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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0207300 |
| Transcript ID | LotjaGi1g1v0207300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT1G18520.1 tetraspanin11; Swiss-Prot: sp|Q9LPR6|TET11_ARATH Tetraspanin-11; TrEMBL-Plants: tr|A0A1J7HC73|A0A1J7HC73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0207300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45234037..45235966) extracted from Lotus japonicus Gifu genome v1.2.
CATGTTCTCTCAATCATTTAACCACTTGAAAAAACCACTATATTTCTTCTTCCTTCACTCATTTGAAACTTGAAACAAAC CAACATTAGCAAGATGTTCCGCATAAGCAACACCATGATTGGAGTCCTCAACATAGTGACCCTATTCGTCTCCCTCACCG CCATGGGCTGCTCCGCCTACATCCACCTCCACCGCACCGACGGCACCGACTGCCAGAAGGTGCTGCAGTACCCTCTCCTA TTCGGCGGCCTCTTCATCTTCGTCGTCTCCGTGCTTGGAATCGTGGGCTCGCTCTGCCGCGTCAATGTCGCCCTCTACGC CTACCTCATCGTCACGTTCTTCGTCGTCGTGCTGTTCGTCTTCTTCTCCGTCTTCGCGTTCGTCGTCACTGATAGCAGCA AGAGCAAGGTTTCGTCTGAGCACACTGTTGCGGAGTTCTCCACATTGCTGCAACACTATGTCATCAACGAGGGAAACTGG AACGACGTCAAGAGTTGTTTGGTGGACGCGCGCGTCTGCCAGAATCTCGCCGCCGACGTCCACGGTGGTGGCCGGAACAA TGTCTCCGCCGTTTTGAATCACCACTTGTCCGCCACGCAGGTTAGTACTACTTGATCACCTTGTACTTATGTGAAAAAGA GCTATATATTATTAAAATGAAAAGAAAAAAAAATCCTTGCTATAAAACTCAAGAACCCTACAAAAAGGGTCTATGCATAA CAAATAATTTACCAAATTGTGAATAAACATGGTTCTTGAGGCCAAAATTATGGTTTTAGAAACCTCCAAAACCTTAACGT CATGAAGTGGTGACTGAAATCACAGTCGTAGAAATTGATTTAAAATCATGATGACATGACGAGATATATCGAGTTAAGCA TTTTCCTTAACTTTTTTATAGTATAAAAACTGTAATCACAATGACTCAGTTGTGTTGTGGTTCTTTGTATTTGTGAATAA ACAAAAACCTCTAAAACGTTGACGTTGCCGGTGAAAATCACAATGACTTAAACATGACAGTAGGTTGAGAAATTTCGTGT TATTTTAGAATAAAAGAGTTTATTGAAAAACATTTTGAGGAGTTTAAAAAAATGATTACTCTTGACATAGCCTGTTCCCA ATTTTTAATTTTTTTATCTGCGAGTTTTAGTTAGTTAATAGTTGTTTTTTTGCTTTTGTTTTTGTGGAAATAGTTTGGGT GCTGTAGGCCACCGGTGAAGTGTGGTTTCAAAAAGAAGAACGCAACGTTCTGGGAAGTGCCAAAAACAGGTGGAGTAGTA GTGAAGGATTCTGATTGCAGGGCTTGGAATAATAGGCAAGATAAGCTGTGTTATGATTGCAATTCATGCAAAGGAGGAGT GCTTGCCAACATTAGGAACCAGTGGAAACATCTCACTATGTTCAACATTTGTGTTCTTTTACTCCTCACAGTTATATACA TCTTGGGATGTTACGCCATCAGAAACAATCGATCAAACTCCAAGTACCACAGACACAGAGCATACCCTTGATATATATAT AGTTATTGAGCCTGGGAGTTTGACAATCACTATCCCTGTGAAGTGTGAACATCTTTGATTAAGTGCGCTCTACACGCGAC TTGGCAATAAATTGACACTTCACGCATCTTGTAATTGTGTAGTTTGTAACTCATGTATCTTCAACATTATTCATTACATT TAAGCAAAAGTCTCGAGTTCGAGTCTCTGCAGCTGCGTTAAATACAGGGAGAGTGTTACAACCCATAGTGGTCCTATCCG GACCGAAATTGCGAGAGCAATTAAATACACCAGAACATTATTCATTACATAACATCGTTATATTTTAGACATCTGCCTAT GTTCGGCAAGTTGCTGCCGCAAAACCCTTCTCATAACCTTGTTTGATGCCGTCCTTGGAAGAGATGGCACTGACACTACT TGAGAAACCT
