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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0219700 |
| Transcript ID | LotjaGi1g1v0219700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated family protein; TAIR: AT1G74670.1 Gibberellin-regulated family protein; Swiss-Prot: sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6; TrEMBL-Plants: tr|I3SQC0|I3SQC0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0219700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48840592..48847022) extracted from Lotus japonicus Gifu genome v1.2.
AACATAACTATAATAAAATAATACATTGCAGAATCCAAACTCCAATTATCCAATTTGCTTCAAGTTGAGACTCGAGCACT CACTCGACCACCGCATCTATTTATACCCCCACACACCCTCCACATCTGAATCAAACCAAAATCATTTGAAACAACAGGCC CCTACACTTCACTGTTTCTTTTCTCTCTTTGTTTCTCTTCAAGGACAAAGACCATGGCTAAGCTTGTTTGTGTTCTGCTT CTAGCACTCATTGCCATTTCCATGATCGCAACACAGGTACACAAATAAACAATTTACATGTATGAACCATTAATTGTACG TTGTTGCACTGTAATACTCCAAGTCTGAAGAAAACAACAAACCTTCTCTAAATTGGTACTACATTTTTTTTATTTTTCAG GTTATGGCAAAAGAGAATGCTCAGTATCACTTGGACAGTGTGAGTATATATATATATCCTCATTTTCTCTTTGTTTTCAG CATTTTTCCACCTCCCTTGAAGGGTATTTTGCTATTAGAGATATACTATAGACTAGTTAGTTCTAGTCAACTATCCTGTT AGTTGACTAATAGTTAGCAATTATAATAGTCTTTAGGAAAGACTATATATACCAATTGTATCCAACTGTAATTGTTACCA ATTTACATAATAGAATTCAGTTACAACAAACACTCTCTCTCTCTACTCTCTCTCTCTCTACTCTCTCTCTTTTCTGAGTT TGGTTCATCTTCAACATGGTATCAAGAGCATAGTTTCGATCCATAGCCATGGCTGCCAGTGTTTCTACTACTGAACATTC TCTTTCTAAGTCTCTTTCACACAGTATAAGCATCAAGCTTGATGAGAAAAATTTTCTTTCATGGAAGCAGCAGATCGAAG GTGTGATTCGATCTCACAAGCTTCAACGATTCGTTGTCAATCCTGTGATTCCAGATCGGTTTCTTTCCGATGAAGATCGT GCTTCTGACAATGTCAATCCTGCATACTCTGCTTGGGAACAACAAGATTCTGCGTTGTTCACTTGGTTACTGTCATCGCT TTCTGAGTCTCTGCTTCCGATTGTAATCAATTGCAGTCATTCGTATCAGGTTTGGGATGAGATTATTGATTTTCATGAAT CGAAAGCACAAGCTCAGTCAACACAGCTTAGATCTGAGCTCAAATCCATCACCAAAGGTTCGTTGTCTACCTCTGAATAC TTGCGTAAGATCAAGTCGATTGTCAACACGCTGATTTCGATTGGAGATCCTGTTTCCTTTCGTGATCATCTTGATTTTAT TTTCGATGGACTTCCAGAGGATTTCAGTCCTCTGATGACTCTCGTGTTCAATCGTGGAACTCCGTGTTCTATCAATGAAG TTGAATCGATGATCATCAGTCATGAGGCACGACTGGATCGTGTTAAGAAGAAGCACTCGAGTGATTCATTGATTACAGCG