Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0218800
Transcript ID	LotjaGi1g1v0218800.1
Lotus japonicus genome version	Gifu v1.2
Description	Nucleosome assembly protein 1-like 1; TAIR: AT1G18800.1 NAP1-related protein 2; Swiss-Prot: sp\|Q8LC68\|NRP2_ARATH NAP1-related protein 2; TrEMBL-Plants: tr\|I3S2R2\|I3S2R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:48460836..48465466) extracted from Lotus japonicus Gifu genome v1.2.

TCTTCCATGGACCAAAAACCAAAAAGGAAATAACGTGCAAGGACGAGTTTAGCCTCCACATCCGACACATGTCATGCTGC ACATTGATGTGTTGTACGAACGACACATATAAACCCCAAAAACCCTAACTATTCACTTCACTATCCCTCTGAACTCGTTC CAACCGAGACTGTGTTAGGGTTTTGCGCTGCGTGAACAACTTCAACAGCAACAACAATGGTGGCCGACAAGACCAAGAAG CAGAAGGTTTCAGAAAAGAGCGAGAATCCTGAGGAAATTGACGGAGACCTTGTCCTCTCCATCGAGAAGTTGCAGGAGAT TCAAGACGAGCTCGAAAAGGTACCTATTTTTTCCACTGCCTCTTTAAGTTTTCAATTTTGAAGCTTTCAATGTGAATTTT ATGCGTGTTCACATTTTCATGCTTTCCCAAATTGATCAAATTGACGTGTTGCTGTTGTTTATTGTGTTGTGGATTGATTT TTGTTTGAATTGTTTGATTTGGATGGGTCCTGTTTTAGATCAATGAGGAGGCTAGTGATAAAGTTCTGGAAATTGAGCAG AAGTACAATGAGATACGGAAGCCGGTGTATGATAAGCGTAGTGATATTATCAAGGCTATTCCTGATTTCTGGTTGACTGC TGTGAGTGTTAAATTTTAATTTTTGATGTAGTTTTTTGTTGATTAAATTCTAGAATTGTGAAATTGTTGTTTTTTATGAT GTTGGAAACCCTTGTTTACTTTGTTTTTGTTATCCTTGTGCAGTTTCTGAGCCATCCTGCTCTTGGCGAACTTCTGAATG ATGAAGATCAGAAGGTTTGGTTTCTTTAGTGACATTCTGCAAAATTTTGGCCTTTACTGTCTCCCTTGGATGGATGTGCT AATTTGCAGCATGTATTTTGGTCCTGTTTTGCCTGTCTTATTTATAACAGCATTTGGAACATAAATTATGTTCTGGTCTA GAAACTGAATGAATCCTATTAAATTCTTAATCATGTGAAGGCTGAAAGCAATTCAGCTTTGATGACAGCTTTTATTTTCA TATTATTTTATTTCTAGGTTAAGTAGTTCAAAGCACTTGTCTGAATCAAGTGTTTTTGCAAGTGTTATCCAATTTGTTTT AGTACTTCATCTGTCTATCCACGTCATGTTTTCACTTTTACACTCTGCTTCTTTATAATTACTTGGGATTGGAATGTTGT TTTGAATGCTCTATGGAAGTACTTCAATTATTGTTGTTCCTTTGGTTACAGACACCTTTTGAGTGATTCTGATTCGTTAC TGATCTTTTCTTTGATAGATATTTAAGTATTTGACTTCTCTTGAGGTTGAAGATTATAAGGATGTCAAGTCAGGCTACTC AATCACCTTCGTAAGTTGCTTTTCATCTTCCCTGGTCCATACTTCATAGAATCCTTAGTATGCTTAATAACCAGTTTTGA AATTGCTTCTTCAGAATTTCAAACCCAATCCATATTTTGAGGATGCTAAGCTTGTTAAGACTTTTACCTTCCTTGAAGAA GGAATAACAAAGGTTACTGCTACACCCATTAAGTGGAAAGAGGGCAAGGTAAGTCTATATATTTCACTTTGTTATTTTCT TTTTCTATCAGCTTGTTCTGTTTATTTTTCTTTGATCTTACAATATGATCCTTAAACCTGAAGGGAATACCCAATGGAGT TGCTCATGAGAAGAAAGGAAACAAGCGGACTCCTGTTGATGTCAGGTTGGTGACTATACATAATCAAGTATTTTTCTCAG AAATGTATTGATAAAAATGCCGTGTTCATGGTTGCGATGTGACTGTCTAACTAGGGTTATTTTGTAATTTGATCAAGTTC AATTGTTTACCACTGGCTCCTTCAGGGAAGCTCAGAAATGTGCTGACCTGATCACGTTAGGCTCTATTAGTGCTAAAGAA TGGTATTGAATTGAATCATCAACAAACGATAAATGAGTGGCTATTGTGCAAGTCAGACAGTTTTAATACTATTTGGCATT GCTTTATCCAGATTGTGTTCTTCTCCCGCCTGTAAAACATCTTCTATGCCTAGCAAAACTTCATGCAATTGCTTTCTGAA TAATTGTTCTCATGTTATTATGTTGAGGAACATAAGCAACTATTTTGTTATTGGTGTTTGGTGAAATTCATTTATGTATG ACCCATATGAAAAATATTCCCTATTTAGGGGGGTCCTCATGGAATTAACCTAGAAATAAAGTGTGTTGGAACTTGCAAAG ACTGCGTTGCTGTCATTTATATATATTCTGTTTTAGTCTAAATCTGGAAATAAGTTCAATTTATGGACAATTGTCAAAGG