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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0181700 |
| Transcript ID | LotjaGi1g1v0181700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase non-catalytic subunit protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|Q40161|GP1_SOLLC Polygalacturonase-1 non-catalytic subunit beta; TrEMBL-Plants: tr|I1JX67|I1JX67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0181700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35404158..35407128) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATGGCAGTTCAGTAGTACAAAGGGTTATAATATGCTTTCCACGTCCAATTTGATTTTAACATGTTCTGACACTCAT TCAATAAATAGAAAGAGAGTGAATTGAAAACTTTCGCACTTCTCTATATTTAATTAGCCTTCCCTTTCAAGTGATCGATT GTCCCTGTGTTTTTCAGTTTTTCTTCTATATATCACTCTTTCTCTCCATCAGGTACACAACAAGCTCAGCAATTCAAAAT GAAGATTCACTTCTTCTGCCTTCTATTGTCACTCTCATCTTTCCATGTAAGAAACACTACTTCAGTTGCACCATCTTTTA AAATTTTCACTTCAATTTCTCTATCTAATGTTTAATTAACCTTACTACATTACATTGCATTGCTCCTTAATTTTGCTAAA GTTGTTAATTTCTTCTTGATGTTACATTAGATTACGATTTGAGCCCTTATCGCTTCGATTAGTCTCTAAAAAAATATATT TATGAATGCAGGTTTCTCTAGCAATAACCACTATCAGCAAAGGAACCCCACAACAAACACAAGAAAATTCCAAGCAGATA GTAAACCCTTTCAGCCCCAAAGCCTCTCTCATTCGTTACTGGAACAAACACATCTCCAACAAGCAGACAATTCCTCATTT TCTTCTCTCTAAAGCTTCCACTCTCACTCCACAACAATATGCAACTCTCATGAACCTCCTCAACCAAAAACAACATAAAC CCTTCTTCTCTTATAAGGAGCTTCACAACTCCCTATGCACCACACCAAACTTATTATGTTCCTTCGACGAGGACCAAAAC CAAAATGACTCAAACATTACCAAAGCCGGCCGCGGTGACGCCGACTTCACCATCTATTCCAACAAACGCTTCTCCAACTA CGGCTCCTCCCGAGCCGGCGGGTTCAACACGTTCAAGAACTACTCGAACGGGCTGAACACCAACCGCGACTCGTTCAAAA TTTACAGCGCCGCCACAACCCGCCACGGCGACCAGTTCAAAAGCTACGCCGAGAACGGCAACATTGCCAACGCCAACTTC ACCAGCTACGGCGCCGGCGCCACCTCCGGTTCCGGCGACTTCGCCAGCTACGACAAGCTCGTCAACGTCCCCAACCTCGG CTTCACCACCTACTACTCCGCCGCCGCAAATCACAAGCTCTCGTTCTCCAGCTACGGCAACGAAACAAACTCCGGCTCAC AATCATTCACCAGCTACGGCAAACGCGTCCGCGGCGGAACCAGCGATTTCACAAACTACGCCGCCGGATCCAACATTCTG CAATCCTCATTCACCGGTTACTCTGAGTTAGGATCCGGAAAAACGAACGATTCGTTCAGATCCTACAGTTTCAACGGCAA CAACCCCCGCAACAGCTTCAAAAGCTACGGCACCGGATCCACCTCCGCCACCGACACATTCGTCAGCTACCGGAACCGCG CCAACGTCGGCGACGACACGTTCCAGAGCTACGCCGGGAAATCAAGCTCCGGCGCCGCCACGTTTGTGAACTACGGCCAG TCGTTCAACGTCGGAAACGACACATTCACCGAGTACGGGAAAGGCTCTTCCGGTAAGACCGTGTTTGGGTTCAAGATTTA CGGGTTGGGACGCGCGTTCATAGGGTACAACAAGCAAGGCGCGTCGTTTTCTGCGTACAGCAATTTCAGCGTGACCAGTG