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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001765
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.796s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116819.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357489981|ref|XP_003615278.1| chr0 51454309 51455493 +
5 domain predictions
2 GO terms
Lj0g3v0163759.1
n.a. PREDICTED: carbonic anhydrase, chloroplastic-like [Cicer arietinum] gi|502095383|ref|XP_004490442.1| chr0 77430158 77433082 -
5 domain predictions
2 GO terms
Lj0g3v0163759.3
n.a. PREDICTED: carbonic anhydrase, chloroplastic-like [Cicer arietinum] gi|502095383|ref|XP_004490442.1| chr0 77430158 77433082 -
5 domain predictions
2 GO terms
Lj0g3v0286909.1
n.a. PREDICTED: carbonic anhydrase, chloroplastic-like [Cicer arietinum] gi|502095383|ref|XP_004490442.1| chr0 149143657 149144767 +
4 domain predictions
2 GO terms
Lj1g3v0183130.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357489979|ref|XP_003615277.1| chr1 2126423 2128561 +
5 domain predictions
2 GO terms
Lj1g3v0183130.2
n.a. Carbonic anhydrase [Medicago truncatula] gi|357489979|ref|XP_003615277.1| chr1 2126423 2128561 +
2 domain predictions
2 GO terms
Lj1g3v0410090.1
n.a. carbonic anhydrase [Lotus japonicus] gi|28625017|emb|CAD66064.1| chr1 4642122 4644918 +
6 domain predictions
2 GO terms
Lj1g3v0410100.1
n.a. carbonic anhydrase [Lotus japonicus] gi|28625017|emb|CAD66064.1| chr1 4642141 4644900 +
6 domain predictions
2 GO terms
Lj2g3v1002750.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357495991|ref|XP_003618284.1| chr2 15308283 15312693 +
6 domain predictions
2 GO terms
Lj2g3v1002750.2
n.a. carbonic anhydrase [Pisum sativum] gi|169057|gb|AAA33652.1| chr2 15308283 15312693 +
6 domain predictions
2 GO terms
Lj2g3v1034450.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357495989|ref|XP_003618283.1| chr2 16498251 16498448 -
3 domain predictions
2 GO terms
Lj2g3v1034470.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357495991|ref|XP_003618284.1| chr2 16498557 16498664 -
5 domain predictions
2 GO terms
Lj2g3v1403790.1
n.a. PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] gi|356501896|ref|XP_003519759.1| chr2 22142317 22147550 -
6 domain predictions
2 GO terms
Lj6g3v2193530.1
n.a. Carbonic anhydrase [Medicago truncatula] gi|357445965|ref|XP_003593260.1| chr6 25393573 25396455 +
6 domain predictions
2 GO terms
LotjaGi1g1v0137800.1
n.a. Carbonic anhydrase; TAIR: AT4G33580.1 beta carbonic anhydrase 5; Swiss-Prot: sp|Q94CE3|BCA5_ARATH Beta carbonic anhydrase 5, chloroplastic; TrEMBL-Plants: tr|V7B641|V7B641_PHAVU Carbonic anhydrase; Found in the gene: LotjaGi1g1v0137800 LjG1.1_chr1 22496405 22501069 +
3 domain predictions
2 GO terms
LotjaGi1g1v0180800.1
n.a. Carbonic anhydrase; TAIR: AT5G14740.1 carbonic anhydrase 2; Swiss-Prot: sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|I3S092|I3S092_LOTJA Carbonic anhydrase; Found in the gene: LotjaGi1g1v0180800 LjG1.1_chr1 35200612 35203541 +
3 domain predictions
2 GO terms
LotjaGi2g1v0245900.1
n.a. Carbonic anhydrase; TAIR: AT3G01500.2 carbonic anhydrase 1; Swiss-Prot: sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|D2DWB7|D2DWB7_PHAVU Carbonic anhydrase; Found in the gene: LotjaGi2g1v0245900 LjG1.1_chr2 71123441 71128312 +
3 domain predictions
2 GO terms
LotjaGi2g1v0245900.2
n.a. Carbonic anhydrase; TAIR: AT3G01500.2 carbonic anhydrase 1; Swiss-Prot: sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|V7BYL2|V7BYL2_PHAVU Carbonic anhydrase; Found in the gene: LotjaGi2g1v0245900 LjG1.1_chr2 71123441 71128312 +
3 domain predictions
2 GO terms
LotjaGi2g1v0256200.1
n.a. Carbonic anhydrase; TAIR: AT3G01500.1 carbonic anhydrase 1; Swiss-Prot: sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|G7KIQ9|G7KIQ9_MEDTR Carbonic anhydrase; Found in the gene: LotjaGi2g1v0256200 LjG1.1_chr2 72258928 72261322 -
3 domain predictions
2 GO terms
LotjaGi2g1v0320400.1
n.a. Carbonic anhydrase; TAIR: AT5G14740.2 carbonic anhydrase 2; Swiss-Prot: sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic; TrEMBL-Plants: tr|I3T6E8|I3T6E8_LOTJA Carbonic anhydrase; Found in the gene: LotjaGi2g1v0320400 LjG1.1_chr2 79547740 79554993 -
3 domain predictions
2 GO terms
LotjaGi5g1v0092700_LC.1
n.a. Carbonic anhydrase; TAIR: AT1G58180.1 beta carbonic anhydrase 6; Swiss-Prot: sp|Q9C6F5|BCA6_ARATH Beta carbonic anhydrase 6, mitochondrial; TrEMBL-Plants: tr|I1JGZ7|I1JGZ7_SOYBN Carbonic anhydrase; Found in the gene: LotjaGi5g1v0092700_LC LjG1.1_chr5 16292091 16294283 -
2 domain predictions
2 GO terms
LotjaGi6g1v0349700.1
n.a. Carbonic anhydrase; TAIR: AT4G33580.1 beta carbonic anhydrase 5; Swiss-Prot: sp|Q94CE3|BCA5_ARATH Beta carbonic anhydrase 5, chloroplastic; TrEMBL-Plants: tr|I3T0V3|I3T0V3_LOTJA Carbonic anhydrase; Found in the gene: LotjaGi6g1v0349700 LjG1.1_chr6 66216332 66219911 +
3 domain predictions
2 GO terms