AATGTTGCGCAAGCCAGTGTTGGATCCTCAAATCACTCCGCTGCCTCTTCGCCAGCGCAATCTTCTGCGAATTCGTATGA TACTCAAAATTCGAATTCTGGTGATTGCTCTAGTGGTGATTACCAAGGGGATTATCGCAGCGGTGGTGATTATCGTGGTG GTCGCGGCGGTGGCCGCAATGGTGGTCGTGGACGCGGTCGTAAAGGACGGGATTCTTCGGTTCAGTGCCAGATTTGCTCG AAATATGGCCATGATGCCTCTATATGCTATCACAGGAATACTTCTGGTTTCTTTTCACCATATGGCACTCCTCAGAATGG TGGTTTTGCACCTCAGTATGGCTTTTCTGGTGCAATGCCTCAGTTTGGGTTTCCTGGATTTGGTGCTATGCCTAGTTATC CTTCAATGGCTGGTTTTCCTTCCATGCCTGGGTTTGGTCTTCCTGGTAGACCTACTGCATCTTCCTGGTATTCTCAGCAG TTTTTCCCTGGTGGCTATGCACCTTCCAGTTCACATCTACAGCAAAGTTTTCAATCTGGTTGGAACTCTCAAAGAGCCCT TCATCCTCCTCAACCATCACACTCTCAAAGACCACCACAGTCTTATCTTGTAGGCCCTATAGCTTCTTCCGATACCAGCT CAGTGTTAGGACCAGCACCTCAGGGATTGCTTGCAGGGTCCAACTCTCTTCAAGGAGCAGGAAACTGGTATCCTGACTCT GGGGCTACTCACCACATTACCAATGACTCTACTCTATTCTCAGACAGCAATTCGGTTGCCAGCAATGACCATGTCCTCAT GGGCAATGGTCAAGGTGTGTCTATTCATTCCATTGGCACAGCTAAGCTCAATTCCCCTATACAACCTCACACTACTTTAA CACTTAGAAAACTGCTTTTGGTTCCTACAATCACAAAGAACCTTGTTAGTGTGAGCAAGTTTGCAAAAGATAATGGCGTC TTTTTTGAGTTCTGGCCAACTGACTGTTTTGTGAAATCCCAGGACAATTCTGATTTGCTCCTTCAAGGCAAGCTTGGCAG TGATGGACTTTACAGCTTTGAAGATTTTCAACCTGCTCAAGCTTCCTCTACTGCTGATAAGCATTCTTCTTCTACAACTC CCTTAGTTTCTGTTTCTACTTTACAATCAAATAAAGAGCCAGTGCAACCTGTTAGTCCAGCACCTGCTCCTACTTCTTAT GACCTGTGGCACAGTAGGTTTGGGCATCCTCACTATGAGGCACTCAAACATGCCCTCATACAAAGTAGTATAGCTGTTCC ATCTAAGCCTACTAATACTGTGTGTGCTGCTTGTTGCCTTGGAAAGTCTCATAGACTTCCTTCACACACTTCTACAACAG TTTATTCCTTTCCTCTTCAGCTAGTGTTTATAGACCTGTGGGGACCAGCTTCTGTTCAATCATCCTGTGGTTATCATTAC TTCTTAACATGTGTCGATGCCTATTCTAAGTACACTTGGATTTATCCTCTGAAGGTCAAATCAGAAGCTTACACTGTCTT TACACAGTTTAAAGCAATGGCAGAACTGCAACATGGTCACAAAATTAAAGCTGTGCAGAGTGACTGGGGTGGTGAATTTA GGCCTCTCACTAAATTCTTTGCTGATCATGGTATTAATCATCGAGTTACCTGTCCACATACTCATCATCAAAATGGAACT GTTGAAAGAAAGCATAGACAAATAGTTGAGGTTGGCCTCACTTTGCTTGCTCATGCTAAGCTTCCAATGCAGTACTGGGA TCATAGTTTCTTGACTGCTGCTTATCTTATCAACAGAACTCCAACTTCAGTTCTTGCCAATGCTAGTCCTTATAGCAAAC TTTACAATCAAACTTATGACTGCAAGTTTCTCAAAGTTTTTGGATGTGCTTGCTATCCTTTCATCAGACCTTATCACAAC ATCAAGCTGGCATACAGATCTAAAGAATGCATTTTCCTGGGTTATTCCTCAAACCACAAGGGCTATAAGTGCTTGGATAG