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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0188400 |
| Transcript ID | LotjaGi1g1v0188400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT5G61120.1 zinc ion-binding protein; Swiss-Prot: sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A; TrEMBL-Plants: tr|K7KKJ1|K7KKJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0188400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36936124..36943548) extracted from Lotus japonicus Gifu genome v1.2.
AACAACGTTGTCATTTTCTCTCATTTTCTTTCTTTCTCTCTCCAGAAAGAAAACTTGCCGAGAAAGTTTCACTCTCACTG AGTGTGAATCGTCTTCATCACTCTTCACTACTCAGCTCACTGTGTTCAATTTCATCGTCTTCTCTTCCTTCCTCGCACTC ACACTCACAATGCAGCAGCAACCGGGCCAGGTTCACAATGTGAAACTTTTTTTTTTTTTTTAGATTCATTTCTGGGTCTA TTTCTTGATTCCATTTTTCGTTGCAAGTTTCAGTTTTTTTAAATGGGTGGTGGATAAAAATTTTATTTTGTTTTCTTATT ACTATTTCTCACTCTTACTTGGGTACTTTGTGGTGTTTGTTTGCATTTTTGTTGTTGTTGTTGTTGGTGTGTGTGTTGCC ATGAACTTGATTTCTTCTTCATGGTGAAATGGAACCGGTAGGGTTTGCTTTTGTGCTCTCATTTTCCCTAATTTGTTTGA ACAGTGAAAAGCTCTTATTTCTAAATTGATTTTGGAGAATGTTTTGTCTCTAATTTGTTAATGGTTTAGTTAAATAAATG CAATAGTCAATGTAATAAGAAGCTTGCATTTCACAAGGGTTTTGTTTGTGTTAAGGGTGTGTTTGGACACCATTTCTTTT ATAAGTGTGCTAATGTCAGTTTGCCTTTGTAGCCTTTGTGCCTGTTGGTGAGTGTTCATTTTTGTACTGCATGTTCTTAT TTGTCTGTACAGGGAGCAAGATAATATTGGCTATAATTTTATTGATTACTATACCATGTTCTCACTTATTATTCTCAAGT AGAATAAAGTGTGGAGTTCAAAGGTTAAACTGTACTATGAAAGTTGAAAAATAATTTTAACAAATTACTTAGTAGTACAT TTCTTTTGCTATGTGTTTTCTTTTATGTAGACAGATTAACAGGAAAGGAGTTAGTTAGTATTAAAATTGCTTCTTGATTT GGGCATTAATGGGTGTGACACATGCATTAATTACTAAGCTTCTACTTGTAAGTCATACATGCACCGAGCTTGTTGAGCAT ATAGCTGACCTGATGTTGGGACTTGGTGAAAATATTTATCAGTTGGTCCTTTGAATTTGCTAATGCTGATGCTGTAGCAA TTTCTTCAAAGTTGGATTTTCTAAGTGACTACTAACAAGCAATCACAATGCAATTTTTCTTTCATGTTGGATTAGATTTG AAATTATGTTTGAAGATTCTTGGTTATCACATATGAACTATGAGCATATAGCTGACCTGATGTTGGGACTTGGTGAAAAT ATTTATCAGTTGGTCCTTTGAATTTGCTAATGCTGATGCTGTAGCAATTTCTTCAAAGTTGGATTTTCTAAGTGACTACT AACAAGCAATCACAATGCAATTTTTCTTTCATGTTGGATTAGATTTGAAATTATGTTTGAAGATTCTTGGTTATCACATA TGAACTATGCTGGTTATAGTTCATAGATGGTCAGCCCTTAAAGCAACCATCCTAACCATATGAGAGAGGGGTTCACATGC