAACCCTTTGATCTAA
Protein sequence (LotjaGi1g1v0179900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSSLHVCMDTAEHWLQGTIHDESGMDSSSPSGDMLTCSRPMMERRLRPPLDQALKCPRCDSAHTKFCYYNNYSLSQPR YFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDPHLSNNNQNQSQPGVPSYHHHNPKDLQLSFPADVQFSHLSNL LGANAGALGNPNFMESKYGNIGMLDNPRPIDFMESKLEGIIGSSGSRNFDFFGNSHHDMGMAVGLGDHHMSGTQNGMPPN FHGLCSPSFGGMSFDGVGSHNNNNGAYLMDSCQRLMLPYDHANDQDHNEASIDVKPNPRLLSLEWQDQGCSDAGKESYGY LNGPGSWTGGMMNGYGSSTNPLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 18 | 334 | 317 | 4.3E-82 | – | |
PANTHER | 18 | 334 | 317 | 4.3E-82 | – | |
Pfam | 53 | 110 | 58 | 2.0E-33 | ||
ProSiteProfiles | 56 | 110 | 55 | 29.078 | ||
ProSitePatterns | 58 | 94 | 37 | - | ||
MobiDBLite | 101 | 142 | 42 | - | – | |
MobiDBLite | 117 | 135 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0179900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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