TCAAAGGTCTTTTTAAATACTTCATGTATTAGAAGTTAATTATTATGTGCTCATGATTGCAGTTTCTTTACTTGGTTTGC TCACACTGAGCAGAAAGATGATATGGATGACATTCATGACGAGGTATCTGTCATTGATTTTGTCTCTCTTTATTAGTCTG ACTTTCTTAGCTTGGTTTCTTTCTGTTACACAAACCCTTTTGTAATATTTCACTCTAAATTGTAGGTTGCAGAGTTGATC AAAGATGATTTTTGGCCGAATCCACTTACCTATTTCAACAATGTAAGTTAACTTCCCTTCCTGTATCTTTTCCTCTGAGT GACTGTTATGGTTTAGCCTTTGTATCATTAATTTTACTCTGCCCTATTGTCTCTTTCCTTGTGTCTCTAACGGTAGTTGA TTACAATTGAACAGGATGAGCCTGATGAAGAGGATGGTGATGAGGATGAAGCTGATGATGAGGTAATTGAAGTTCTGGTT TTGTTTTTTTTTTATTAAAAAACACTGTACAAATTGTTTTAATACTACTATGGAGCATGACAAATTCTGCTAACATGCTG AATATATGTACTAAAAAGCTGTTTATGGTAGTCTGTTTTTGCATGTATTGTGGGTAAGATGGGTATTCAATTAAAATAGG CCAAAAAAGATAAACAGTAAAAGACAATATGGAAGAATGCTCCATTTCTAATGTTACTATGCCAACAACAACCAAACCTT AAACCACTATGGGCCTTGCTAATTGGTTATATGGATGTCATGCGACTTCATCAGAAGTGAAAAAATGCATACTCAACTTA TCTCTCAGATGCATTGATTCCTCTTGTATTTTAATGTTCTCATTCCTTTCGACATTATTATTTTAGTTTCATTTTTTTTT AAATTTGCACCCCTGTGGCTGGAAGAATTCCCCTTTTAGTTTACTCTCTTAAATTACACTTGCAACATCTTTCTATTTCA TTGACCGATGTCCAATTCCATGTATCATGACACTCCCCACAGTTAAAAACACCTTGCAGGATAGATTCAAGATTCTTATA CTGGGTAACTAGTGCTATGATTTCATCCCAATTTTCACCATTAAAGCATTATTGCTAACTTGCATCTGGCCAAAACATCT GTTGCATATACTTTGTCCAAGTTGTAGATAACCAAAAACCCTTAATATCTGTTAACTTCACTCTTTTGCAGGGAAAGGAT GAGGATGACTCTGATGAGGATGACGAGGACCAAGATGATGATGATGACGAGGAGGAGGATGCCTAGGGAGAAGTTCATTG TGACAATCTTACCTTGTTTTCTTTTCTGGGTTATAGGAATATCTAAGTGGTCGTTAGGGGATGATTATAGACATGATCAA GCTTTCTGGTTATCAACTTGTGTCAACAGGTGGAGCTACGAAAGCAAATTTATAGTTTTATCTGTTATGCACTTTCAGAT ACTGATACATCGGTTTTATTTAGTGGTCCTTTTGTCGTGGACTTAAGTAGTAAAATTGCAATGTTTATTGTTGATTGTAT AGCTGTTTGGTATTGGTTAGCTTGTAGGTTTACCATTGGAGGTATTTTTCGAGTGAGCTATGATTATATTCAGCACCATT CCTATGCTATTCCCATCTATATATTACTCCAACAATAACTGTTGAATCGCACCTTTCATCTGTGCATGCAGTAATTTTAG AAAAATTGTTGACTTGCCATAGAAGTAACTCTATGAGCAACATAACTTTACCTGACGAGAGTTTTTTGGTCTTTAGATTG TTGCATATCCAGGCCTAATAAAGGGATATGAAAGAAGACAGGGATATTATGCTCTGCAGCCCTATGCTGAATCCGAATTG GTTGAACAGTCCTGCAATCTCAACAAATGAATAGATGTTTCAGGGAACTCTTGGCATAGTATCATTGATGGCGAAAGAAG GAATTTGATTGGTTGAAATGTTGAATACATCAAGTGAACAAATTGTTTCGCATGTTAAGAGTTCGTTGCTTAAATTAAAA TTAACTATTAAAAATAAAAAAAAACTCGTACTAATTAAAAAAGAAGTGATAACAATTATGAGGTCTTTCAGACATAGGAA GGGGCACTTTGCCCCATGTAGTAGACGCGGATAACCATCTAGTATTTTCTGGTTTAGCTAGTTTTGGTTGTGTGGCTAGG GATCATGAGGTGTTGTGCTTGTTACTGTGGCTTGTGCCCCATGTACATGCACTATCTCCCGTGGTTGCTGAAGCGTTTGC TTGTTGCTGGGCGATGTCTCTTGCGGAGGACCTTGGTTTCCGGTGTATCTATTTAGAGATAGATTGTTTAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGCCGACAAGACCAAGAAGCAGAAGGTTTCAGAAAAGAGCGAGAATCCTGAGGAAATTGACGGAGACCTTGTCCT CTCCATCGAGAAGTTGCAGGAGATTCAAGACGAGCTCGAAAAGATCAATGAGGAGGCTAGTGATAAAGTTCTGGAAATTG AGCAGAAGTACAATGAGATACGGAAGCCGGTGTATGATAAGCGTAGTGATATTATCAAGGCTATTCCTGATTTCTGGTTG ACTGCTTTTCTGAGCCATCCTGCTCTTGGCGAACTTCTGAATGATGAAGATCAGAAGATATTTAAGTATTTGACTTCTCT