CGTAGTTCCAATTTCTTGATGCTTAGCCTCCACACTTGACTTAGGAACATAGTTGCTCTTTTATGGAAGCTTACTGTGAA AGCTTTTGAAAAAAATAAATTATTTTCCGTATTTTAAGTGTTTCCAAATGAGCATTTAAGTTTCATCCAAAGGAATTCAG TATCTTGAAATTGAATGTCTGTATGAAGGAGAGACTTCCCAATTAGCGTTGCATAACCATAACTCTGCATATGTTCGTTA TGTTTATGGAGTAAGACTTCTCTTGAGGCTTATCAAGTAAATGACTTAATTATTGATTGGTAACCTGTGGGTCAGTTAGT CAGTAGATAGTTTGAAGGAATTGGTTCAAGAGTGATAGAGGAATATTATAAATGAGAGAGTTAGAGTATATGATCATTTT GGGGATCACTGTAATTGGTAATTGGGTGAGTCCAGGTTCTCTCGAATAACCTGGAAATTGTTATCATTCTTCTATCAACT GTTCACACACAATAAGGGAGATATATGGTCTTGATATTGTGAGATTATTCAAGATTTGGTATGAGCTCCCTATGTCTTTA TAGAAGCTTGATATTTGGGTTAATAGCCTTATCTTTTGATCTGAATCTTTGCATTTGAACTTGGTTCAACTCACATGCCA CCACCATTCCAATGAAACTTTCACTGTTGCCCAATTCCTTGGTTTTAAACTTACTTTTCTCACACTTGAAGGATTGGATG GTTTCAAGATTTCGTGTTAAAAATTTCAAGAAAAGTTAGCTCTTCTTTTTACTTGATGTTTACGTGTTCATTATTACCTG CAGGTTGAACCTTGCAATATATGTGGCGACATTGGTTATGCTGAAGTAATTGTTGTTTGTTCCAAATGCAATGTAACTCG TGAACATGGGTAATTATCTCCCTTTTATTTTCTCTTATGTTATTTCTTTTTACGCATTTGATTCTTCTAAATAATAGCTT TTTGGTTTATTGCCATGACGAAACCTCATCAATACTAAAAATTCATGGCAAGTTACATATGTACTTGTCTATTTGGATTT ATATAGTTTTGCTTTGAACCTTGAGCACTCAATTCTGGGGGACTTTTTGTTTCTAAACCTGATATGATATGTGCATTTTC TACGAATGGGCTCACCTTGAAGAACATAATTGGTAGGATTAAAGAACGATTAAAAACAAATGTTAATTTGCAATTTTATT TTCACGCTTAATTTTATACATTTTCTCATGACCTTCCTTTATTTGCTTTGGCTCTTGATGAATGGTTTTGCTACACCACT TTGCAGTACTAATGCTGCACAGAATCTTGTTCTGAATCTGTGCAATTTCTGTCCATTTACAGTTATTGTATGCGGATTTG TCTCACCGATATTCCTGACGACTGGTGTTGTGAAACTTGCCAAGCCAAAAATGGTACAACTTCACCATGTAAAGTTGACC AGAATTTCAGCCCTCAGGCCCCTAAAAGGCAACGAGATGTTAAAGCAGGAAAAGTGAAGTTCCTTCCTGAGGATGAAGTA ATTAAACTTAGCTCCGGTAATTTTCCAGCAAAACCTATTCGAGGAAGTTCTAGTTTTAATATAGCCAGGAAGGCCCCTGT TGCATCTAAAACTGTCGTTTCAAAGATTCCCTCTCGCACATCACCATCACCAATGGTACTTGGTAAGCTTCCAATAAGTG GAGCACAGAGAAATCAAATGACTGATAAGCATGCTTCTCAGTCATTATCAAAAGGTGAGAATTTCTCTTCATCTTTGCTG CAATGCAATTTCTTTGGTGCCCTTCAAACAGAAAACATCCGTACCTCAACCTGTTGTTACAAACATGAGTTCCTCCTGAC ATATATATGATGCTTGGGTTTAAAAGCTCAAATTTATTGCATTTGTCTGGGTTTTAAGCTAATGGAATAAAATTTTGTGC TTGCTGATCTCAGTCAAGATAGAGCTTTCTAGTGTCTGTCACTGCTTGGATATATGTATGATCTAGCTCAACAGAAATTG AGTTTAATAACTTTACTATTTTTTTTAGAAAAAGTTTATTCATATAGTGTGCTGGATTTAATTTCCAACCACTAACATTG