Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0208400.4

Overview

Field Value
Gene ID LotjaGi1g1v0208400
Transcript ID LotjaGi1g1v0208400.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description signal peptide peptidase; TAIR: AT1G73990.1 signal peptide peptidase; Swiss-Prot: sp|Q9C9C0|SPPA1_ARATH Serine protease SPPA, chloroplastic; TrEMBL-Plants: tr|V7AXS8|V7AXS8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0208400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:45741531..45747247) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGACGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCTCAAGCTATTGTCGCTGAAAGTCTTACCTTAAC TGGTTCAATTGGAGTTGTCACAGGTAAACCAAGGTGTTTTACTTTTTCATTAGGCGAAAAGAGGAGAGCATGTGGATACG ATAATATATCTGAAACTAAAAATATAGATTTATTGATAACAAGAATGCACATGTTGGAATATTTGAAACAGCTGTTCTCA TCTGTTCCATGTGCCAATCTAATTGGTAGTGCTCAATTCAATAATTAGGAAACTCCTAAGCAGGCCCCCAAGCAAAAAAT GACAGAACTAGCATAGACTTAGAGTAGAGTTTGATAGAATAAGGTAAGAAACTTGTATTAGTGAATCGTTAATTCCCAAT GCCCTTGGTAGAAATTTCAAAAATTTCTGAAATTAAGGACATGATTTCTAAAACTCAATTAGTTATGCGACACATGAAAA ATTCATATATAACTTCCTCTCGAGTTCAAAATTTTATTTGAGCTCATTGAAATTCATAATCTCAAAGAAACGACACAATG GAGTTAATTCTAGTGAAATTGTTATATAACACAAAAGTCGATAGGCGTAAATGGAATTATTTTACTACTTTTACTCTAAT TTTCAACATAATACTATAGTATTTTGAAGTTGTTATGATGAAGAAAGATATAACAGTGTATGACTTTGTGTTATAGATTA AATGGGAAATTGTATGCAATCAAAGGAAATTGTAGCTGAAATCAAAATTATTTATTATAGTTGAAATAATTAGGCAAGAC ATTAACCGTGAACCGTCGGTTCTTAATGTTTTGTTCTTCGATTTTGTAGTTTGTTAATTTATAACATAACATCTCTTCTT GTAGGAAAATTTAACCTAGAGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATCATATCAAGAGGAAGATATGCTGA GGTTCTTGCTGCTGAACAACGCCCTTTTAGGTAATACTATTTCTTTATTTTCAGGTATAAAGATTCTAGTAGATCAAGAG AGAATATTAGGCAGTGTAGTATGCCAATGAATATCTCAGTTTCTAGGCACTCCCTTTTTAGAAAGAAGGCATTGCTGTCA CTTTCTAACTAGTAAGTTTCGTGCAATGCATGCCTTTTTTTTAAAGCAAAAGTTGAATTATTATTCAAAGAAGCTGGGGA CAAATCCCCAGATGAGAGATCAAAAGACACAACCTCACCTGATTACAAAACGGAGCACCAGAAAACCACCCCAGAAAGAA CCAACCAGCAAAAAAGTACCAGATAACAAACAGGATCAGAGAAAAAGACAAGTCCCACCAAGATATAATACAAAAGGGAA CCAAAAACCAAAAAGCAGACAAAACAAACCAACTTTCTAAAATTACCCCCAAGAAATATCACCACAAAACTCCATCCCAC AAATAACTCATGATGCTAGCAGGTAAAAGCCTCCCTAAATTCTTCCTCCAACCCATGAATAGCTTCTAAATCTAATATGC CCCAAGATGATTAAAGGGCTGAAAGGAATCGTCTAGGAATTGGTCTTTGCTAGAAAAACTCAGTAAAGAAAGGAAGGTGT TGGTCCTGAAACATGCTAAGGCTGGAATTGGAAAGGAAGGTGTAGGTCTTGATGAAATGGAAGGTGAAGACGTCACACAA AAGAGATGACAATCCTTTGTAAATCAGTTTTCTTGAATCACTCAAGAACCAAGAGAATCACTCTCAAGAATTGAATTTGA AAACTCAGAAAAACTATTATTTATAAACTGATTATTACAATGGTCACATTTGCCTTTTACAGGAGAATTTCCAGCCTAGA GCAAAATATGATTAAGTCTTACAAAGAGAGAATCCTAGGCTGTGTTAACACAAAATAAAAGAAAATTATGGCCCTTTGAC CAGCTCTTGGACGTGTGGAGGCTGAAAGCTTTCCATGTTGAATGTTCTTCATGACTAGGGAACCACACTCTTCATGCCCG