CDS sequence (LotjaGi1g1v0207300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCGCATAAGCAACACCATGATTGGAGTCCTCAACATAGTGACCCTATTCGTCTCCCTCACCGCCATGGGCTGCTC CGCCTACATCCACCTCCACCGCACCGACGGCACCGACTGCCAGAAGGTGCTGCAGTACCCTCTCCTATTCGGCGGCCTCT TCATCTTCGTCGTCTCCGTGCTTGGAATCGTGGGCTCGCTCTGCCGCGTCAATGTCGCCCTCTACGCCTACCTCATCGTC ACGTTCTTCGTCGTCGTGCTGTTCGTCTTCTTCTCCGTCTTCGCGTTCGTCGTCACTGATAGCAGCAAGAGCAAGGTTTC GTCTGAGCACACTGTTGCGGAGTTCTCCACATTGCTGCAACACTATGTCATCAACGAGGGAAACTGGAACGACGTCAAGA GTTGTTTGGTGGACGCGCGCGTCTGCCAGAATCTCGCCGCCGACGTCCACGGTGGTGGCCGGAACAATGTCTCCGCCGTT TTGAATCACCACTTGTCCGCCACGCAGTTTGGGTGCTGTAGGCCACCGGTGAAGTGTGGTTTCAAAAAGAAGAACGCAAC GTTCTGGGAAGTGCCAAAAACAGGTGGAGTAGTAGTGAAGGATTCTGATTGCAGGGCTTGGAATAATAGGCAAGATAAGC TGTGTTATGATTGCAATTCATGCAAAGGAGGAGTGCTTGCCAACATTAGGAACCAGTGGAAACATCTCACTATGTTCAAC ATTTGTGTTCTTTTACTCCTCACAGTTATATACATCTTGGGATGTTACGCCATCAGAAACAATCGATCAAACTCCAAGTA CCACAGACACAGAGCATACCCTTGA
Protein sequence (LotjaGi1g1v0207300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRISNTMIGVLNIVTLFVSLTAMGCSAYIHLHRTDGTDCQKVLQYPLLFGGLFIFVVSVLGIVGSLCRVNVALYAYLIV TFFVVVLFVFFSVFAFVVTDSSKSKVSSEHTVAEFSTLLQHYVINEGNWNDVKSCLVDARVCQNLAADVHGGGRNNVSAV LNHHLSATQFGCCRPPVKCGFKKKNATFWEVPKTGGVVVKDSDCRAWNNRQDKLCYDCNSCKGGVLANIRNQWKHLTMFN ICVLLLLTVIYILGCYAIRNNRSNSKYHRHRAYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 270 | 270 | 3.6E-98 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| ProSiteProfiles | 1 | 26 | 26 | 5.0 | – | |
| PANTHER | 1 | 270 | 270 | 3.6E-98 | – | |
| Pfam | 6 | 256 | 251 | 6.5E-22 | ||
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 43 | 11 | - | – | |
| Phobius | 44 | 67 | 24 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 68 | 73 | 6 | - | – | |
| Phobius | 74 | 98 | 25 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 99 | 237 | 139 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 238 | 258 | 21 | - | – | |
| Phobius | 259 | 274 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0207300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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