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GO:0006334

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Nucleosome assembly
Full defintion The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of

Relationships

The relationship of GO:0006334 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah

Associated Lotus transcripts 56

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0093109.2
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
GO terms
4
Lj0g3v0217419.1
– HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1|
GO terms
4
Lj0g3v0346119.1
– PREDICTED: protein SET-like [Glycine max] gi|356562830|ref|XP_003549671.1|
GO terms
2
Lj1g3v0487830.1
– PREDICTED: protein SET-like isoform 1 [Glycine max] gi|356516792|ref|XP_003527077.1|
GO terms
2
Lj2g3v0677970.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
GO terms
4
Lj2g3v1705470.1
– PREDICTED: histone H1-like [Cicer arietinum] gi|502161323|ref|XP_004512122.1|
GO terms
4
Lj2g3v1968560.1
–
GO terms
4
Lj2g3v1968560.2
– PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Cicer arietinum] gi|502160644|ref|XP_004511827.1|
GO terms
4
Lj2g3v2560000.1
– High mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1|
GO terms
4
Lj3g3v0323230.1
– PREDICTED: LOW QUALITY PROTEIN: nucleosome assembly protein 1-like 1-like [Glycine max] gi|356550428|ref|XP_003543589.1|
GO terms
2
Lj3g3v0323560.1
– MYB transcription factor MYB107 [Glycine max] gi|351722098|ref|NP_001237744.1|
GO terms
4
Lj3g3v3026740.1
– PREDICTED: protein SET-like [Glycine max] gi|356562830|ref|XP_003549671.1|
GO terms
2
Lj4g3v0630990.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
GO terms
4
Lj4g3v0631000.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
GO terms
4
Lj4g3v0756940.1
– PREDICTED: telomere repeat-binding factor 2-like [Cicer arietinum] gi|502152722|ref|XP_004509061.1|
GO terms
4
Lj4g3v2172590.1
– PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] gi|225444889|ref|XP_002281573.1|
GO terms
2
Lj4g3v2172590.2
– PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] gi|225444889|ref|XP_002281573.1|
GO terms
2
Lj4g3v3114650.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
GO terms
4
Lj5g3v1016990.1
– Histone H1.2 [Arabidopsis thaliana] gi|334184589|ref|NP_001189643.1|
GO terms
4
Lj5g3v1381570.1
–
GO terms
4
Lj5g3v1381580.1
– Histone H1 [Pisum sativum] gi|556345|gb|AAA50303.1|
GO terms
4
Lj5g3v1516750.1
– PREDICTED: telomere repeat-binding factor 4-like isoform X1 [Cicer arietinum] gi|502081399|ref|XP_004486855.1|
GO terms
4
Lj6g3v0423840.1
– HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1|
GO terms
4
Lj6g3v1239550.1
– PREDICTED: nucleosome assembly protein 1-like 1-A-like isoform X2 [Cicer arietinum] gi|502085963|ref|XP_004488064.1|
GO terms
2
Lj6g3v1239550.2
– PREDICTED: nucleosome assembly protein 1-like 1-A-like isoform X2 [Cicer arietinum] gi|502085963|ref|XP_004488064.1|
GO terms
2
Lj6g3v1618130.1
– PREDICTED: telomere repeat-binding factor 1-like [Cicer arietinum] gi|502080243|ref|XP_004486503.1|
GO terms
4
LotjaGi1g1v0092300.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300
GO terms
4
LotjaGi1g1v0218800.1
– Nucleosome assembly protein 1-like 1; TAIR: AT1G18800.1 NAP1-related protein 2; Swiss-Prot: sp|Q8LC68|NRP2_ARATH NAP1-related protein 2; TrEMBL-Plants: tr|I3S2R2|I3S2R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218800
GO terms
2
LotjaGi1g1v0712500_LC.1
– Histone H1; TAIR: AT2G30620.2 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P08283|H1_PEA Histone H1; TrEMBL-Plants: tr|A0A078GVX6|A0A078GVX6_BRANA BnaA04g17710D protein; Found in the gene: LotjaGi1g1v0712500_LC
GO terms
4
LotjaGi2g1v0198500.1
– Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500
GO terms
4
LotjaGi2g1v0260700_LC.1
– Unknown protein; TrEMBL-Plants: tr|J3MXE7|J3MXE7_ORYBR Uncharacterized protein; Found in the gene: LotjaGi2g1v0260700_LC
GO terms
3
LotjaGi2g1v0382800.1
– Histone H1; TAIR: AT2G18050.1 histone H1-3; Swiss-Prot: sp|P40267|H1_SOLPN Histone H1; TrEMBL-Plants: tr|I3S1P0|I3S1P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0382800
