Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0199500 |
| Transcript ID | LotjaGi1g1v0199500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SPX domain-containing family protein; TAIR: AT5G20150.1 SPX domain-containing protein 1; Swiss-Prot: sp|Q8LBH4|SPX1_ARATH SPX domain-containing protein 1; TrEMBL-Plants: tr|A0A0U1SH93|A0A0U1SH93_SOYBN SPX domain-containing protein 3; Found in the gene: LotjaGi1g1v0199500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:42200924..42203177) extracted from Lotus japonicus Gifu genome v1.2.
TGCCCCGCGAATATTCGCTTCCTTACCGTTATTTTTATACATATATATTTCACTGCCATCCACACCCTTGATTCTCCTCC TCCTCTTGTTCAATATTCTTCACATTCTCGTCAAGTTTTTGAGTTTAGCGTGCGTTACATTTTCAATTTTCAATTTCAAT TGGTGGTTAACGGAAGGAAGCGATGAAATTCGGAAAGAGCTTGAGCAACCAGATTGAGAAAACGCAGCCCCAATGGCGTG ACAAGTTCCTTTCGTACAAGGAACTCAAGAAGAAATTGAAACTTGTTGAGCCTGCAGCCACCGAGGAGGATCATCGCCCC GCCAAACGCCCCAGGAGGATCGATGAGGAAATGTCCAAGGAAGAGATCGAGTTCAGAAACTCCCTGGAAAATGAACTTCA CAAATTCAATGCCTTCTTCCTTGAGGAGGAGGAAGAGTGCATTATCAAATTGAAGGTAGTAGTAGGTTATTAAATTAATG GTAATTGTTTTTCGCACCTCTCTCGTTTAGTACCACCTCCTTTTAAGTGCGTTGCGTTAACATCGCACTTCCAAAAGGAG GTGAAACTAGATGAGGGGTGAGAATAACAATTACCTAATTGGGTTCTTATCAATTTTTATTTTTGATTGATTGATTGATA AATTAGGGTTAAAATTGGTTGGGGTTGAAATGTGCAGGAGTTGAAAGATAATGTGGCCAAAGTACAGGGTGGTTCTAATG AGCAATTGATGCAAATTCGCAAGGAAATTGTAGATTTCCACGGAGAGATGGTCTTGCTTGAAAATTACAGCGCCCTTAAC TACACAGGTAACATTTTAACTAAATAGTACTGAAACTCTAGTGATCAGAAATGGATTCATTTCCCATATGATTCTGAAAA ATTCTCTGGGTAACTAGATTAAATGATGAGTATGATTGTGTTGTAAAGGGGCTTTTACTTGTTGAAATATTTGTGTTTGT TTTGTATTATTGAATATTCAGCCCTTTCAATATCTAAAGTAGGCTAGCATATATTTCTTCAATCTACTTTAGATTTAGAT TAGTAAGCAAGCCTATTCCAATATAAGGTTTCATTAGAGGAGTATTATTTTGAATTATGCTGATAAGTTCCAAAATTATT CCCCTGTTGCTGGGTCTGCAAAAGGCAATACAGTGGAACAGAGTATTTTTGTTATTTTATTTGAAAGCCTATTTAGGCAT ATAAACCAAATGTTATGTCAAGGATTCAAACAATACTCTATGATTTAATGGTGTGTTCAGTTATGTTTGAGAAGTCTCAC CAAATAAATGTTTGTTTATAATAGGTAGAACAGTTCCGAACCTTAAGCTAGGTTTTGGGTAGAGTTTAGACTTCACTCAA ATTTTAAAAATTACATTGAAGAATGTGATACTTTAGATTATATTAAACAGCTCAATATATCTAATGTTCACTGCAAATTT TACCCAACAGGACTAGTGAAAATACTAAAGAAGTATGACAAGAGAACCGGTGCTCTCATTCGCCTTCCTTTCATTCAGAA GGTCCTGCAACAGCCTTTCTTTACCACTGACTTGCTCTACAAGCTTGTAAAGGAGTGTGAAACAATGCTTGACGACCTTT TTCCAGCTGGGAATGATCCTCCGGCGGCAGCGGCGGCTTTGGGTGAGGTAACTCTCCAAGATGAAGAAGGGTGTGATCCT TCAACTTCAAACAGTACAAAGACTGATGATGGTGTGAACCTGCCCATGGAGAGCCTCTATATGAAGAGCACCATATCAGC