TTATTCCCTTTGTCTCTTGTAACTCCTCCTTTAGCCTTGAAAGCTCTTATTTCCTTTGTCTATTGTTGATTCAAATTCAA ACCTTCAGCAGTTGTTCACCTTCAATCCTTCTTGGCGGTCATTGTTGACTAATTCAAACCACACAAAGAGTTTTTAGTGA GAAATGGGCCCCCCTTGGCTCTTATGCTCCCCAAACACCACTAGAGTATATTAAACACACCAAAAGAAAAACAATTCAGA AACTTAGTGCTTTTGGACCCAACTAAATCCATTGGTCACCTGCACTTTTATTCAGTTCAAATAAACTGAAAATACGAGGG CTAGAACCAAAAAGCCCAAAAGGCCCTTTAGCGAGTGCTGGCAACAATTCTTGAAGTTGGAGTCAATTTGGAAGATGTGA CGGTACCAAAGCCCATGATGATCATTCAAGCACAAGAATGGGCCCCAACCCCATTCAACGTCTAAGGGCTTCCATGTTTT TTAGTTTATTTGAATTGAATAAAAGTGCAGGTGACCAATTGATTTAGCTGGGTTCAAAAGCACTAAGTTTCTGAATTGTT TTTCTTTTGGTGTGTTTAATTCACTTTAAGTGGTTTTTGGGGCGCATAAAAGCCAAGGGGTCATTCCTCTCTAAAAACTC TTGGGGTTTGAATAAATCAACAATGGCTGCCAAGAAGGATTGAAGCTGAACAATTGCTGAAAGGTTGAATTTGAATCAGC AATAGACAAAGGAAATAAGAGCTTTTAAGGCTAAAGGAGGAGTTACAAGAGACAAAGGGAATAAAGGGCATGGAGAGCAT TAAATGTGTGGTTCCCTAGTCATGAAGAGCATTCAACATGAAAAGCTTTCAGCCTCCACACACCCAAGAGCTTGCCAATG GGCCATAATTTTCTTTTATTTTGTGTTAATAACACAGCCTAGGATTCTCTCTTTGTGAGACTCAGTCATATTTTGCTCTA GGCTGGAAATTCTGCTTTAAATGGCACATGTGACCGTTGTTCATGAATAATATTGTTTTTCTGAGTTTTCAAATTCAATT CTTGAGAGTAATTTTCTTGGTTCTTGAGTGATTCAAGAAAACTGACTTAGCAAAGGATTGCCATCTCTTGTGTGACAGCT ATACCTTCCATTTCATCAAGACCTACACCTTCCTTTCCAATTCCAGCAGTAGCACGTTTCAGGACCAAAAGCTTCCTTTC TTTTCTGAGTTTTTCTGGCAAAGACCAATTCCTAGACGATCCCTTTCAGCCCTTTAATCATCATGGCGCATACTCAAGTC CCAAAAACTTATCAACTAGCCAAGCCTTTTTAGCTCTAGTAAAATAGCCACAGTGGAATCCACACCTGTAAGCAATGGAG TGGCCACAGACGGAGCACTCCCCTCCTCCGGCATACCCAAATAAGAATGGTATCACAATATCGTTCCAGCCAGTTAATTT ACTAACCAGAAACAAAAACTTCAAGAAAACTCAGAAATCATGCAACATATTCCACAATATGATACAAATGCTATAGAACA AGTACTATGTACCAATTACCCCAATTCAATAAAAAGCCCCAAATTGATCAAACCCTAAAACAGGAACATGCAAGAATATA AGAGATAGGGTTGAAGAAGATCACGCCAGAGATTTATACTGGTTCACCTCCAACAGTTTGGTAGGAGGCTACATCCAGTC CCTGTCATGGCGGTTAGAGTTCACTATGATAAGAATTCAAATACACAGCTCACACCGAGTACTCTTGAATTTCCTAACCC AATACAAACCATGCAAGAACCCTACTTACACCACTCACCACACCCTTTGGTGAACCCAATTCCACGAATTGAATCAAGAT GAAGAATAATTTTCGCAGCAAAGGTGATCTAATTCCCAAAAACTTGAGAGTAGAAAACCATATGAAAAAATACATAGACT CATGATAACTCTTGCTCTCAATCTGAAAATAAAAGTTTGTATATTGTTTTGCTCTTTGCACTAGTGGAAAACCTTCTAAA GAGTGTTAGAAAGCCCATGAAATTTGAGATCAAAGACCCAAGTTTGAGAAAAAACATACAAACAACCCTTTCGCGCACAA GTGCTGAAAACACATGTTTTAAGAACACAGCAGTATGGGTAAATTGATTCACAGCCCGTGTTAATCGATTTACTAAAGTT GAGTTAACAGGATACCAGAACCTGTTAATCTATTAACCAAACTTGCTGTCTTTTCTATGAAAAAACCTTTAAAACTCAAT TTTTAAAGCATTTTTCCTAAGGGTTTCTAATTCTTTTAAGTTTGAAAACATTCCACTATATTAAGAGACACTTAAATAGA GATTAGAGAGCTATTACCATGAAATTTTGATGTGTTCTATGCTAAATGAAAACCTATGCTAGAAAGCATAAAATTGCAAG AATTAAACTAATTATTACAACTTCAAGCTTGAGATTCTTATTCCTTTTTCTTCTTTGTCGGTGTTATCATAAAAACTTAG CCAGAGTCCATGTTGGAGTACTTCTTCACAAATATCACTTAAAGTTCCTCAATATATGAAAGCTGACTGTGGCAAGTAAG