Transcript — View — Lotus Base

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LotjaGi1g1v0184700.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0184700
Transcript ID	LotjaGi1g1v0184700.2
Related isoforms 1	LotjaGi1g1v0184700.1
Lotus japonicus genome version	Gifu v1.2
Description	Two-component response regulator; TAIR: AT3G48100.1 response regulator 5; Swiss-Prot: sp\|Q9SB04\|ARR5_ARATH Two-component response regulator ARR5; TrEMBL-Plants: tr\|I3SAC7\|I3SAC7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0184700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:36169679..36172825) extracted from Lotus japonicus Gifu genome v1.2.

CCTATAATGGTTTGACCCGTCTTGAAATTGTGAGAGCAACGTACAACAACCCACAATAGTCACTACTGTTCACAATCTCA ATAAAAATATAAGATTTTGACAGCAGAAGCGACAAGTGCAGGTGGGATAATCCCTTTTGCTGGATTTTGCCGAAAAAACA AACAAGATCTCTCAGATTTCGATTCGAATCCCAAATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTCACCTTTC ATTCCATATATATTATTCCCCTTCCTTTTCACCTTCCCATTCAACTCCATCATCTTCACTTTTCCCATTTATACCCATTT TTCTTCTCATCCACAAACTTCATCATCATTTTCATTTTCATCTTAATTTCGAGATACCCTTTTGATGGATACCGCCGGCG ATGTTCTCAGGCAGAGTTTACCCGCAATGGATGCAGGGGAGCTGCATGTGCTTGCTGTTGATGACAGCCATGTCGACCGC AAGGTCATTGAACGGTTGCTCAGAATCTCTTCTTGCAAAGGTAAACATGGGAAATCAAATTCCATGATTTTTGTGTTTTT TTGTTGCATTTAGATTGGTTTCTGATGGTTTTTGGAACTGGGTTTTTGCAGTTACAGTTGTAGATAGTGGAACCAGAGCT TTGCAGTATCTGGGGTTGGATGGGGAGAAGAGCTCAATTGGTCTTGATGTAAGAAAACTTGGCTCTAGAATTGTTTAGAT GCATTTAACTTTACTGTTTAATGGTGTTTGTTACTTGCTTGAATTGGAGCTTATGTTGTTGTTTTGTTTGATTGTGGTTG CAGAGTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCTGGGATGACAGGGTACGAACTGTTGAAAAAAATAAA GGTGAGATTGAGAATGGTGATTTTGTTTTCTTATCTTGATCATGGAAGAGAAGAAGAAATTAATTGAAATATTAATTGTT AGTTGTTTATTTTGTCTTCTAATTTTTTGTATTCCTTCATGTTAATTTCAGCAGGAGTCATCTGTTTTCAGAGAGATTCC AGTGGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGGTAAGCTCTTGATTCAAATTAAAAAGCTACTTTGT TCTGGTATAGTTTTTAATTTTCTAGAAAGCATGTTGTTGTTTAGCTGAACTTTTGAATTCAATTTCTTGATTTGTGTGGT TGTATTTACATTTTGGATGAGGTTTGTTGATTTGCATATGCTCCTAATAACTTTGAATGGATTTGGATCATTTGAGGTGT GTTTGTATTTCTGTTAGTGCAGATCCAATTTGAATGTGCTTTTGACCAATTTGGCAATCCATATCTTTTGTTAATTGAAT AAATGTATTTTTGACCAACTTTTACATAGCAATAATTGCTTCTTGTAATGATGTACATACTAAAATCTACCATATCAGAG AGTATCCCTTGTGGGGATTAGAATACTCAATAATAAAGGAAATAATTGTATGGAAGATCACAGGAGATCTTAATAGTAGA TATTTATGCCTAGGCTTGCGTTGTCGTGTGGATTAGTGCTCATAATGCTTTAAGCCTTCACAATTACCAATAATATGAAA TACTCCCTCCATTCCTATATAACTGATACTTTAAGGTTGTGGCACAAATATTAAGAAGTAGCAATTAATATTCTTGTTTT ACTAAAATTACTATCTAACTTCCTATTATACCCTTTATCTCTCTTATCAATTCTAACTTTTCAATTTTCCTACAAACAAT AAATGAAGGGCATAATTGATAAAGTAGCATTAATGCTCTCTTGAAATTGTAAAAGTATCAGTTAAATAGGAACAAAAAAA AGAACCAAATTAGTATCAGTTATTTAGGAACGGAGGGAGTATGTCTTAGTGCTAATTTTAAACTTAAAATATTTTTAAAT TGAAGCTGATGCCTTAGGATTCGGGTCCCAATAACACATGGCCACTATCCTGTTCCTAAAAATGGAGGTCTTACTTCAAC AAAAAGTGCATCACGATGTGTTATTTTCTTTCGATTTTATTTTCTTAATTGGTAGGATTAATCTCTCAATAATCTGATAA TGTTAGACACATGTAGTGTTGTGGAACATATTACTTTGCTTGCATTTGTGGCAACAATGATTGAAGCTTGATGAAATCAG ATTCCTCTTTGTTTACTAGTCAATTAATTGAACAAGGACCTTGTTGGCATGACAGCAGTTATTGTTATTGTCATTGTTAT AATTGCCACATAATTCTCTATTTTATTAACATCATCTAGGAAGCTTGCATTTGTTCCTGAATTATTGGCAAATACTGCCA TGTTGAACATCATCTAGGACCTTGTTGGCATGACAGCAGTTATTGTTATTGTCATTGTTATAATTGCCACATAATTCTCT ATTTTATTAACATCATCTAGGAAGCTTGCATTTGTTCCTGAATTATTGGCAAATACTGCCATGTTGAACCCACTTTCTCA TTGCTTAGTTTTTATGATTGTCAGTTGCTTGGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCTGTAAAGTTGTCAGATG TTAAACGCCTAACAGATTTCATCATGAGAGGTGGAGAGAAGAAGGTTGAACAAAGATGTCAAAAAAGAAGCAGATCAGAT