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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0182800 |
| Transcript ID | LotjaGi1g1v0182800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|A0A0L9UBK6|A0A0L9UBK6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35628433..35630951) extracted from Lotus japonicus Gifu genome v1.2.
CCACATGTCACTCTTAGTCTTAAGTCTCTATATATATATCTGCAGTTTCTCTTTTCTCGATATACTTTCTCATCTCTTAT AGTACTTTCTTTCAACTATGGAGTCTCATTGGCTTCTTATATTGTTTTCTCTCAATGTGAGCTTAAACTTTCTGATTTCA TCTCATTTTTACTCAGTAAATTGTCAAGTTATTCTTTAACAATTACTTTATGAAATGACAAACTTTGGCCTGAATGTATA TGCAGTTGATGGTGATGACAGCCCATGGTGCCTTACCTGCTGAACTTTACTGGAAAAGGAAGCTTCCAGCTACCCCGGTT CCCAAAGCAATCACAGAGCTATTGAGTAAGAAACTAAAGAAACATGCTTGGTAAAATCATATTGAAATTTAATTGTCTAC TAGTTTTACTTCTTCAAATTTTAGAACAGAACATTCAGGAATTTTATGATGAAAATGTTGTAAAATAAAAGGAAATTTGG AAAATGAAAAAAAAAAAGGAAACTTCATTAATCATCTAAGTCAATAAGTTCATATTTTCCTTTTCTTTGTTTTAGTATAA TACTTTTCCCTATTTTCCCTTTTTTGGATTTGGTATACTATTAGCTAATATAGTCAATTCCCTTTCATTTTAATTTAAAT GAACTTGCAGGAGGAGATGTAAACACAGGGAAGAGTGTTGATACTGATACTCAATTACAAGATGAACTCGTCATATCTGA TCTTGGTGCTAAGGAGATTCCATCACAAGAGAATGCACTACTCTTTTATGCTTATTATGTTGCTAAAGAGACTCAATCAA GAAGTTTCTTTGAGGAATATCAACTCCATGCCGGCAACAAATTCAACGTGAACTTGAATAAGATAAAATCTGTTGTCCCA TTGTTGCCTCGCGAAATCGCAGACCATATACCATTCTCACTAGACAAGATGAATGAAATATTTGAGATGCTATCTGTGAA ACTGGAATCAAAGAATGCTGAGATTGTAGAGAAAACCATTGGTGATTGTGAATCGCCTCCAATGGACGGAGAGGAAAGAT ACTGTGCAACGTCATTGGAATCCATGGTGGATTTCATCACTTCCAAGCTTGGGAACAATGTGCATGCTATGTCAACAGAG GTGACAAAGGAAACTAAGTTACAAAATCTTTTAGTTAAAGATGGAGTGGAGAAGTTAGCAGATGATTACATAACTGTTTG TCATCCTATGGCTTACCCGTATGTTGTGTTCTGGTGTCATAAATTACAAAAGACCAATGCATATTTTGTTCCTCTAGAGG GAGAAGATGGGGTTAGAGTAAAAGCAGTTGCTGTGTGCCACAAAGACACATCAAAATGGGATCCAAATCACGCGGCATTC CAAGATCTGAAAGTCAAGCCTGGAACGGTTCCGGTGTGTCATTTCTTACCCGAGGGCCATCTTCTTTGGCTTCCCAACTA GATTACCTAATTAAATCTGTCCTTGTATGCTTAAATAAATGGCAAGAACGATGGAACTTAAAATTTCATGTGACTGGGAA ACGTATTGTTGCAAATGTTGAAATTGTCACAATATCTAGTTCAATTTGATATAATTGGGTTCTTGAATCTTGATTTAGGC CTTTTCCAACCACATTTATCAAACAAGTTTGGTTTACTATACTTACTGATCAACTGATGCAGAGAAATAATATAAGATCC AAGATGCATGTGAGAGGGCCTGTAATTATGTAGAAAGTACAAATTTCACTACAGAGATGCATAAAGTAATAACAGACAAG CTTTGGAAAATATAAAGCCAGTCCATACTTTCCAAAGAAGAGATACTCTAGCTAATTAAAATTGCAGAAAATCTTCTAAT CCTTTACCCTTTTAATTAAAATCCCATATCAATGGGTACTGATCATGGTATGTTTGGAAGTAACGAAAACTAGAGTATTT CCAAGCTACAGAGAAGTCCATGGTAACTAAACTCTGGGTCATGTGTCAAATGATATGGATTTTTCATCTTCCTCTTTCAA TGCATTTGTCATCACTGCAACTTGACTCATACTTGGCCTATCATTTGGAGAAGCACTTATGCATTTTAATGCTATCTGCA