GO terms
4
LotjaGi2g1v0410300.1
– MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300
GO terms
4
LotjaGi2g1v0410300.2
– MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300
GO terms
4
LotjaGi3g1v0026700.1
– Nucleosome assembly protein 1-like 1; TAIR: AT2G19480.3 nucleosome assembly protein 1;2; Swiss-Prot: sp|Q70Z18|NAP1B_TOBAC Nucleosome assembly protein 1;2; TrEMBL-Plants: tr|I3SQ70|I3SQ70_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0026700
GO terms
2
LotjaGi3g1v0028200.1
– Telomere repeat-binding factor 4; TAIR: AT1G72740.2 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q6WLH4|SMH3_MAIZE Single myb histone 3; TrEMBL-Plants: tr|I1KG92|I1KG92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0028200
GO terms
4
LotjaGi3g1v0293500_LC.2
– S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT5G55920.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Found in the gene: LotjaGi3g1v0293500_LC
GO terms
3
LotjaGi3g1v0482100_LC.1
– Nucleosome assembly protein 1 2; TAIR: AT1G74560.1 NAP1-related protein 1; Swiss-Prot: sp|Q9CA59|NRP1_ARATH NAP1-related protein 1; TrEMBL-Plants: tr|I3S445|I3S445_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0482100_LC
GO terms
2
LotjaGi3g1v0482100_LC.2
– Testis-specific Y-encoded-like protein 1; TAIR: AT1G74560.1 NAP1-related protein 1; Swiss-Prot: sp|Q9CA59|NRP1_ARATH NAP1-related protein 1; TrEMBL-Plants: tr|I3S445|I3S445_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0482100_LC
GO terms
2
LotjaGi4g1v0078100_LC.1
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.2
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.3
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.4
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.5
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.6
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0078100_LC.7
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
GO terms
4
LotjaGi4g1v0094200.1
– MYB transcription factor; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|K7KPH5|K7KPH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0094200
GO terms
4
LotjaGi4g1v0310600.1
– Nucleosome assembly protein 1-like 1; TAIR: AT2G19480.3 nucleosome assembly protein 1;2; Swiss-Prot: sp|Q70Z17|NAP1C_TOBAC Nucleosome assembly protein 1;3; TrEMBL-Plants: tr|I1MSG1|I1MSG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0310600
GO terms
2
LotjaGi4g1v0463300.1
– Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300
GO terms
4
LotjaGi5g1v0176500_LC.1
– Histone H1; TAIR: AT2G30620.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P26569|H12_ARATH Histone H1.2; TrEMBL-Plants: tr|D7LC70|D7LC70_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0176500_LC
GO terms
4
LotjaGi5g1v0211600_LC.1
– Histone H1; TAIR: AT2G30620.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P26569|H12_ARATH Histone H1.2; TrEMBL-Plants: tr|I1LBM9|I1LBM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211600_LC
GO terms
4
LotjaGi5g1v0229400.1
– Telomere repeat-binding factor 4; TAIR: AT1G72740.2 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5; TrEMBL-Plants: tr|V7APC8|V7APC8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0229400
GO terms
4
LotjaGi6g1v0056500.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0056500
GO terms
4
LotjaGi6g1v0056600.1
– HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600
GO terms
4
LotjaGi6g1v0230600.1
– Nucleosome assembly protein 1-like 1; TAIR: AT5G56950.1 nucleosome assembly protein 1;3; Swiss-Prot: sp|Q70Z18|NAP1B_TOBAC Nucleosome assembly protein 1;2; TrEMBL-Plants: tr|I3SY61|I3SY61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0230600
GO terms
2
LotjaGi6g1v0265800.1
– Telomere repeat binding factor 1; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|A0A1J7HM45|A0A1J7HM45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0265800
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0042025
Cellular component Host cell nucleus 1 1.79