AACCACGTGTGATGGGAGATAAAAGTGAAATTTTTTTAACTGGAGACTAAATTTGTCTGGATTTTAAGCTGATTTGATCG AATTAAATTTTGATCCCAGTCTCTTAGTGACGTGTCATTGTTTGGCTATTTGTATGATCTACCTCAACAGAAATTATTTA ATAGCTTCCCTAGATTTTTACAAAAATTCCCAAATTTGAGCTGGATTTCGTTTTCATCCATTGTATTATACTGTCAGTGG TATTGAATCATATATGATGAGACTCTAGTGAGCAAACCATCCAGTGCTATAGAGCTTCTGTATGGCAGGGTTCATTTGGA TGGTGGGACCCATCGAGGGTCTGTTACATATGGAGCTTTATCTTGTGGTTGCTAAAGGTTGGTTTTACGATTCAAACCTA TGACCTCCTAATCACATGACAGCAACCCCGACCATTGTGCCAAGGCTCCCCCTTCTGACTGAGATACTAGTTTTGAAAAT GTATATATGAAGTGTTTATTTTGCAAGTTTTCCATAAGATTTTATTTTTAATTGTGAGATATGGTTTTTATAGGACCAAC AAAAGAGCGTAAACATTTATCTAAGCTACAAGTGGGATTCATACCTGATAGAAAAGTTAAGACTCTTGATCTTCAAATAC AAAAGCCTACAAAAGAGGCACCATGTGAAGATTTATCGGCAAGAAAATCACTACCTATCGGTTGTTCAGGTTGGATATTT TTCTTGCTATGATTCAGTTCTTTGTTTGTCTGTTGCTTTCTTCTGTTGATTGTTGCATTTACTCAAGTTCTAACATCTCA ATATGCATATGTTTACATGTATCTTTGTACTTAATGTGATATTAGTACTCACTTCAGCCTGTGAGTTGTGAACCTATTGT GATTTATTTTTTTCGTTCTACTCTCTGTTTTGTCTTTAGGTGATATCTTTGGTGCTGTTGCTGAATATGACAGATCAAAT ATTGGAAAAAGTGATATTCTGAGTATTCAGGAAAACTTCAACCTTCATTATAAAAGTCTTCCCTCTTTAAGTCCTACTTG GAGGTGTGTACTCCTCTTCCCTTGTCATGAATAACTTCCATCTTGAATTCCCTTTGCTGGCAAATGCTAAGCAAATTCTA ATCTGTAGTGAATAGTGAAATGCAACTTCACATTTCATTTTAGTTAATTTACCTATTACTAATTAGGATGACAATTTTCT TACAGTCTCAGAAAATGGCTGTGAACATGGGTTCATGTAAACCATTTTAAGTTTACATGCATATACTTTTGACCGATCTT TTCTATGATTTTTGAATTTATGTTTTGAGAAGGATTTTGATCCCTTCATTTACACTGGTAGATATAAATCCCTCATGACT TGTTCAGACGTGGTGGGATTTAAATACAAGCTATCACAATCATAAAACTTGGATGATTATTTTTGTTAAAATAACAGTTA GTGAGAAAGTGGATTAAATTATATGTAGGTCCATATGGTTTCACTAATTTTTCAAATAGGTTCCAACCTTCTAATTTTTT CAAGCAAGTTCCTCATTCTTAATGGCATTGAGATTCAGTCAACAATCCCTATTCCATTCGGACTATTTTAAAAAACTGAA AAAAACCATAGGGGCCTATTGAATTGTGTCTTCTGTCAATTAGACCCATATAGTTCGTTTAATTTGTCAATAATCCTATA GTTAGCATAGTTTTTTTTTAGAAAGTAAAAGGGTGTATTAATCACAGCTTTGAAAACAAAGCTAAAAGGGAGACAAAGTA GGCTAGGGTGATTAGTAACAACAAAAAGCTAATCACCCACAGCTAATCCTTATAGTTAGCTTAGTTAAATGGAATCTCAT GGCTGTTGGCCTGTAGGTAGGGAGGGACCCATTCAAGTATATTTATAAAAAAGTCATTGAGGCAAATTCCTATTTTGTAT GAAACAACTTATTGCTGCATTATAGAAGCTTTTGGTTTTTCTGTGGAGTAATGACCCTCAATCAGATTTTATCCTCCCAG ATCCTTAATAGGCTCTATGGTGAACTTATATGGACCATTTTCCTCTTTGTTACTAGTAGTTGGAATTAATTATCATTTAC