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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0180800 |
| Transcript ID | LotjaGi1g1v0180800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbonic anhydrase; TAIR: AT5G14740.1 carbonic anhydrase 2; Swiss-Prot: sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|I3S092|I3S092_LOTJA Carbonic anhydrase; Found in the gene: LotjaGi1g1v0180800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35200612..35203541) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATAGCATAGCAGGCCCTGCAAGATGTACGGGGAATCATCTAGTTTTCACATCTCTCACATACTTAATTTGCATTG CCATTGGTATCTATAATCTATCTATTCTTTACCAGAAAATTTCACGCATTAATCCTTCCTTCATGCAAATTCATTAAATT AGTTACGAAACAATTAAACTTACTAACATGCAGTTTATTACATGAAATTGTTGCTTTTAGAGTACTTTAATCATTTGGTG ACAACCTTTATTGGAATCTGCAGAAGAAAGGGAAAAATATGGCAAAGCATTCACCTGACCAGCTAGCCATCGAAGAGTTG AAGAAGCTTATCAGGTTAACTACCTTCTAAACTGTAATCACAATCACATGACATACAAATTAATATAATGTTGCATAAAT TGCAATATATAGTGATAGACTATTTAATAATTAAACTTATGGGTTACAGAGAGAAGGAGGAACTTAATGAGTCTGCTGAT ACAAAAATTGAGGACGTTATAGCTGAGTTGCAGCTGCAGGGGTGTCACCCTACTCCTGAAACTGCTGAGCAGAGAATCAT TGATGGGTTTACTTACTTCAAGATCCACAATTTCGAGTATACTCATAAATTAATCAAAAAAATTCATTATCTAATTTCTC TATGTGGCCTTTGTGATTTCAATTTACTTTATAATTTGGATTCATAAATGTTTCTTCAGCAAGAACCCGGATCTATACAA GGAACTTGCTAAGGGCCAAAGCCCCAAGGTGATTAATTAAGTTTCTATATATTTGTGCTTTTTGTTTTCAAACTCTTTCT CCTTTTTATTATGTTTCATTTTTTTGGTTCATGTGTGTGCAGTTTCTGATATTTGCTTGCTCTGACTCTCGAGTGAGTCC TACCACTATCCTGAACTTCCAACCTGGAGAAGCTTTCATGGTTCGAAACATTGCTAACATGGTCCCTCCATTTAATCAGG TTCACTATTCTGCAGCATCATCACTCTGTAAAGTAGATATAGATCTACATTTAATTTAAGATATAGTTACAACTTAAATT ATTGAAATTCATTCCCCAACTCTACTTCAAATGAGTAGTTTTAACTTTTAATAATCAAGTATATATCTTTCTACAGCTGA GGTACAGTGGAGTAGGTGCGGCCATTGAGTATGCAATCTTGGAGCTTAAGGTAATAATTTAGCTTATATATATTCATAAA ATCATCAAACATATGATTTTAAATTACTCTTGCTCATCTCATGATTGCAACATGATTCTTGAAATTGTGGAACTGAGGAT AAATTTTCATCAGTTAAGATAATCATAATCCACTCATTCAAGAAATTTGAGTCATTTGATTTAAATTTGATCAAAATCAG ACAACTCACCCATTTCATAAAAATAAGAGAATGAACCATCCATCTTTATCGAAATTTTAAATTATTGTCTGCATGAATTT GAAATTTCACTTACGGAAGAAAATTCAAGTTGATCGTTATGGATTTATCTTCACTGCAACCAACATAATCAGAAATTCAC ACATTCAAATAATCTGAGCTGTTTTGCCAAGATCAGACAGCTAATCAATTTCATCAAAATGGGACTGCTCATATAAGCTT GAAATATGAGCCATCCGATCTTAATCGAACGTTTCAAACTCCTTGATGATTTCACTTGTTAGAAAATCCAAATTCTATGG TTATAGGTATTTAAAAAATATTTGTTGCAGATTGCAATTTAAAACCCAAAAGCTAATTTTCTTCGTTGATTGTGATTTTC AATACATGGAGGAATATAAGAGATGTTTAAGATCAATTAAGTACTCTTACAGGTGCCAAACATCCTGATCATTGGACACA GCCGCTGCGGTGGAATAGCAAGGCTTATGAGTCATCCAGAGGATGATTCTCCTTCCTTGTAAGACGAGTTTGTTTGATCT ACCCTGAGGGATATATGAAAACAAAAAATAACACATCTCCATGCTTTTTTTTGGAAGTACTTTAACTAAAAGCGTGTGTT ATTTTCATGTTTTCATATTTTCTAACGGTAAATCAAACTTAAATTCTGCCAAAAAAATGATATTTTCTAACGGACAAATT GGGATACATAATGCTTTTTATGGTTTAATTGAACTTTTCAGTGAGTTCATAGACGATTGGGTGAAAATTGGTTTACCTGC CAAAATCAAGGTCCTGAAGGAACATGCATGCTGTGATTCCTTAGAACAACGCACACTCTGTGAAAAGGTTAGCTCAGCTG