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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0203900 |
| Transcript ID | LotjaGi1g1v0203900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT3G24330.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q6NKW9|E138_ARATH Glucan endo-1,3-beta-glucosidase 8; TrEMBL-Plants: tr|A0A151RCM0|A0A151RCM0_CAJCA Glucan endo-1,3-beta-glucosidase 8; Found in the gene: LotjaGi1g1v0203900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:43828823..43831176) extracted from Lotus japonicus Gifu genome v1.2.
AAACCTTCTCCCTGAAGGCACTGAAAAGTGAAAAAACACACACACACTCGCACTAAGAAAGTGAGCTACTATTAAATTCA TCATACCTTACATTCATTCATTCATTCCCATTCCTTCCCGCCCTAAATTTTGGGATTCTCGAATCTTCTTCGCTAAGCCC ATTCGAAAATGGTGCCATTCCTCTCCTTCGCATTCTTCTTCTTCTTCACCATGGCATCGAGTGGCTATGCTTGGGTTGGC GTGAACTGGGGAACCATGGCGACTCACAAGCTTCCACCTGAGAAGGTGGTGAAGATGCTCAATCAAAATGGGATCCAAAA CCTCAAGCTGTTTGATGCTGATTACCGGATTATGGCTGCATTGATGGGGACTCAAATCCAGGTCATGGTTGCAATTCCCA ATATCATGTTGGATCAGATTAGTCACAGTCCTGAAATTGCTGATTCTTGGCTTTATGAAAATGTCACCAGTTATTTGTAC ACTGGTGGCGTCAATATCAAGTTGAGTATGTTAATTTATAGCAGCATTCTTGTTTTGCTTTCTAATTTTACTTTTGTTAT GTGCAATGTGATTGATTCTGTTATCCAATGTAGCCAGGGGAATAAATAGGAATAACATATTTAATTCTATTTTAAATGCT TCAGCTGGATATGCCTCTGCTGATTTTGGTAATTCAATTAAGCAATTAGAATAACATATCTTATTCTATTTTAATTTTGT ACTCTTCTTGGCATGTGTAATAGCTTTCATTGCTTTACTGTTCCTCAGTGTGCTGCATGATTATGCTTGATATGATATGA TATGCTAACTATGTATACATAGGGATGAACCCAGGTCTAGTAGAAATGGGGCGGCACAGAAGAGAAAAAAATATATCCCA TGTTCGCCAATTAGTCATTGTTGGTTTTCCTTTATGTGTTAAATTTTCGCCCCTTTTACCATTTTGGTTTCGTTGCTGAC TATGTATGCAGGTATATTGCGGTGGGTAATGAGCCTTTCCTTAAAGCATATAAGGGAAACTATCTCAATAAAACTCTGCC AGCTCTAAAGAACATACAGAAGTCAGTGGATAATGCTGGGCTGAGTTCAAAGATTAAGGTCACTGTTCCATTCAATGCTG ACATTTACTATTCACCAGACTCAAATCCAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTACGAGACCTCATCGTTGAA ATCATCCAGTTCTTGTATTCAAACAATGCACCTTTTGTTATCAACATCTACCCTTTCCTTAGTCTATATAGCAACGATCA CTTCCCATTGGATTTTGCATTTTTTGGTGGGAGCAAAATGCCACTCAGGGATGGTAATAACACACTCTACACAAATGTGT TTGATGCAAACCTTGATACCCTTCTGTGGGCTCTTGACAAGGCAGGGTATCCTGACATGAAGGTTATAGTTGGAGAAGTT GGTTGGCCAACTGATGGTGATAAGAATGCTAATGCCCTGAATGCAAAGAGTTTCAACCTGGGCTTGATTAAACATGTTCT GAGTGGCAAAGGCACCCCTAAAAGGAAAGGCATAATTGACTTGTATCTGTTTAGCCTCATTGATGAGAATGCCAAGAGTG TTGCTCCTGGGAACTTTGAGAGGCACTGGGGGATTTTTGAGTTTGATGGCAAGCCAAAGTATGAATTGGACATAACAGGT AAAAATAAGGAAAAGGGACTGATCCCTGTGGAAGGTATAAAGTACCTGGAAAAGAAATGGTGTATATTGGATCCAGATGC TACTGACTTGGATAATTTGGCTAATAGTATTGACTATGCTTGTAGCCAATCTGATTGTACTTCCCTTGGCTATGGCTCAA CTTGTAACAATCTAAGTGTCCAAGGGAATGCTTCTTATGCCTTCAATATGTACTATCAAGTGCATAATCAAAGGGATTGG GACTGTGAGTTCTCTGGCTTGGCTATCATAACAGATGAGGATCCATCAGAAAAGGATTGCCAATTCCCTGTGATGATCTC TCGTGGTTCTTCTTTTCTACTTCATGGAGGACATTCAGACATTCTAAAGAAAGCTGTGGAGGTTTTAATTTTTGTGGTGT TTTTGCTCTAGCTGACAGATTTAGGAAGGAATGCAGTACATAAAACGTGTTCGTCACAGATATAGTTTTTCTATTGATTA CCTTTAGGAACATGCTATGAACGTGTAAAGTTCTTTTCATTCTGTAAAGAATTCATGGACTCCAGCAGGACTTCAGCAAG ACAGTTTGGAACATTCCTGTTACATTTTTTTTAACTATAAATTGCTCTTCTTTCTGATCTCTCCTTATATATTTGTCACG CTAGATTTTGAATTTTGAAAACAATAATGTTGGT