AATTTTTTCCTTTTGAAACTGAATTTATTATTTATTATTGAATTGAAACTTACTTGTCGCTCAAGAACAGTTTCAGTCAG GAGATCATGGCAAGACCTTGTTTAGTTTTTTCATTGTCAAAATAAAAAGCAATTCTCATTGATTCTTTTTTTCTGGTATC CATTCTTTACATTTACTGAGCAATATCTGAGAATAGAGGGTGTTATACCTATGGCATGTAAGTGTGAATCACATGGGTTG TTTGGGTGGTGAGTTTCAGAGGGAAAGGAAAAAGGAGGTAAAAATTTATTTTCAAATAAATATGCTCTAACTGATAATTT ATTAACATAGAAAGAATGCAATGATAAATTTTTATTCAAGTTAATACTTTAATCATTTGTTCATTTTTATAAACAACCAT GACACCTCAGATGCTATGCATTTAGTTCCATGAAATTCAGTCTGATTAACTTGAAATTTCGTATGCTGGTGGCCATTTAC TAGGGGTCAATTCAAAATTCTTCAGGCAGCTGCATCGGGTGAATTTTATGACGTGTTTGAGGCCTACCCTCCATGCTACG TCAGCAGGAATGCATACAAACTATCAAATGGAATGCCCTCAGTCCTTCAACTGGAACCACTTCCTGCGTTGAATATCTTG GCTGATGTATTCCAGAATGATTCTCCCTGTCTCGAAGATATTGCAGTGTATTTCTTTCCAACAGATTCTGCGAGGTCTGT TTTTGCTTATTGATACTCTTACTTTCTTTCTCCCTTCCTTTTATGAGGCCATTATTTGTTTTTTAACCTACTTATATCTC ATGTTCTCAATTGAATATAGGTCAATAGAGAACTTACATAGTGTCTTTGAGTTTATGAATGCTGAACAATCATTGTTGAG AACTTCTATAGATGGAGTGGAGCTCTTGGTTTTTACCTCAAGTCAGCTTGATAAGGACTCAAAGGGTACGTTTATTGTTT TCATGCATTAGCTCCGCTCTAAACATTCATAACATCCTGAACTCCAATCCCTATTCATGAAAGTTGTATACCAAAATTCA AATTTGGGAGAACAGGACAACAGGTTCAAAAGATCCCAACTTGCTTATATTCTTTTGTTCTTGGAACTTGTACTTTGTTA AATTTGCTGATTATCTGCATCAATCAGCATTTACTGTTGCTTTTTGTGTCTTGACAAAGATGACAAAAATGTGTTTATTG GTACTATATATTGCTGCAGTAACTGAAGGATATTTCCTATGGGGAGTCTTTCGCCATAAAAAAATCAATGAAGCTGATGA AAGATTATTACTTAAGATGGAGCCTGATGATATGGATATGGATATCGATATGATTGGAGGAAAGGAGCTAGTTGGAATGA TTGATTGGGTTCGAGAGAAACCAAGGAGTACCATGGACAAACTGGATGTTCCGCCAGGCTTTGAAAGAAAATTTATGTAA GAAGTTTTCATTGTAAAACTTCAGTCAGTGAAGTAAATAGCGAAAGATAGTGTCTAACAGCTCAATTTTTTGGAGACTCC CTTGACGTAGAAGTGTACAAACTTGGAAATATGGGCTTAACAAATTGAATTAGAATATGTTTGATTGGTATTGGTATGTA CTAAAATGGTCAGAAATTATAGGTATCTTATGTACAGCTGATGAACACTTAATTATGACTAGGATGTAGAATTCCCTTTG GATATATCAGAAAAAGAATTGAATATGTTCATGCTTATAAGCTTATTTTCTCCCTTTCTTTTAAT
