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Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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We have found 57 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.023s to perform.

Transcript	Name	Description	Chr	Start	End	Strand	Domain predictions	GO predictions
Lj0g3v0106459.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF3.5-like [Glycine max] gi\|356498677\|ref\|XP_003518176.1\|	chr0	45786187	45786959	+	1 domain prediction PTHR31992	–
Lj0g3v0233949.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF1.7-like [Glycine max] gi\|356522204\|ref\|XP_003529737.1\|	chr0	121128582	121130627	+	1 domain prediction PTHR31992	–
Lj0g3v0246749.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof-type zinc finger DNA-binding family protein [Theobroma cacao] gi\|508699996\|gb\|EOX91892.1\|	chr0	127888260	127890029	+	1 domain prediction PTHR31992	–
Lj0g3v0252679.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	f-box family protein [Populus trichocarpa] gi\|224081545\|ref\|XP_002306453.1\|	chr0	131091225	131091777	+	1 domain prediction PTHR31992	–
Lj0g3v0281969.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof zinc finger protein [Medicago truncatula] gi\|357469373\|ref\|XP_003604971.1\|	chr0	146200240	146200863	-	1 domain prediction PTHR31992	–
Lj0g3v0281979.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof zinc finger protein [Medicago truncatula] gi\|357469373\|ref\|XP_003604971.1\|	chr0	146201068	146202011	-	1 domain prediction PTHR31992	–
Lj0g3v0291209.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof zinc finger protein [Medicago truncatula] gi\|357469373\|ref\|XP_003604971.1\|	chr0	151182810	151184560	-	1 domain prediction PTHR31992	–
Lj0g3v0331729.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi\|356541242\|ref\|XP_003539088.1\|	chr0	173576439	173577385	+	1 domain prediction PTHR31992	–
Lj0g3v0335699.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF5.3-like [Glycine max] gi\|356555121\|ref\|XP_003545886.1\|	chr0	175874773	175876768	-	1 domain prediction PTHR31992	–
Lj0g3v0363619.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof21 [Glycine max] gi\|351723723\|ref\|NP_001236777.1\|	chr0	191841168	191843558	+	1 domain prediction PTHR31992	–
Lj0g3v0363619.2 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof21 [Glycine max] gi\|351723723\|ref\|NP_001236777.1\|	chr0	191841373	191843558	+	1 domain prediction PTHR31992	–
Lj1g3v0409040.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF5.6 [Glycine max] gi\|356508677\|ref\|XP_003523081.1\|	chr1	4607237	4609663	-	1 domain prediction PTHR31992	–
Lj1g3v0579530.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF5.4-like [Vitis vinifera] gi\|225455716\|ref\|XP_002267092.1\|	chr1	7134903	7135252	-	1 domain prediction PTHR31992	–
Lj1g3v3220250.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi\|356502430\|ref\|XP_003520022.1\|	chr1	36589579	36591623	-	1 domain prediction PTHR31992	–
Lj1g3v5037140.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF3.7-like [Glycine max] gi\|356560258\|ref\|XP_003548410.1\|	chr1	61662931	61664282	+	1 domain prediction PTHR31992	–
Lj2g3v1457600.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF5.7-like [Glycine max] gi\|356496842\|ref\|XP_003517274.1\|	chr2	23097229	23097885	-	1 domain prediction PTHR31992	–
Lj3g3v0290550.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF1.7-like [Glycine max] gi\|356556684\|ref\|XP_003546653.1\|	chr3	2106368	2108734	-	1 domain prediction PTHR31992	–
Lj3g3v2310050.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max] gi\|356542565\|ref\|XP_003539737.1\|	chr3	28162474	28164476	-	1 domain prediction PTHR31992	–
Lj3g3v2477690.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof17 [Glycine max] gi\|351722092\|ref\|NP_001236720.1\|	chr3	30455153	30456790	+	1 domain prediction PTHR31992	–
Lj3g3v3189700.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi\|356542453\|ref\|XP_003539681.1\|	chr3	39439037	39441564	+	1 domain prediction PTHR31992	–