CACAGGCAGGATTTACATTTCTAAGGATGTTGTGTTCAATGAAGAGAGGTTTCCCTATACAGAGTTGTTTCCTCCTCAGT CTCTGAGTTCTTCTGTGCAGACTCCAATTCCAGCTCACATTCCTCTTTTCCCTGCACCAACACAACAGCAAACTCCTCCT GGCTTTCATCTTGGTAGTCCTGCATCAGAAGCAGCATCTTCCACCAATACACTACCTTCTCAACAAGCTTCTTTACACGG TGATATCCCTGTAGTGGAATCTCCTGCAGTCTCTTCCACTGTGCAAGCACAACTTCCAGCACCTCCAGTCAACACTCATG CTATGACAACAAGGGCAAAATCTGGGATAGTGAAACCACGGCTGTTTCCTACTCTTTTACTTACTCAAGCAGAACCAAAA ACTGCTAAGCAAGCTCTGAAAGATCCTAAATGGATGAAGGCCATGCAGCAAGAGTATGATGCTCTTCTCTCTAATCACAC TTGGTCTCTAGTTCCTCTTCCGCATGGACGAAAATCCATAGGCTGTAAATGGGTATTTCGGGTCAAAGAGAATGCTGATG GGTCCATTGATAGGTACAAGGCCAGATTGGTGGCCAAAGGCTTTAATCAAAGGCCAGGCATAGATTACAATGAAACTTTC TCTCCGGTTGTCAAGCCTACAACAATTCGAATTGTTCTTACCTTGGCTGTCACTCATGGCTGGCACATCCAACAACTAGA TGTGAATAATGCTTTTCTTAATGGCTTCTTGGATGAGGAAGTGTACATGCAGCAGCCCCCTGGTTTTGAAAGTCAGGACA AGACCTTGGTTTGTAAGTTACAAAGATCTTTGTATGGTCTCAAACAGGCCCCAAGGGCTTGGTTTGAGAGACTCAAGGCT GCCTTACAGAAATATGGATTCAAGTCCAGTAGGTGTGATCCTTCATTGTTCACTTACTCTTCTGGTCATGATAGGGTCTA TCTACTTGTATATGTCGATGATATCATTGTTACTGGCTCCTCTATTCCTTTGATTCAGCAGTTGGTTCAGAAGCTTCATC AAGACTTTGCTTTAAAGCAATTGGGTGATCTTGACTACTTCTTAGGCATCCAAGTTCAGAGGTTAAAGGATGGTTCTCTC ATTCTTTCTCAGACCAAGTACATTTATGATCTTCTTGAGAGGGCTAACATGGCTGAAGCAAAGGGAATATCAACTCCAAT GGTTAGTTCAACTAGATTAACCAAGTATGGGGCCAATTACTTGACGGATCCTACTCTGTACAGGTCCATAGTTGGGGCCT TGCAATATGCAACCCTCACTAGACCTGAGATTAGTTTTTCAGTAAACAAAGTCTGTCAGTTTCTCTCCCAGCCTCTTGAA GAGCACTGGGCAGCAGTGAAGCGAATCCTTAGGTACCTCAAAGGGACTGCTAATCATGGTTTGTTACTGCAGAAGGGTTT TAAGCACAAACCTATGCCTCTCGAGGCCTACTGTGATGCTGATTGGGCATCTGATCCCGATGACCGGAGATCTACTTCTG GTTTTGGCATTTTCTTTGGTCCAAACCTAGTTAGCTGGAGTTCTAAGAAGCAAACTCTTGTTGCTCGCTCCAGCACAGAA GCTGAGTATCGAAGCTTGGCAAATACCACCTCTGAAATTCTCTGGATTCAGTCCTTACTTCAAGAACTGCAGATTCCTTA TCACACTCCTCATGTCTACTGTGACAATATGAGTGCTGTGGCTCTTACTCACAATCCTGTCCTCCATGCTAGGACCAAGC ATATGGAGTTAGACATCTTTTTTGTTAGAGATAAAGTTCTTAACAAAAGTCTCATTGTCACTCATGTTCCCTCCTTGGAT CAGGTTGCTGACATCTTTACCAAAGCCTTATCACCCACAAGATTTGCTGCTTTGGCTTCCAATCTCAAGGTTGTTGACAA GTTCTCCCTTCATCACCCACCTTGAGCTTGCGGGGGTGTATTAGAGATATACTATAGACTAGTTAGTTCTAGTCAACTAT