Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003851
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 72 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.805s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0106459.1
n.a. PREDICTED: dof zinc finger protein DOF3.5-like [Glycine max] gi|356498677|ref|XP_003518176.1| chr0 45786187 45786959 +
5 domain predictions
2 GO terms
Lj0g3v0233949.1
n.a. PREDICTED: dof zinc finger protein DOF1.7-like [Glycine max] gi|356522204|ref|XP_003529737.1| chr0 121128582 121130627 +
5 domain predictions
2 GO terms
Lj0g3v0246749.1
n.a. Dof-type zinc finger DNA-binding family protein [Theobroma cacao] gi|508699996|gb|EOX91892.1| chr0 127888260 127890029 +
5 domain predictions
2 GO terms
Lj0g3v0252679.1
n.a. f-box family protein [Populus trichocarpa] gi|224081545|ref|XP_002306453.1| chr0 131091225 131091777 +
4 domain predictions
2 GO terms
Lj0g3v0281979.1
n.a. Dof zinc finger protein [Medicago truncatula] gi|357469373|ref|XP_003604971.1| chr0 146201068 146202011 -
2 domain predictions
2 GO terms
Lj0g3v0291209.1
n.a. Dof zinc finger protein [Medicago truncatula] gi|357469373|ref|XP_003604971.1| chr0 151182810 151184560 -
5 domain predictions
2 GO terms
Lj0g3v0292619.1
n.a. PREDICTED: cyclic dof factor 4-like [Cicer arietinum] gi|502078275|ref|XP_004485893.1| chr0 151886610 151888478 -
5 domain predictions
2 GO terms
Lj0g3v0331729.1
n.a. PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi|356541242|ref|XP_003539088.1| chr0 173576439 173577385 +
5 domain predictions
2 GO terms
Lj0g3v0335699.1
n.a. PREDICTED: dof zinc finger protein DOF5.3-like [Glycine max] gi|356555121|ref|XP_003545886.1| chr0 175874773 175876768 -
5 domain predictions
2 GO terms
Lj0g3v0363619.1
n.a. Dof21 [Glycine max] gi|351723723|ref|NP_001236777.1| chr0 191841168 191843558 +
5 domain predictions
2 GO terms
Lj0g3v0363619.2
n.a. Dof21 [Glycine max] gi|351723723|ref|NP_001236777.1| chr0 191841373 191843558 +
5 domain predictions
2 GO terms
Lj1g3v0409040.1
n.a. PREDICTED: dof zinc finger protein DOF5.6 [Glycine max] gi|356508677|ref|XP_003523081.1| chr1 4607237 4609663 -
5 domain predictions
2 GO terms
Lj1g3v0513130.1
n.a. PREDICTED: dof zinc finger protein DOF3.3-like [Glycine max] gi|356516810|ref|XP_003527086.1| chr1 6529434 6532427 +
5 domain predictions
2 GO terms
Lj1g3v0579530.1
n.a. PREDICTED: dof zinc finger protein DOF5.4-like [Vitis vinifera] gi|225455716|ref|XP_002267092.1| chr1 7134903 7135252 -
5 domain predictions
2 GO terms
Lj1g3v2975990.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356567050|ref|XP_003551736.1| chr1 33748324 33752063 +
5 domain predictions
2 GO terms
Lj1g3v3220250.1
n.a. PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi|356502430|ref|XP_003520022.1| chr1 36589579 36591623 -
5 domain predictions
2 GO terms
Lj1g3v3991510.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356571789|ref|XP_003554055.1| chr1 47392757 47395467 +
5 domain predictions
2 GO terms
Lj2g3v1277700.1
n.a. PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max] gi|356502549|ref|XP_003520081.1| chr2 20416666 20419816 -
5 domain predictions
2 GO terms
Lj3g3v0290550.1
n.a. PREDICTED: dof zinc finger protein DOF1.7-like [Glycine max] gi|356556684|ref|XP_003546653.1| chr3 2106368 2108734 -
5 domain predictions
2 GO terms
Lj3g3v2310050.1
n.a. PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max] gi|356542565|ref|XP_003539737.1| chr3 28162474 28164476 -
5 domain predictions
2 GO terms
Lj3g3v2477690.1
n.a. Dof17 [Glycine max] gi|351722092|ref|NP_001236720.1| chr3 30455153 30456790 +
5 domain predictions
2 GO terms
Lj3g3v3189700.1
n.a. PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max] gi|356542453|ref|XP_003539681.1| chr3 39439037 39441564 +
5 domain predictions
2 GO terms
Lj4g3v0190020.1
n.a. dof21 protein [Sorghum bicolor] gi|496205487|gb|AGL40024.1| chr4 2437046 2438307 +
5 domain predictions
2 GO terms
Lj4g3v0450470.1
n.a. Dof6 transcription factor [Glycine max] gi|351726449|ref|NP_001236615.1| chr4 6323623 6324905 -
5 domain predictions
2 GO terms
Lj4g3v0462790.1
n.a. PREDICTED: dof zinc finger protein DOF1.4-like [Cicer arietinum] gi|502142702|ref|XP_004505077.1| chr4 6970298 6972424 -
5 domain predictions
2 GO terms
Lj4g3v0462790.2
n.a. PREDICTED: dof zinc finger protein DOF1.4-like [Cicer arietinum] gi|502142702|ref|XP_004505077.1| chr4 6970298 6972424 -
5 domain predictions
2 GO terms
Lj4g3v1635580.1
n.a. PREDICTED: dof zinc finger protein DOF3.3 [Glycine max] gi|356562852|ref|XP_003549682.1| chr4 24093329 24096281 +
5 domain predictions
2 GO terms
Lj4g3v1736210.1
n.a. PREDICTED: dof zinc finger protein DOF5.4-like [Glycine max] gi|356511564|ref|XP_003524495.1| chr4 24962748 24965189 -
5 domain predictions
2 GO terms
Lj4g3v2604580.1
n.a. PREDICTED: cyclic dof factor 4-like [Fragaria vesca subsp]. vesca] gi|470115510|ref|XP_004293942.1| chr4 35251827 35253302 -
5 domain predictions
2 GO terms