GATTGCAGCTCATCTTTATCAACTGCATTCTCATTGGTTTCTCATCCATGCGATCTATCATCATCACCTGTTCTATCAAC ACTTTCACCATCTGCAATGTCATCAAAGAAATCTAGACTATGATGAGTAGTGATCTTTATGTCTCCATTTTTGCAAATTG TTGATATCCCAAAGCCTCTGATGTAATTTCCGATTCTGAAATATAGATTGCTGACAATGAGTACTAGGATTAGGAACGAG GAAGGGGATGTCAGAATCACTTTTTTGTTTTGGCTTAATTCTAACATTGTACAAAAGATATTTATTGAAAATTAATGAAA ACCCTCTATTTTGAAGGGTTTTACTTCAAAATTATGTTTACTTTTGGTCTATATAGAGTGTAGTTCCTCTTGGTATTATT TTTAATAAGCATTTTATTGGTATATGTACCTCCATGGTGCGATTAAACTTGGTTCTCAAGCTTTATGTACCCCCATATTG CTGTCTGAGCTTACCCTACCACATGCA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0184700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATACCGCCGGCGATGTTCTCAGGCAGAGTTTACCCGCAATGGATGCAGGGGAGCTGCATGTGCTTGCTGTTGATGA CAGCCATGTCGACCGCAAGGTCATTGAACGGTTGCTCAGAATCTCTTCTTGCAAAGTTACAGTTGTAGATAGTGGAACCA GAGCTTTGCAGTATCTGGGGTTGGATGGGGAGAAGAGCTCAATTGGTCTTGATAGTGTGAAGGTTAATCTGATAATGACA GATTATTCCATGCCTGGGATGACAGGGTACGAACTGTTGAAAAAAATAAAGCAGGAGTCATCTGTTTTCAGAGAGATTCC AGTGGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGATTTTCTATTGA AGCCTGTAAAGTTGTCAGATGTTAAACGCCTAACAGATTTCATCATGAGAGGTGGAGAGAAGAAGGTTGAACAAAGATGT CAAAAAAGAAGCAGATCAGATGATTGCAGCTCATCTTTATCAACTGCATTCTCATTGGTTTCTCATCCATGCGATCTATC ATCATCACCTGTTCTATCAACACTTTCACCATCTGCAATGTCATCAAAGAAATCTAGACTATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0184700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTAGDVLRQSLPAMDAGELHVLAVDDSHVDRKVIERLLRISSCKVTVVDSGTRALQYLGLDGEKSSIGLDSVKVNLIMT DYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEDFLLKPVKLSDVKRLTDFIMRGGEKKVEQRC QKRSRSDDCSSSLSTAFSLVSHPCDLSSSPVLSTLSPSAMSSKKSRL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43874 View details on PTHR43874 Search for proteins/transripts with this domain View external data on PTHR43874	15	207	193	8.8E-96	–
PANTHER	PTHR43874:SF89 View details on PTHR43874:SF89 Search for proteins/transripts with this domain View external data on PTHR43874:SF89	15	207	193	8.8E-96	–
SUPERFAMILY	SSF52172 View details on SSF52172 Search for proteins/transripts with this domain View external data on SSF52172	19	152	134	1.85E-27	IPR011006 Show description in modal box View details on IPR011006 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00448 View details on SM00448 Search for proteins/transripts with this domain View external data on SM00448	20	145	126	2.1E-20	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.2300 View details on G3DSA:3.40.50.2300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2300	21	174	154	3.2E-30	–
ProSiteProfiles	PS50110 View details on PS50110 Search for proteins/transripts with this domain View external data on PS50110	21	149	129	32.489	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00072 View details on PF00072 Search for proteins/transripts with this domain View external data on PF00072	22	142	121	2.6E-21	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00156 View details on cd00156 Search for proteins/transripts with this domain View external data on cd00156	23	142	120	1.02838E-22	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	186	207	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000160 View details of GO:0000160 AmiGO InterPro QuickGO	Biological process	Phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.	Subterm of View details of GO:0035556

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0184700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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