Lj4g3v0190020.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	dof21 protein [Sorghum bicolor] gi\|496205487\|gb\|AGL40024.1\|	chr4	2437046	2438307	+	1 domain prediction PTHR31992	–
Lj4g3v0450470.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Dof6 transcription factor [Glycine max] gi\|351726449\|ref\|NP_001236615.1\|	chr4	6323623	6324905	-	1 domain prediction PTHR31992	–
Lj4g3v0462790.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF1.4-like [Cicer arietinum] gi\|502142702\|ref\|XP_004505077.1\|	chr4	6970298	6972424	-	1 domain prediction PTHR31992	–
Lj4g3v0462790.2 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF1.4-like [Cicer arietinum] gi\|502142702\|ref\|XP_004505077.1\|	chr4	6970298	6972424	-	1 domain prediction PTHR31992	–
Lj4g3v1736210.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF5.4-like [Glycine max] gi\|356511564\|ref\|XP_003524495.1\|	chr4	24962748	24965189	-	1 domain prediction PTHR31992	–
Lj5g3v1236780.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	transcription factor C2C2-Dof [Lotus japonicus] gi\|193237589\|dbj\|BAG50071.1\|	chr5	20006798	20010778	+	1 domain prediction PTHR31992	–
Lj6g3v2017500.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: dof zinc finger protein DOF2.2-like [Cicer arietinum] gi\|502077975\|ref\|XP_004485800.1\|	chr6	23809061	23810958	-	1 domain prediction PTHR31992	–
LotjaGi1g1v0179900.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT5G62940.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9FM03\|DOF56_ARATH Dof zinc finger protein DOF5.6; TrEMBL-Plants: tr\|A0A0S3RFR0\|A0A0S3RFR0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0179900	LjG1.1_chr1	34660059	34662944	-	1 domain prediction PTHR31992	–
LotjaGi1g1v0209300.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT5G60850.1 OBF binding protein 4; Swiss-Prot: sp\|Q8LDR0\|DOF54_ARATH Dof zinc finger protein DOF5.4; TrEMBL-Plants: tr\|V7CE95\|V7CE95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0209300	LjG1.1_chr1	45895193	45896652	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0276000.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G52440.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9SVC5\|DOF35_ARATH Dof zinc finger protein DOF3.5; TrEMBL-Plants: tr\|G7J664\|G7J664_MEDTR Dof domain zinc finger protein; Found in the gene: LotjaGi1g1v0276000	LjG1.1_chr1	67480220	67484825	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0290200.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|A0A0S3REK8\|A0A0S3REK8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200	LjG1.1_chr1	70541033	70543692	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0290200.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|A0A1J7H8V2\|A0A1J7H8V2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200	LjG1.1_chr1	70541040	70543396	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0290200.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|A0A1J7H8V2\|A0A1J7H8V2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200	LjG1.1_chr1	70541092	70542895	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0293200.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9ZPY0\|DOF25_ARATH Dof zinc finger protein DOF2.5; TrEMBL-Plants: tr\|I3SV35\|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0293200	LjG1.1_chr1	71137795	71139894	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0539000.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr\|A0A0K8K634\|A0A0K8K634_CAJCA Dof protein; Found in the gene: LotjaGi1g1v0539000	LjG1.1_chr1	106754023	106756318	-	1 domain prediction PTHR31992	–
LotjaGi1g1v0794400.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|I3SV35\|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0794400	LjG1.1_chr1	136562256	136564405	+	1 domain prediction PTHR31992	–
LotjaGi1g1v0794400.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|I3SV35\|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0794400	LjG1.1_chr1	136562302	136564549	+	1 domain prediction PTHR31992	–
