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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0190000 |
| Transcript ID | LotjaGi1g1v0190000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A072UT65|A0A072UT65_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0190000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37270084..37274103) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAGGAATTGGTGCCCCACTCCCAAAAAAAAAAAATTAAAAACAGAAAAAAAGAGCGGCAATCAGGTTTTTTTTCCG ATGGTCGTTGCATCTTCTTCAGTCATGTAAGCGCTCGGTGCAGCCACAATCACAAATGGCGTCAGGTGGCGACACCAACG ACGGCGGAACCCTAACACCGCCACCTTCACTCCCTTCCTCTTCCAATCCTCCCGGAAACTCAGCTCTTATCCAGTCGGAT ATGCCTTTGATTCCTACGCAGCCACGCGGTTAGAGTACCCTCCCAACTATACTGTCCACTCTTCTGTTATCTTTAGCTCT TGTGATGGCATTCTCTGTTCGTACTGCTTCGGAAGCCGTATCGTTCAGGCATGGAACCCTTGGACTAGGACCTTTGTGAA ATCGCCGCCATTGGAAAATATTAAGCCAGGGTATTCTGTAATTGAGACGTCGTTAGGGTTCGGTTACGATCGTCTCACTG AAAGTTATAAGGCGGTTAAGATGATTTTTGACGCTGATCATGGTCTCAAAACTCGAGTGATGATTCATACGTTTGGTACC AGTTTTTGGAGAAGGATGGAGGTGGATTTTTGCCCCGTTGATAAAACAGGAACATTTGCTTATGGAACAATTTACTGGAT AGCTTCTGTGGTTTGGGATTCGAAGAAGCGGTTTATTGTTTGTCTTGATGTGGGGAAGGAGTCCTTTCAGGAACTTCGGC TGCCTAAATTAGATGACCTAAACCTCACATTGGGAGTGTTGCGAGATTGCTTGTGCGTTGTTTCTCATGAGCAGTTGTTT TGGGATATTTGGGTCATTAAGGAGCATGGAAAGTGTTGGACTAAATTATTCAGTATTCCTGAGGATTGTAGCTGTTTTCC GCTTAACCAGCCTCATTATATTTCTGAGGATAAGGAAGAATTACTACCACTGTCTTCCTTTCGGGGTTTAGTTGTTTATA GGCGTGCAACTCCTACGGACAAAGTTACTCGGATTTTTTATATTGAAAACATCAAAGCTTGGATTCTCCCAGAGATGTCC TACTCCTATGAGCCAGTTGTCTACACAGAGAGTTTGATATCACCCTGTCCTCAATATTAGGAGGTAGATTTTCTGATATT CCTTTGGATGGATCTCTATTAATTAATATTAGATGTAATATCCATCTTCTAGTTTAAAGTACTAAGGTTTCATAGTAGTT TTATGTAAGGCTTCTTTGGAGGTTAGGCCAGGAACTCTTTAAAAGCTTATCTACTAGAACTACTTTTTAATTAAAAGTAA TGTTTGTATAAATGTAATTGAAGAACTTTTAACTTTTGAAACCAACTTATTAGAAAGCTAATCCAAACCGCTTCTCATCT TTGGTTTTTTTGGGAAACTGTTACTGAATTATCAGGTTGACAAAACTACCACTGTAAACCCTAGCAGTTTCGATCCATTG TTTTCTGTGTTACCATTTTCTGTTTGCATCACTGTTGTCCAATTCATTGGTTGTGTCTTCGTTGCTGGAGGTTATGTATA GTTGTCGTCAGAATCCCCTTAAATGTCTTCACCATTTGTGTGCATTCTTCTGATCTTATCCTTCCACTTCTGTTGCTACT CTGCATCATCTATGGTCAACATATTCAAGAATTTGTGATTCCTTTTTCAGATTTATTTTTTCTTGTTTGAGAAGCTTAAA TTGAAGGTATAGATTTGTTCCTTTCTTGTATTCAAATCTACTTTTTCCGCTATTTTTTTGTTTTGTTTATAATTCTGATT CTGATTGGCGGTGATGGTTCATTTGGGTATGTGATTAGCTTCGTTTTCTATTTATTCTGTTTGTACATTTTCACTTTCAT CATAATAATGTGATTATTTAAATTATTGGTGCTTTTGGGCCAAATGTGGCACCAATGTTTCTGAATTCCAATCAATTTGA TTTGCATGTGTTTCTTGCATTGTACTACTTAAGGCATCATATGGAGTTTTTGAAAATAATCAAGTTATTATGCTAGAATG TGCTGGGGGAGCTTGTTTTGTGAGTTCATCTGAGGCATTCATGCTCTAGTTTTTGTTATCGGTATAAAGTATTATTCGAC TTTTTTAATTGAGTATTGTATTGTGTAAGAACTTGCTAAAACCAAGGGATGTGGGAAGTCTCGTGTTCTTATATCCTTGC CATTTCCAGTCTTGGAGCTCTCCTAAGGGTGTGCAAGCTTGCTTAACTTGTGGCTTTTGAGGGCCTCACAAAGTCGAGCT GAGGCTAAAACTAATCAATGACTACAATAAGTAATTCAGGGAGCTGAATTCTAGTTTAGATTCAGTACAAAGTTTAACGG ATCTGGTTTAGGTGGCTGTTTATCCAGTATTCTCTTGCTTAGCTCACCCAACATATATCACATGCCTTGTTCCTGGTGTC AAGATTTCATAAGAATGTATTTTTGTTCTGAAATTTAAGAATGTTACACTTCCCAGTTCCCACTCACACAAACACATTCA