GCAGAGTTGTAAATAGATGGGTTGAGCCGGGTAAATTCTTTAGGGAGTCGATGTTAAAAGAAGGGAATGTGATAGTTATG CCAGATATTGAGGATAAAATGCCTCAAAGGTCGTTTTTACCCCTGGCAGTTACGTCAAAATTGCCGTTTTCGTTGTTGAG GCTCGGAGAAATGAGGGAGATTTTCCACTCGAGGGAGGGATCCGCAAGTGAGCGCGTGATTGTTAATGCGCTGGCGGAAT GCGAGAGGTTGCCGAGCCGTGGCGAGACAAAGCGGTGTGTTGGGTCGCTAGAGGAGATGGTGGAGTTTGTTGTCTTGGTG GTGGGTCGCAATGCGGTTGCGAGAGCCACCGAGAATGTGAAGGGTTCGAGGAAGAACGTGATGATTGGGAGGGTTTATGG TGTGGATGGTGGAAAAGTGACGAAGTCAGTTTCGTGTCACCAGAGTTTGTACCCTTACTTGCTGTATTATTGTCACTCTG TCCCCCAAGTGAGAGTTTATGAAGCTGAAATTCTTGACGTGGACACCAAGTTGAAGATTAATCATGGGGTTGCCATTTGT CACCTGGACACGTCAGCGTGGGGCCCAGAACATGGAGCTTTCGTGGCACTTGGGGCTGGACCCGGGAAAATTGAGGTGTG CCACTGGATTTTCCAAAACGACATGACGTGGACCACTGCCGAGTGAGAAGAAACGAAGGTTTTTGTTTACCGTTAGTAGC AGCAGCACACGTTAGAGAATTGAATGATCTAATAGAGTGAAACTGAGACCACATTTGTGTTGTTTTTAGTGGTTTGGAAT TTGGACTCTTGTGCGGTCATGCCTCATGATCGTGACATTTTTTTTTGTTATTTAATAATTTGTTGTGCCTTTGAGAAATC TAAAATGTTTGTTTGATAGTGACTAGTATGTTCGTTTTGGACACGCCTTTTTTTTTAATGTAATAGTGTATATTAAAAGA CGTGAATTGGCATTCAGGTGACAAATTAAGTGGAGAGGTCAAGAGAATCTGTGGAGGGCTTTCCCCTTTATGGGACTGCA TTAGAGAATGATTTCAAGGTTCTGATGATGGGATGATGGTGCCATGGTGGTATGGTGTTGAATGTTGTATTGTTACTGTA TGACTTGGCTTTCTGTTTGGATTTTTTTTTATAAGCAAGTGAAATATATTGAAGAGAAGTACAAGGGGTACTTCAACCCA ATACAAGAAGAAAGAAGGGAAAGAATAGTACAATGTAGCAAATTACATCAATGCGCTCACTACAAGTATAAAAAAGTAAG GAAACTTTTCT
CDS sequence (LotjaGi1g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTCACTTCTTCTGCCTTCTATTGTCACTCTCATCTTTCCATGTTTCTCTAGCAATAACCACTATCAGCAAAGG AACCCCACAACAAACACAAGAAAATTCCAAGCAGATAGTAAACCCTTTCAGCCCCAAAGCCTCTCTCATTCGTTACTGGA ACAAACACATCTCCAACAAGCAGACAATTCCTCATTTTCTTCTCTCTAAAGCTTCCACTCTCACTCCACAACAATATGCA ACTCTCATGAACCTCCTCAACCAAAAACAACATAAACCCTTCTTCTCTTATAAGGAGCTTCACAACTCCCTATGCACCAC ACCAAACTTATTATGTTCCTTCGACGAGGACCAAAACCAAAATGACTCAAACATTACCAAAGCCGGCCGCGGTGACGCCG ACTTCACCATCTATTCCAACAAACGCTTCTCCAACTACGGCTCCTCCCGAGCCGGCGGGTTCAACACGTTCAAGAACTAC TCGAACGGGCTGAACACCAACCGCGACTCGTTCAAAATTTACAGCGCCGCCACAACCCGCCACGGCGACCAGTTCAAAAG CTACGCCGAGAACGGCAACATTGCCAACGCCAACTTCACCAGCTACGGCGCCGGCGCCACCTCCGGTTCCGGCGACTTCG CCAGCTACGACAAGCTCGTCAACGTCCCCAACCTCGGCTTCACCACCTACTACTCCGCCGCCGCAAATCACAAGCTCTCG TTCTCCAGCTACGGCAACGAAACAAACTCCGGCTCACAATCATTCACCAGCTACGGCAAACGCGTCCGCGGCGGAACCAG CGATTTCACAAACTACGCCGCCGGATCCAACATTCTGCAATCCTCATTCACCGGTTACTCTGAGTTAGGATCCGGAAAAA