TCCACTAAGCAATGAACAATGAACAATCTATTTGACCCTCTAGGAACCATAAGAATAACATAAGGAATCCCAGAGTTTCG GCACCCATCTATGCATTAAATCTTTCAGTAGTTGCCCTTTACAGGGTTGGTATCTATTGTCTCACACTATCCGTACATAT TTGACTTGCGGGACAGACAAATGTGAATATTTTTTAATTTCTTTCTTCATTTTTGGATGTAGACCAGATGAAGCAGCACT ATTTGCCAAATCTGCACAACATGCTTATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCAATGGCTGTATGTTTTA AATTTTATATGCCAATTCCGTGCTTTTTGTTCATTCTTCTTGTAGATCTTTGTTACTTACGATCAAGGTTGTCAGACTCG TGAGTCTAAGCAGACTCGTTTTGGGTAGGTAGACTCGACTCGTAGACTCGACGAGACTCGAGTCTACCAGAAATGAAAAT TTACTAAGTATAACCTTGTCACATGAAGAATAAATACAAACATATAATCTAATTATAAGAGCATCCAAGATTTTTTGAAG CAAAGAAGCAAGAGGAACGCGATAGAGGTTGAAAATAGGTTTAGTTTTAGGGATTTTTAATAAATTTGGGATTTTTTAAC TTAAAAAAAAAAAAAACTTGACTCGGTCACCGAGTCAGACCGAGTCAGGCCGAGTCAGGCCGAGTCAGACCGAGTCAGAC CGAGTCAGGCCAGAAAACGAGTCTGACAGCGAGTCGACTCGTTTTTCCTATGTAGACTCGCGAGTCTAACAACCTTGCTT ACGATTATTATTCTGTAACTAGGTTGATAAGATGGAGGAGGTGGCCCAAGGGAGGGTTTGGACTGGTAAAGATGCAGCTT CACATGGTTTGGTTGATGCTCTTGGTGGGCTTTCACGTGCTATTGCCATAGCGAAATTGAAGGCCAATATTCCTCAAGAC AGTCAGGTTTTTTTCTTAGATCACCTCTATTAGTTTGGCAATACCAATTTTGTTCTTGAGAAGTTCAGTTGTGAAATTAA TGACTGTGCTCGAGTTCTTCCAGGTCACTGTGGTGGAGATCTCCAGAACCAGCCCTTCCCTACCTGGGATTTTGTTAGGC GTAGGGAGTTCCCTCGTAGGAGTGGATAGAACATTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0208400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGACGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCTCAAGCTATTGTCGCTGAAAGTCTTACCTTAAC TGGTTCAATTGGAGTTGTCACAGGAAAATTTAACCTAGAGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATCATAT CAAGAGGAAGATATGCTGAGGTTCTTGCTGCTGAACAACGCCCTTTTAGACCAGATGAAGCAGCACTATTTGCCAAATCT GCACAACATGCTTATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCAATGGCTGTTGATAAGATGGAGGAGGTGGC CCAAGGGAGGGTTTGGACTGGTAAAGATGCAGCTTCACATGGTTTGGTTGATGCTCTTGGTGGGCTTTCACGTGCTATTG CCATAGCGAAATTGAAGGCCAATATTCCTCAAGACAATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0208400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADVAASGGYYMAMGAQAIVAESLTLTGSIGVVTGKFNLEKLYEKIGFNKEIISRGRYAEVLAAEQRPFRPDEAALFAKS AQHAYKQFRDKAALSRSMAVDKMEEVAQGRVWTGKDAASHGLVDALGGLSRAIAIAKLKANIPQDN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.90.226.10
1 140 140 2.7E-53 –
PANTHER
PTHR33209
1 145 145 2.1E-70 –
Pfam
PF01343
1 141 141 3.1E-37
IPR002142
CDD
cd07023
1 137 137 4.54727E-52
IPR002142
SUPERFAMILY
SSF52096
3 128 126 3.25E-17
IPR029045
Gene3D
G3DSA:3.40.1750.10
31 98 68 2.7E-53 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008233
Molecular function Peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0208400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…