TTTGCATGTTTTGCAGGAAATTAGAAGTGGAAGCTCAACGGTTAGCATGTTTTCGTTGCCACCTCTGCAGATAAATGGTT TGGAAGAAACATGTGCTGGAACAAACAGCCAAGTAACCTGCTAGTTTTACTTGGTGCTAGATTTAGTGGGATGAGACGAT GAGTGTTACTTTTTTGTTCTCTTTTAAAAAAATCTAATGCCTCTGTCGTCATAGTATACTTCGTATACCTACACGGATGA AAGATTCTAAATGTAGTGAAAGTATTCATCTTGTGGAATTAAGGTTCCATTTCCATATGATAAAGGGCAAAATGCATAAT TGAACATATCTCCAACTAAAGGTGTTGAAATTACAAAGGGAAATATAAGAACAAGAAAAAATAACCAAATTAACTGAGGC TCATGCGCAGAAAATTGGAGTTTGAAGCTCACCAACAAACTTTATAAAGTAACTGAACACCACGTTTACTAACTCCTTGC ATATGAAGTAAAAC
CDS sequence (LotjaGi1g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTCGGAAAGAGCTTGAGCAACCAGATTGAGAAAACGCAGCCCCAATGGCGTGACAAGTTCCTTTCGTACAAGGA ACTCAAGAAGAAATTGAAACTTGTTGAGCCTGCAGCCACCGAGGAGGATCATCGCCCCGCCAAACGCCCCAGGAGGATCG ATGAGGAAATGTCCAAGGAAGAGATCGAGTTCAGAAACTCCCTGGAAAATGAACTTCACAAATTCAATGCCTTCTTCCTT GAGGAGGAGGAAGAGTGCATTATCAAATTGAAGGAGTTGAAAGATAATGTGGCCAAAGTACAGGGTGGTTCTAATGAGCA ATTGATGCAAATTCGCAAGGAAATTGTAGATTTCCACGGAGAGATGGTCTTGCTTGAAAATTACAGCGCCCTTAACTACA CAGGACTAGTGAAAATACTAAAGAAGTATGACAAGAGAACCGGTGCTCTCATTCGCCTTCCTTTCATTCAGAAGGTCCTG CAACAGCCTTTCTTTACCACTGACTTGCTCTACAAGCTTGTAAAGGAGTGTGAAACAATGCTTGACGACCTTTTTCCAGC TGGGAATGATCCTCCGGCGGCAGCGGCGGCTTTGGGTGAGGTAACTCTCCAAGATGAAGAAGGGTGTGATCCTTCAACTT CAAACAGTACAAAGACTGATGATGGTGTGAACCTGCCCATGGAGAGCCTCTATATGAAGAGCACCATATCAGCTTTGCAT GTTTTGCAGGAAATTAGAAGTGGAAGCTCAACGGTTAGCATGTTTTCGTTGCCACCTCTGCAGATAAATGGTTTGGAAGA AACATGTGCTGGAACAAACAGCCAAGTAACCTGCTAG
Protein sequence (LotjaGi1g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFGKSLSNQIEKTQPQWRDKFLSYKELKKKLKLVEPAATEEDHRPAKRPRRIDEEMSKEEIEFRNSLENELHKFNAFFL EEEEECIIKLKELKDNVAKVQGGSNEQLMQIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVL QQPFFTTDLLYKLVKECETMLDDLFPAGNDPPAAAAALGEVTLQDEEGCDPSTSNSTKTDDGVNLPMESLYMKSTISALH VLQEIRSGSSTVSMFSLPPLQINGLEETCAGTNSQVTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 269 | 269 | 1.6E-110 | – | |
| Pfam | 1 | 39 | 39 | 9.2E-9 | ||
| ProSiteProfiles | 1 | 157 | 157 | 26.554 | ||
| PANTHER | 1 | 269 | 269 | 1.6E-110 | ||
| CDD | 2 | 146 | 145 | 7.35449E-73 | – | |
| MobiDBLite | 36 | 55 | 20 | - | – | |
| Pfam | 110 | 159 | 50 | 3.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular response to phosphate starvation | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. |
Expression pattern of LotjaGi1g1v0199500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…