CDS sequence (LotjaGi1g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGCAACCGGGCCAGGTTGAACCTTGCAATATATGTGGCGACATTGGTTATGCTGAAGTAATTGTTGTTTGTTC CAAATGCAATGTAACTCGTGAACATGGTTATTGTATGCGGATTTGTCTCACCGATATTCCTGACGACTGGTGTTGTGAAA CTTGCCAAGCCAAAAATGGTACAACTTCACCATGTAAAGTTGACCAGAATTTCAGCCCTCAGGCCCCTAAAAGGCAACGA GATGTTAAAGCAGGAAAAGTGAAGTTCCTTCCTGAGGATGAAGTAATTAAACTTAGCTCCGGTAATTTTCCAGCAAAACC TATTCGAGGAAGTTCTAGTTTTAATATAGCCAGGAAGGCCCCTGTTGCATCTAAAACTGTCGTTTCAAAGATTCCCTCTC GCACATCACCATCACCAATGGTACTTGGTAAGCTTCCAATAAGTGGAGCACAGAGAAATCAAATGACTGATAAGCATGCT TCTCAGTCATTATCAAAAGGACCAACAAAAGAGCGTAAACATTTATCTAAGCTACAAGTGGGATTCATACCTGATAGAAA AGTTAAGACTCTTGATCTTCAAATACAAAAGCCTACAAAAGAGGCACCATGTGAAGATTTATCGGCAAGAAAATCACTAC CTATCGGTTGTTCAGGTGATATCTTTGGTGCTGTTGCTGAATATGACAGATCAAATATTGGAAAAAGTGATATTCTGAGT ATTCAGGAAAACTTCAACCTTCATTATAAAAGTCTTCCCTCTTTAAGTCCTACTTGGAGGGGTCAATTCAAAATTCTTCA GGCAGCTGCATCGGGTGAATTTTATGACGTGTTTGAGGCCTACCCTCCATGCTACGTCAGCAGGAATGCATACAAACTAT CAAATGGAATGCCCTCAGTCCTTCAACTGGAACCACTTCCTGCGTTGAATATCTTGGCTGATGTATTCCAGAATGATTCT CCCTGTCTCGAAGATATTGCAGTGTATTTCTTTCCAACAGATTCTGCGAGGTCAATAGAGAACTTACATAGTGTCTTTGA GTTTATGAATGCTGAACAATCATTGTTGAGAACTTCTATAGATGGAGTGGAGCTCTTGGTTTTTACCTCAAGTCAGCTTG ATAAGGACTCAAAGGTAACTGAAGGATATTTCCTATGGGGAGTCTTTCGCCATAAAAAAATCAATGAAGCTGATGAAAGA TTATTACTTAAGATGGAGCCTGATGATATGGATATGGATATCGATATGATTGGAGGAAAGGAGCTAGTTGGAATGATTGA TTGGGTTCGAGAGAAACCAAGGAGTACCATGGACAAACTGGATGTTCCGCCAGGCTTTGAAAGAAAATTTATGTAA
Protein sequence (LotjaGi1g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQQPGQVEPCNICGDIGYAEVIVVCSKCNVTREHGYCMRICLTDIPDDWCCETCQAKNGTTSPCKVDQNFSPQAPKRQR DVKAGKVKFLPEDEVIKLSSGNFPAKPIRGSSSFNIARKAPVASKTVVSKIPSRTSPSPMVLGKLPISGAQRNQMTDKHA SQSLSKGPTKERKHLSKLQVGFIPDRKVKTLDLQIQKPTKEAPCEDLSARKSLPIGCSGDIFGAVAEYDRSNIGKSDILS IQENFNLHYKSLPSLSPTWRGQFKILQAAASGEFYDVFEAYPPCYVSRNAYKLSNGMPSVLQLEPLPALNILADVFQNDS PCLEDIAVYFFPTDSARSIENLHSVFEFMNAEQSLLRTSIDGVELLVFTSSQLDKDSKVTEGYFLWGVFRHKKINEADER LLLKMEPDDMDMDIDMIGGKELVGMIDWVREKPRSTMDKLDVPPGFERKFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 79 | 79 | 7.4E-7 | ||
| PANTHER | 4 | 450 | 447 | 7.3E-121 | – | |
| PANTHER | 4 | 450 | 447 | 7.3E-121 | – | |
| SUPERFAMILY | 5 | 60 | 56 | 3.1E-6 | ||
| MobiDBLite | 150 | 171 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0188400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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