LotjaGi2g1v0329300.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT5G65590.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9LSL6\|DOF57_ARATH Dof zinc finger protein DOF5.7; TrEMBL-Plants: tr\|V7CM55\|V7CM55_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0329300	LjG1.1_chr2	80478050	80479795	-	1 domain prediction PTHR31992	–
LotjaGi2g1v0364300.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT2G28510.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q8LE43\|DOF21_ARATH Dof zinc finger protein DOF2.1; TrEMBL-Plants: tr\|A0A0K8K635\|A0A0K8K635_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0364300	LjG1.1_chr2	86177898	86180368	-	1 domain prediction PTHR31992	–
LotjaGi2g1v0372300.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr\|K7LTC4\|K7LTC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0372300	LjG1.1_chr2	86920932	86923239	+	1 domain prediction PTHR31992	–
LotjaGi3g1v0023500.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT1G51700.1 DOF zinc finger protein 1; Swiss-Prot: sp\|O82155\|DOF17_ARATH Dof zinc finger protein DOF1.7; TrEMBL-Plants: tr\|A0A0L9UP51\|A0A0L9UP51_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023500	LjG1.1_chr3	2596114	2598544	-	1 domain prediction PTHR31992	–
LotjaGi3g1v0231700.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G55370.2 OBF-binding protein 3; Swiss-Prot: sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr\|V7AL92\|V7AL92_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0231700	LjG1.1_chr3	36352805	36354655	+	1 domain prediction PTHR31992	–
LotjaGi3g1v0231700.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G55370.2 OBF-binding protein 3; Swiss-Prot: sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr\|A0A0L9VTD2\|A0A0L9VTD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231700	LjG1.1_chr3	36353268	36354655	+	1 domain prediction PTHR31992	–
LotjaGi3g1v0231800.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT2G37590.1 DNA binding with one finger 2.4; Swiss-Prot: sp\|O80928\|DOF24_ARATH Dof zinc finger protein DOF2.4; TrEMBL-Plants: tr\|V7AL92\|V7AL92_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0231800	LjG1.1_chr3	36395460	36397487	+	1 domain prediction PTHR31992	–
LotjaGi3g1v0282500.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr\|A0A0B2RMR4\|A0A0B2RMR4_GLYSO Dof zinc finger protein DOF3.6; Found in the gene: LotjaGi3g1v0282500	LjG1.1_chr3	56676126	56677741	+	1 domain prediction PTHR31992	–
LotjaGi3g1v0291800.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT1G28310.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9FZA4\|DOF14_ARATH Dof zinc finger protein DOF1.4; TrEMBL-Plants: tr\|I1MEF1\|I1MEF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291800	LjG1.1_chr3	59405959	59407975	-	1 domain prediction PTHR31992	–
LotjaGi3g1v0398500.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr\|I3SV35\|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0398500	LjG1.1_chr3	80045511	80048908	+	1 domain prediction PTHR31992	–
LotjaGi4g1v0053100.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT1G28310.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9FZA4\|DOF14_ARATH Dof zinc finger protein DOF1.4; TrEMBL-Plants: tr\|V7CQU0\|V7CQU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0053100	LjG1.1_chr4	6431520	6433410	-	1 domain prediction PTHR31992	–
LotjaGi4g1v0053100.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT1G28310.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9FZA4\|DOF14_ARATH Dof zinc finger protein DOF1.4; TrEMBL-Plants: tr\|V7CQU0\|V7CQU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0053100	LjG1.1_chr4	6431589	6433514	-	1 domain prediction PTHR31992	–
LotjaGi4g1v0058100.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Dof zinc finger protein; TAIR: AT1G28310.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp\|Q9FZA4\|DOF14_ARATH Dof zinc finger protein DOF1.4; TrEMBL-Plants: tr\|A0A1J7IC40\|A0A1J7IC40_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0058100	LjG1.1_chr4	6995164	6997624	-	1 domain prediction PTHR31992	–