TGAGGTTGAAGATTATAAGGATGTCAAGTCAGGCTACTCAATCACCTTCAATTTCAAACCCAATCCATATTTTGAGGATG CTAAGCTTGTTAAGACTTTTACCTTCCTTGAAGAAGGAATAACAAAGGTTACTGCTACACCCATTAAGTGGAAAGAGGGC AAGGGAATACCCAATGGAGTTGCTCATGAGAAGAAAGGAAACAAGCGGACTCCTGTTGATGTCAGTTTCTTTACTTGGTT TGCTCACACTGAGCAGAAAGATGATATGGATGACATTCATGACGAGGTTGCAGAGTTGATCAAAGATGATTTTTGGCCGA ATCCACTTACCTATTTCAACAATGATGAGCCTGATGAAGAGGATGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAT GAGGATGACTCTGATGAGGATGACGAGGACCAAGATGATGATGATGACGAGGAGGAGGATGCCTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVADKTKKQKVSEKSENPEEIDGDLVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRSDIIKAIPDFWL TAFLSHPALGELLNDEDQKIFKYLTSLEVEDYKDVKSGYSITFNFKPNPYFEDAKLVKTFTFLEEGITKVTATPIKWKEG KGIPNGVAHEKKGNKRTPVDVSFFTWFAHTEQKDDMDDIHDEVAELIKDDFWPNPLTYFNNDEPDEEDGDEDEADDEGKD EDDSDEDDEDQDDDDDEEEDA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	22	22	-	–
PANTHER	PTHR11875:SF106 View details on PTHR11875:SF106 Search for proteins/transripts with this domain View external data on PTHR11875:SF106	2	248	247	2.7E-115	–
PANTHER	PTHR11875 View details on PTHR11875 Search for proteins/transripts with this domain View external data on PTHR11875	2	248	247	2.7E-115	IPR002164 Show description in modal box View details on IPR002164 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF143113 View details on SSF143113 Search for proteins/transripts with this domain View external data on SSF143113	6	220	215	2.35E-67	IPR037231 Show description in modal box View details on IPR037231 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	25	59	35	-	–
Pfam	PF00956 View details on PF00956 Search for proteins/transripts with this domain View external data on PF00956	29	73	45	7.1E-7	IPR002164 Show description in modal box View details on IPR002164 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00956 View details on PF00956 Search for proteins/transripts with this domain View external data on PF00956	73	220	148	3.4E-28	IPR002164 Show description in modal box View details on IPR002164 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.1120.90 View details on G3DSA:3.30.1120.90 Search for proteins/transripts with this domain View external data on G3DSA:3.30.1120.90	73	223	151	3.2E-52	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	213	261	49	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	221	261	41	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006334 View details of GO:0006334 AmiGO InterPro QuickGO	Biological process	Nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.	Subterm of View details of GO:0034728 View details of GO:0065004 Part of View details of GO:0031497

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0218800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0218800.1