CDS sequence (LotjaGi1g1v0203900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCCATTCCTCTCCTTCGCATTCTTCTTCTTCTTCACCATGGCATCGAGTGGCTATGCTTGGGTTGGCGTGAACTG GGGAACCATGGCGACTCACAAGCTTCCACCTGAGAAGGTGGTGAAGATGCTCAATCAAAATGGGATCCAAAACCTCAAGC TGTTTGATGCTGATTACCGGATTATGGCTGCATTGATGGGGACTCAAATCCAGGTCATGGTTGCAATTCCCAATATCATG TTGGATCAGATTAGTCACAGTCCTGAAATTGCTGATTCTTGGCTTTATGAAAATGTCACCAGTTATTTGTACACTGGTGG CGTCAATATCAAGTATATTGCGGTGGGTAATGAGCCTTTCCTTAAAGCATATAAGGGAAACTATCTCAATAAAACTCTGC CAGCTCTAAAGAACATACAGAAGTCAGTGGATAATGCTGGGCTGAGTTCAAAGATTAAGGTCACTGTTCCATTCAATGCT GACATTTACTATTCACCAGACTCAAATCCAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTACGAGACCTCATCGTTGA AATCATCCAGTTCTTGTATTCAAACAATGCACCTTTTGTTATCAACATCTACCCTTTCCTTAGTCTATATAGCAACGATC ACTTCCCATTGGATTTTGCATTTTTTGGTGGGAGCAAAATGCCACTCAGGGATGGTAATAACACACTCTACACAAATGTG TTTGATGCAAACCTTGATACCCTTCTGTGGGCTCTTGACAAGGCAGGGTATCCTGACATGAAGGTTATAGTTGGAGAAGT TGGTTGGCCAACTGATGGTGATAAGAATGCTAATGCCCTGAATGCAAAGAGTTTCAACCTGGGCTTGATTAAACATGTTC TGAGTGGCAAAGGCACCCCTAAAAGGAAAGGCATAATTGACTTGTATCTGTTTAGCCTCATTGATGAGAATGCCAAGAGT GTTGCTCCTGGGAACTTTGAGAGGCACTGGGGGATTTTTGAGTTTGATGGCAAGCCAAAGTATGAATTGGACATAACAGG TAAAAATAAGGAAAAGGGACTGATCCCTGTGGAAGGTATAAAGTACCTGGAAAAGAAATGGTGTATATTGGATCCAGATG CTACTGACTTGGATAATTTGGCTAATAGTATTGACTATGCTTGTAGCCAATCTGATTGTACTTCCCTTGGCTATGGCTCA ACTTGTAACAATCTAAGTGTCCAAGGGAATGCTTCTTATGCCTTCAATATGTACTATCAAGTGCATAATCAAAGGGATTG GGACTGTGAGTTCTCTGGCTTGGCTATCATAACAGATGAGGATCCATCAGAAAAGGATTGCCAATTCCCTGTGATGATCT CTCGTGGTTCTTCTTTTCTACTTCATGGAGGACATTCAGACATTCTAAAGAAAGCTGTGGAGGTTTTAATTTTTGTGGTG TTTTTGCTCTAG
Protein sequence (LotjaGi1g1v0203900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPFLSFAFFFFFTMASSGYAWVGVNWGTMATHKLPPEKVVKMLNQNGIQNLKLFDADYRIMAALMGTQIQVMVAIPNIM LDQISHSPEIADSWLYENVTSYLYTGGVNIKYIAVGNEPFLKAYKGNYLNKTLPALKNIQKSVDNAGLSSKIKVTVPFNA DIYYSPDSNPVPSAGDFRPEVRDLIVEIIQFLYSNNAPFVINIYPFLSLYSNDHFPLDFAFFGGSKMPLRDGNNTLYTNV FDANLDTLLWALDKAGYPDMKVIVGEVGWPTDGDKNANALNAKSFNLGLIKHVLSGKGTPKRKGIIDLYLFSLIDENAKS VAPGNFERHWGIFEFDGKPKYELDITGKNKEKGLIPVEGIKYLEKKWCILDPDATDLDNLANSIDYACSQSDCTSLGYGS TCNNLSVQGNASYAFNMYYQVHNQRDWDCEFSGLAIITDEDPSEKDCQFPVMISRGSSFLLHGGHSDILKKAVEVLIFVV FLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| PANTHER | 16 | 461 | 446 | 8.5E-247 | – | |
| PANTHER | 16 | 461 | 446 | 8.5E-247 | – | |
| Phobius | 22 | 483 | 462 | - | – | |
| Gene3D | 22 | 353 | 332 | 3.2E-117 | – | |
| Pfam | 23 | 344 | 322 | 1.5E-68 | ||
| SUPERFAMILY | 23 | 344 | 322 | 1.43E-79 | ||
| ProSitePatterns | 260 | 273 | 14 | - | ||
| Pfam | 366 | 435 | 70 | 6.8E-18 | ||
| SMART | 366 | 449 | 84 | 1.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0203900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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