ACAAGTTCATCATCCTCTCTTCAGAAATACTTTGTGAGATTAGGAACTTGTCAAAAACTTCCACAGTCCATTCCTCTCTG ACCACTGAATCCACCCATTGAACCAGATCGAATCCATCATTCTTAACTACTTTCCCTGTAAGCAGCTCCAGAAGCATCAC ACCAAAGGCATATACATCAGCTTTGAAGGTGGCTGCAATCGGGTTTCTGTTATCCCGACTTTTCTTACGAGAAATGGAGT CATCTTCAGCTACCATTAGGCCATATTCGCTTATTCGCGGATCCATATTCTTGTCAAACAAAATGTTACTTGATTTTAAG TTACCATGTGCTATTCCACTCTCACTGAGCTCCTCATGCATATATGCCAAAGCCTTAGATACCTTTGCAGCAACATTTAG TCTGCTTCCCCAGTCAAGAGAGTTCCCACTTTGAGATCC
CDS sequence (LotjaGi1g1v0182800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTCATTGGCTTCTTATATTGTTTTCTCTCAATTTGATGGTGATGACAGCCCATGGTGCCTTACCTGCTGAACT TTACTGGAAAAGGAAGCTTCCAGCTACCCCGGTTCCCAAAGCAATCACAGAGCTATTGAGAGGAGATGTAAACACAGGGA AGAGTGTTGATACTGATACTCAATTACAAGATGAACTCGTCATATCTGATCTTGGTGCTAAGGAGATTCCATCACAAGAG AATGCACTACTCTTTTATGCTTATTATGTTGCTAAAGAGACTCAATCAAGAAGTTTCTTTGAGGAATATCAACTCCATGC CGGCAACAAATTCAACGTGAACTTGAATAAGATAAAATCTGTTGTCCCATTGTTGCCTCGCGAAATCGCAGACCATATAC CATTCTCACTAGACAAGATGAATGAAATATTTGAGATGCTATCTGTGAAACTGGAATCAAAGAATGCTGAGATTGTAGAG AAAACCATTGGTGATTGTGAATCGCCTCCAATGGACGGAGAGGAAAGATACTGTGCAACGTCATTGGAATCCATGGTGGA TTTCATCACTTCCAAGCTTGGGAACAATGTGCATGCTATGTCAACAGAGGTGACAAAGGAAACTAAGTTACAAAATCTTT TAGTTAAAGATGGAGTGGAGAAGTTAGCAGATGATTACATAACTGTTTGTCATCCTATGGCTTACCCGTATGTTGTGTTC TGGTGTCATAAATTACAAAAGACCAATGCATATTTTGTTCCTCTAGAGGGAGAAGATGGGGTTAGAGTAAAAGCAGTTGC TGTGTGCCACAAAGACACATCAAAATGGGATCCAAATCACGCGGCATTCCAAGATCTGAAAGTCAAGCCTGGAACGGTTC CGGTGTGTCATTTCTTACCCGAGGGCCATCTTCTTTGGCTTCCCAACTAG
Protein sequence (LotjaGi1g1v0182800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESHWLLILFSLNLMVMTAHGALPAELYWKRKLPATPVPKAITELLRGDVNTGKSVDTDTQLQDELVISDLGAKEIPSQE NALLFYAYYVAKETQSRSFFEEYQLHAGNKFNVNLNKIKSVVPLLPREIADHIPFSLDKMNEIFEMLSVKLESKNAEIVE KTIGDCESPPMDGEERYCATSLESMVDFITSKLGNNVHAMSTEVTKETKLQNLLVKDGVEKLADDYITVCHPMAYPYVVF WCHKLQKTNAYFVPLEGEDGVRVKAVAVCHKDTSKWDPNHAAFQDLKVKPGTVPVCHFLPEGHLLWLPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PANTHER | 2 | 59 | 58 | 2.9E-123 | – | |
| PANTHER | 2 | 59 | 58 | 2.9E-123 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 309 | 285 | - | – | |
| PANTHER | 93 | 308 | 216 | 2.9E-123 | – | |
| PANTHER | 93 | 308 | 216 | 2.9E-123 | – | |
| SMART | 97 | 309 | 213 | 2.9E-82 | ||
| Pfam | 99 | 307 | 209 | 1.8E-76 | ||
| ProSiteProfiles | 99 | 309 | 211 | 79.092 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0182800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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