CCTGTTAGTTGACTAATAGTTAGCAATTATAATAGTCTTTAGGAAAGACTATATATACCAATTGTATCCAACTGTAATTG TTACCAATTTACATAATAGAATTCAGTTACAACAAACACTCTCTCTCTCTACTCTCTCTCTCTCTACTCTCTCTCTTTTC TGAGTTTGGTTCATCTTCAACATTTGCAAAGGTCACACTCATTCTGAAAATTAATATCTTGATTGAATTTTTTCTTCCAT TCAATTTCAGGGGAATTATGGACCAGGGAGTCTAAAGAGCAATGGTGAGTGATCTTTACTCAGTACTACATGAGTACATG TTTGTACATTAAGTAGTAGTTGTGCATCATGAACCTTGAATTTGTGAATTGAATGTAATCCAAGGTTTTAATATATTTGT TTGTGAATTAATTTGGTTTGATTTAACCTGCAGAGTGCCCATCACAATGCACTAGAAGATGTGCACAGACACAATATCAC AAGCCCTGCATGTTCTTCTGCCAAAAATGCTGTGCCAAGTGTTTGTGTGTCCCTCCTGGCTACTATGGGAACAAGTCTGT GTGCCCCTGCTACAACAACTGGAAGACCAAGCGTGGAGGACCCAAATGCCCTTGAATGATTTCCCACAGTTCAAACTTAA TTAATTTTATATTAATTATATTACTCAAAGAAGTGGAGCTATATAGCCACAGATATTTCTACTTGGGGGTAGCACACCTA CTGCAGTTGGATCATCACTATGACTATAACCATCATGTTCCCTGCAATGAAATTAATTATATCGTTAATTTTGCTATAGG AAACCTGTATTGATATATTTGAACCCCTCTTCCTAAACAAGCAACAGAGGGCTCTTCATATAATTAATTAATTAATAAAT TGTCTTAATTTCTCACTTGTCCTAATTACCTTGTTGTATAATATAATAATCTCTTTTCCGTAATTTTAGTTTGTTGTTTG GAGTCACGACATGTCTTATAGTAGTTTAACT
CDS sequence (LotjaGi1g1v0219700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGCTTGTTTGTGTTCTGCTTCTAGCACTCATTGCCATTTCCATGATCGCAACACAGGTTATGGCAAAAGAGAA TGCTCAGTATCACTTGGACAGTGGGAATTATGGACCAGGGAGTCTAAAGAGCAATGAGTGCCCATCACAATGCACTAGAA GATGTGCACAGACACAATATCACAAGCCCTGCATGTTCTTCTGCCAAAAATGCTGTGCCAAGTGTTTGTGTGTCCCTCCT GGCTACTATGGGAACAAGTCTGTGTGCCCCTGCTACAACAACTGGAAGACCAAGCGTGGAGGACCCAAATGCCCTTGA
Protein sequence (LotjaGi1g1v0219700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKLVCVLLLALIAISMIATQVMAKENAQYHLDSGNYGPGSLKSNECPSQCTRRCAQTQYHKPCMFFCQKCCAKCLCVPP GYYGNKSVCPCYNNWKTKRGGPKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 105 | 104 | 1.3E-53 | – | |
| PANTHER | 2 | 105 | 104 | 1.3E-53 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 105 | 81 | - | – | |
| Pfam | 46 | 105 | 60 | 3.2E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0219700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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