CAGGACCTCCAAGCCTTATGTTTATTTTATTTTATAGTATCTACTCTTTATAATATCACAATTTGGTTATCCTTTTCCTT GAAGTCTCTATTTTGATTGTTCAAATTAGTGTCTATATGGATGGGGGAAGCCTAGAAGGAACTGGTCAGGAATGGATCTG TGCTTGAGTTTGCTTTGGATTTACAAATGAATGTTATTGAACAGTATTTCTCTCGCATGATCGAGTTCCAGATTGGTGTT TTTATGTTGAGGTGAAAATTTAATTTGGTCTATTTATTAATGTGGGCCTCTCTTCTCTAGTTATGATAATCTTTGAAGAT GAGGTTTGCAAGTTAATTTTTTTTTGTCTTGCTTCCAACTTGCTAGATAGAGACACTTCTTCCCTTTGTCCTTTTGGTAG AGTTTCTTTTTATTTTTTTGTTTTCAAATTTTAGAGTGCATTGTCCATATTACAAGAGATTCCTAAAATGTTGAAAGACT CACCATCTTTAAAATTCTTGGTTTTCCAAACCCAGAAACTAGAGGGTCTATGATTATATCATTCGGATTTCCTTTCTTAA TTCTTATGCCTAGATCAAAAGTATTCTCCACAAGAGGCAATCTTGCTTGAGGCAGGTATGGCTATTATTGGTTGCAAAAC TCTGCTTCTGATTATTTAACACACTGCATACCCAGGTTTGAACAAGGGACATCTGGTTAAGCTGGTTGGTTCAACTCCTC ACCAACTGATCAACATATTCAGTTGTATTTGGACTTTGGATTACCTTGATGAAATGCTATTATTTATCTAACCATTGTGT TATTCCCATCTATATTGATATAAAAGCTAAAAAAATATGCTTTTAAGTTTTAATATAACTTAAAAAAAAAGTTTTAATAT AGAATAGCATTGGAATATGAAGTATTGGCCCTAAACAATCATCTTTATCCTTTTACCTACCATTGTTTAGCTAGACCTAT ACAATTGTGTTTATGAGGAAAAACAAGACATAAAGGATCACTGGCTTTCAGGTTGTTTATTTAAGCTACTCTGTTTTTTT TGTTTGTAGGGTTTCCTTTCTCTGCCACACTATGTGATATAGTAATTATTAATCTTATATGATTATATAAAATTGCTACA CAGCTGGAAATTATTGTTGAGCAATCAGGAGCAAGAACAATTGGCAAAAGAACAAACTTGCCTTGCATCACTGATGATGT CTGGAAAGCAAGACTTGGAAGAGAAACGTTGCATCTGGATGACCATGTGAGAAAACTATTGAGGTTCTTATTGGGAGTGG AAAACTGATTCTATGCCATGCCTTTTTTGATACTTTTACTCTTAAGTTTAGTGTCCTATGTTTAAAATATTTTATGGGTT ACTCCACAAATGCATTTAAAAGCTGACAGTGTACCTTTCTAAAATAATTTTGCTTGACATTGTAGGAGACCAAGTGGAAG AGAAACGTTGCACACATATTAAGAATGCAATAAATTTTGTTAACTTTTTAAAACATTATATGTATTTTCCTATTTTACCC TTTAAAATGCATTATTATCT
CDS sequence (LotjaGi1g1v0190000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTTGACGCTGATCATGGTCTCAAAACTCGAGTGATGATTCATACGTTTGGTACCAGTTTTTGGAGAAGGATGGA GGTGGATTTTTGCCCCGTTGATAAAACAGGAACATTTGCTTATGGAACAATTTACTGGATAGCTTCTGTGGTTTGGGATT CGAAGAAGCGGTTTATTGTTTGTCTTGATGTGGGGAAGGAGTCCTTTCAGGAACTTCGGCTGCCTAAATTAGATGACCTA AACCTCACATTGGGAGTGTTGCGAGATTGCTTGTGCGTTGTTTCTCATGAGCAGTTGTTTTGGGATATTTGGGTCATTAA GGAGCATGGAAAGTGTTGGACTAAATTATTCAGTATTCCTGAGGATTGTAGCTGTTTTCCGCTTAACCAGCCTCATTATA TTTCTGAGGATAAGGAAGAATTACTACCACTGTCTTCCTTTCGGGGTTTAGTTGTTTATAGGCGTGCAACTCCTACGGAC AAAGTTACTCGGATTTTTTATATTGAAAACATCAAAGCTTGGATTCTCCCAGAGATGTCCTACTCCTATGAGCCAGTTGT CTACACAGAGAGTTTGATATCACCCTGTCCTCAATATTAG
Protein sequence (LotjaGi1g1v0190000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFDADHGLKTRVMIHTFGTSFWRRMEVDFCPVDKTGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQELRLPKLDDL NLTLGVLRDCLCVVSHEQLFWDIWVIKEHGKCWTKLFSIPEDCSCFPLNQPHYISEDKEELLPLSSFRGLVVYRRATPTD KVTRIFYIENIKAWILPEMSYSYEPVVYTESLISPCPQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 161 | 155 | 8.0E-18 | – | |
| PANTHER | 7 | 161 | 155 | 8.0E-18 | – | |
| TIGRFAM | 10 | 146 | 137 | 2.9E-18 | ||
| Pfam | 42 | 135 | 94 | 1.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0190000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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