Lj5g3v1236780.1
n.a. transcription factor C2C2-Dof [Lotus japonicus] gi|193237589|dbj|BAG50071.1| chr5 20006798 20010778 +
5 domain predictions
2 GO terms
Lj6g3v2017500.1
n.a. PREDICTED: dof zinc finger protein DOF2.2-like [Cicer arietinum] gi|502077975|ref|XP_004485800.1| chr6 23809061 23810958 -
5 domain predictions
2 GO terms
LotjaGi1g1v0179900.1
n.a. Dof zinc finger protein; TAIR: AT5G62940.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6; TrEMBL-Plants: tr|A0A0S3RFR0|A0A0S3RFR0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0179900 LjG1.1_chr1 34660059 34662944 -
4 domain predictions
2 GO terms
LotjaGi1g1v0209300.1
n.a. Dof zinc finger protein; TAIR: AT5G60850.1 OBF binding protein 4; Swiss-Prot: sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4; TrEMBL-Plants: tr|V7CE95|V7CE95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0209300 LjG1.1_chr1 45895193 45896652 +
4 domain predictions
2 GO terms
LotjaGi1g1v0220800.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A0B2NXU5|A0A0B2NXU5_GLYSO Dof zinc finger protein DOF3.3; Found in the gene: LotjaGi1g1v0220800 LjG1.1_chr1 49066214 49070018 -
4 domain predictions
2 GO terms
LotjaGi1g1v0276000.1
n.a. Dof zinc finger protein; TAIR: AT3G52440.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9SVC5|DOF35_ARATH Dof zinc finger protein DOF3.5; TrEMBL-Plants: tr|G7J664|G7J664_MEDTR Dof domain zinc finger protein; Found in the gene: LotjaGi1g1v0276000 LjG1.1_chr1 67480220 67484825 +
4 domain predictions
2 GO terms
LotjaGi1g1v0290200.1
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|A0A0S3REK8|A0A0S3REK8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200 LjG1.1_chr1 70541033 70543692 +
4 domain predictions
2 GO terms
LotjaGi1g1v0290200.2
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|A0A1J7H8V2|A0A1J7H8V2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200 LjG1.1_chr1 70541040 70543396 +
4 domain predictions
2 GO terms
LotjaGi1g1v0290200.3
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|A0A1J7H8V2|A0A1J7H8V2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290200 LjG1.1_chr1 70541092 70542895 +
4 domain predictions
2 GO terms
LotjaGi1g1v0293200.1
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5; TrEMBL-Plants: tr|I3SV35|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0293200 LjG1.1_chr1 71137795 71139894 +
4 domain predictions
2 GO terms
LotjaGi1g1v0504600.1
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A151TC81|A0A151TC81_CAJCA Dof zinc finger protein DOF5.2; Found in the gene: LotjaGi1g1v0504600 LjG1.1_chr1 102212088 102215910 +
4 domain predictions
2 GO terms
LotjaGi1g1v0539000.1
n.a. Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr|A0A0K8K634|A0A0K8K634_CAJCA Dof protein; Found in the gene: LotjaGi1g1v0539000 LjG1.1_chr1 106754023 106756318 -
4 domain predictions
2 GO terms
LotjaGi1g1v0649100.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|I3SQR7|I3SQR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0649100 LjG1.1_chr1 120702185 120705192 +
4 domain predictions
2 GO terms
LotjaGi1g1v0794400.1
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|I3SV35|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0794400 LjG1.1_chr1 136562256 136564405 +
4 domain predictions
2 GO terms
LotjaGi1g1v0794400.2
n.a. Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|I3SV35|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0794400 LjG1.1_chr1 136562302 136564549 +
4 domain predictions
2 GO terms
LotjaGi2g1v0093900.1
n.a. Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A0K8K650|A0A0K8K650_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0093900 LjG1.1_chr2 29803378 29806852 -
4 domain predictions
2 GO terms
LotjaGi2g1v0093900.2
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A0K8K650|A0A0K8K650_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0093900 LjG1.1_chr2 29803378 29806852 -
4 domain predictions
2 GO terms
LotjaGi2g1v0302300.1
n.a. Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A1J7HNV8|A0A1J7HNV8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0302300 LjG1.1_chr2 77637424 77640879 -
4 domain predictions
2 GO terms
LotjaGi2g1v0329300.1
n.a. Dof zinc finger protein; TAIR: AT5G65590.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7; TrEMBL-Plants: tr|V7CM55|V7CM55_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0329300 LjG1.1_chr2 80478050 80479795 -
4 domain predictions
2 GO terms
LotjaGi2g1v0364300.1
n.a. Dof zinc finger protein; TAIR: AT2G28510.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1; TrEMBL-Plants: tr|A0A0K8K635|A0A0K8K635_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0364300 LjG1.1_chr2 86177898 86180368 -
4 domain predictions
2 GO terms
LotjaGi2g1v0372300.1
n.a. Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr|K7LTC4|K7LTC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0372300 LjG1.1_chr2 86920932 86923239 +
4 domain predictions
2 GO terms