CAATTATATATTTTAATTCGCATTCAGCTGCCATGCATGCTTGAAATTTTAATTAGTTACCATTTCAAACAATCTAATCT TGTTTGATAAGTTACAATGAAGCTAATTATACACTATGATTTGATTTGTGCATGCAGGAGTCAGTGAATAACTCCCTAGT GAACCTGCACACATATCCATTTGTTGATAGAGCAATAAGGAGCAAGGGGTTAGGGCTCTTTGGGGGTTACTATGATTTTG TGAATGGAGAGTTCAAGCTTTGGAAGTACGAGTCTCACTTCACCAAACACATTTCTATCCCTCACTGTCACTGAACCCAT GAGTTGACATGACTATCTAAATCCTTAGTAGGGAGGCTCTGAAGCATGGCACTACTTCATGCTTATTGTTGAAGTTGCAA GTTACTTTGTTGTGCTCTTTGTGGTTTTAAATTTCAAATAAATATCATCAACCCTTGAGTTGTAAAAATAAAGAGTGACT AGAGTTCAAGGCATCCAATCTGTGCTTTATGATAACTCTTAGGCTGATGTATCTATTCGTCATGTCGTAATAAAAGATTG AACTTCAGTGATTATGTTTCTTATTACCAATATTCATTGATTTTATTACTAACAAGACGGTTGAAAAGGATTGTTTGTAT TGTAACTCAATAATTGCAGATATTAATTAAAAGCGGTTAAACTTGTTTTG
CDS sequence (LotjaGi1g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGCATTCACCTGACCAGCTAGCCATCGAAGAGTTGAAGAAGCTTATCAGAGAGAAGGAGGAACTTAATGAGTC TGCTGATACAAAAATTGAGGACGTTATAGCTGAGTTGCAGCTGCAGGGGTGTCACCCTACTCCTGAAACTGCTGAGCAGA GAATCATTGATGGGTTTACTTACTTCAAGATCCACAATTTCGACAAGAACCCGGATCTATACAAGGAACTTGCTAAGGGC CAAAGCCCCAAGTTTCTGATATTTGCTTGCTCTGACTCTCGAGTGAGTCCTACCACTATCCTGAACTTCCAACCTGGAGA AGCTTTCATGGTTCGAAACATTGCTAACATGGTCCCTCCATTTAATCAGCTGAGGTACAGTGGAGTAGGTGCGGCCATTG AGTATGCAATCTTGGAGCTTAAGGTGCCAAACATCCTGATCATTGGACACAGCCGCTGCGGTGGAATAGCAAGGCTTATG AGTCATCCAGAGGATGATTCTCCTTCCTTTGAGTTCATAGACGATTGGGTGAAAATTGGTTTACCTGCCAAAATCAAGGT CCTGAAGGAACATGCATGCTGTGATTCCTTAGAACAACGCACACTCTGTGAAAAGGAGTCAGTGAATAACTCCCTAGTGA ACCTGCACACATATCCATTTGTTGATAGAGCAATAAGGAGCAAGGGGTTAGGGCTCTTTGGGGGTTACTATGATTTTGTG AATGGAGAGTTCAAGCTTTGGAAGTACGAGTCTCACTTCACCAAACACATTTCTATCCCTCACTGTCACTGA
Protein sequence (LotjaGi1g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKHSPDQLAIEELKKLIREKEELNESADTKIEDVIAELQLQGCHPTPETAEQRIIDGFTYFKIHNFDKNPDLYKELAKG QSPKFLIFACSDSRVSPTTILNFQPGEAFMVRNIANMVPPFNQLRYSGVGAAIEYAILELKVPNILIIGHSRCGGIARLM SHPEDDSPSFEFIDDWVKIGLPAKIKVLKEHACCDSLEQRTLCEKESVNNSLVNLHTYPFVDRAIRSKGLGLFGGYYDFV NGEFKLWKYESHFTKHISIPHCH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 258 | 258 | 4.7E-120 | – | |
| PANTHER | 1 | 258 | 258 | 4.7E-120 | – | |
| Coils | 7 | 38 | 32 | - | – | |
| Gene3D | 12 | 259 | 248 | 1.2E-72 | ||
| SUPERFAMILY | 43 | 256 | 214 | 4.71E-63 | ||
| CDD | 58 | 247 | 190 | 3.38142E-83 | – | |
| SMART | 78 | 248 | 171 | 2.6E-49 | ||
| Pfam | 86 | 243 | 158 | 5.8E-40 | ||
| ProSitePatterns | 90 | 97 | 8 | - | ||
| ProSitePatterns | 134 | 154 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbonate dehydratase activity | Catalysis of the reaction: H2CO3 = CO2 + H2O. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Carbon utilization | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. |
Expression pattern of LotjaGi1g1v0180800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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