CGAACGATTCGTTCAGATCCTACAGTTTCAACGGCAACAACCCCCGCAACAGCTTCAAAAGCTACGGCACCGGATCCACC TCCGCCACCGACACATTCGTCAGCTACCGGAACCGCGCCAACGTCGGCGACGACACGTTCCAGAGCTACGCCGGGAAATC AAGCTCCGGCGCCGCCACGTTTGTGAACTACGGCCAGTCGTTCAACGTCGGAAACGACACATTCACCGAGTACGGGAAAG GCTCTTCCGGTAAGACCGTGTTTGGGTTCAAGATTTACGGGTTGGGACGCGCGTTCATAGGGTACAACAAGCAAGGCGCG TCGTTTTCTGCGTACAGCAATTTCAGCGTGACCAGTGGCAGAGTTGTAAATAGATGGGTTGAGCCGGGTAAATTCTTTAG GGAGTCGATGTTAAAAGAAGGGAATGTGATAGTTATGCCAGATATTGAGGATAAAATGCCTCAAAGGTCGTTTTTACCCC TGGCAGTTACGTCAAAATTGCCGTTTTCGTTGTTGAGGCTCGGAGAAATGAGGGAGATTTTCCACTCGAGGGAGGGATCC GCAAGTGAGCGCGTGATTGTTAATGCGCTGGCGGAATGCGAGAGGTTGCCGAGCCGTGGCGAGACAAAGCGGTGTGTTGG GTCGCTAGAGGAGATGGTGGAGTTTGTTGTCTTGGTGGTGGGTCGCAATGCGGTTGCGAGAGCCACCGAGAATGTGAAGG GTTCGAGGAAGAACGTGATGATTGGGAGGGTTTATGGTGTGGATGGTGGAAAAGTGACGAAGTCAGTTTCGTGTCACCAG AGTTTGTACCCTTACTTGCTGTATTATTGTCACTCTGTCCCCCAAGTGAGAGTTTATGAAGCTGAAATTCTTGACGTGGA CACCAAGTTGAAGATTAATCATGGGGTTGCCATTTGTCACCTGGACACGTCAGCGTGGGGCCCAGAACATGGAGCTTTCG TGGCACTTGGGGCTGGACCCGGGAAAATTGAGGTGTGCCACTGGATTTTCCAAAACGACATGACGTGGACCACTGCCGAG TGA
Protein sequence (LotjaGi1g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIHFFCLLLSLSSFHVSLAITTISKGTPQQTQENSKQIVNPFSPKASLIRYWNKHISNKQTIPHFLLSKASTLTPQQYA TLMNLLNQKQHKPFFSYKELHNSLCTTPNLLCSFDEDQNQNDSNITKAGRGDADFTIYSNKRFSNYGSSRAGGFNTFKNY SNGLNTNRDSFKIYSAATTRHGDQFKSYAENGNIANANFTSYGAGATSGSGDFASYDKLVNVPNLGFTTYYSAAANHKLS FSSYGNETNSGSQSFTSYGKRVRGGTSDFTNYAAGSNILQSSFTGYSELGSGKTNDSFRSYSFNGNNPRNSFKSYGTGST SATDTFVSYRNRANVGDDTFQSYAGKSSSGAATFVNYGQSFNVGNDTFTEYGKGSSGKTVFGFKIYGLGRAFIGYNKQGA SFSAYSNFSVTSGRVVNRWVEPGKFFRESMLKEGNVIVMPDIEDKMPQRSFLPLAVTSKLPFSLLRLGEMREIFHSREGS ASERVIVNALAECERLPSRGETKRCVGSLEEMVEFVVLVVGRNAVARATENVKGSRKNVMIGRVYGVDGGKVTKSVSCHQ SLYPYLLYYCHSVPQVRVYEAEILDVDTKLKINHGVAICHLDTSAWGPEHGAFVALGAGPGKIEVCHWIFQNDMTWTTAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 640 | 639 | 0.0 | – | |
| PANTHER | 2 | 640 | 639 | 0.0 | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 640 | 620 | - | – | |
| SMART | 423 | 639 | 217 | 7.6E-109 | ||
| ProSiteProfiles | 425 | 639 | 215 | 64.524 | ||
| Pfam | 425 | 637 | 213 | 3.0E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0181700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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