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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0220800 |
| Transcript ID | LotjaGi1g1v0220800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A0B2NXU5|A0A0B2NXU5_GLYSO Dof zinc finger protein DOF3.3; Found in the gene: LotjaGi1g1v0220800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:49066214..49070018) extracted from Lotus japonicus Gifu genome v1.2.
CCGCCAATCCCGGTATAGATGAAGTTGGAACAGAAAGAAAGAAAGACCGTAAAAGTAAAAAGTTCAACTCAAAAACAGCC CCAAAGCTGAGTGCAGGGAAAGTGTGTGCAACGAGCAGACAGAGAATCAAATCTAATAAATAGAAAAAGCGTTTGTGAAA AAAGAAAATCTATTACAGGCCACAAGAACTTGTGGCTAGGAAATCGAGACCCCAGCTGACGTGGCACCCCTCTCTCGGTT TAAACGGATCAAAATTCCACTCGTCAATGCTTCCATTGCCAACTGAGACCAAAAACCCAAACAAAACTGAAACACTCAAA ACACGCTCGCTTGCAGTTACGAACCACCTGAAACCGCCGCAACCGTCTTCCGCATTTCTCGCAACCGTCTCCCGCGTTTT CCGCAACCGTCTCCGCGTTTTCCGCGCACTCTGTTTGGATCCCGAGAAAATGCAGGAAATGAAGGATCCTGCCATCAGGC TTTTCGGCCAGAAGATTCGCTTTACCGGGGAGGAAGCAGAGGCTGCTGCCGTTGCCGCCGCCGGGAAAATTACCTCCACG GCGGCGGCGATTGATGTTGACAAAGAGGAAGAAGAAGAAGATGATGTCGATAGGTCAGAGCCTGAAATTGATAAAGTAGA CCAAGGAGATAAGGTACAGTTTGTTATATGATTCAGGAGACAAGGAACGTGTTTTTCTGGCACTTAATGCTAAAACAATT GATGTGTCAATTTTACTTAATTTTTTTTTTCTTCCTTTGATTGCATAATTGTTTTGCTTCCTTCTGCCAAATTTCCCTAA CTTTTCAAAAAAAAATCCTGTATTTAGCTTTTACTTGAATTTCAATGTTTTGAATTGTTGAAAATTGTTACTTCACATGT TTTACTGTTGTGAATTTTTATGTGTGGGATCTGGAACTTCAGAAACAGAGTGATTGAAGCAGAGAGTGGATTAAAACAAA CCATGTTTTGCTTCAAGTAGTCAAAATAACTAAATTAGCTATTGTGACCTGCTTGCCATGTTTACGACTAATGGAAGTCA AGTGTTTTTGTTTCTATTTTTATTTTTTGAAGTTTCAAACTTTCAATTAAACAATTTTTCATTTTTAGTATTGGTTAAAT TTCAAGCTTTTATACTAAACAATTTCAACCAAATCAAATATGGCTCAACAACCTGGGTTTTCATTTTTACATCAGTTGTT CTTCTGTTGTTTTCATTAACTAACTGGTCCTCATTTTAATCAAACCTTTATGTTTATACTTTATAGTCTGTGTGACTCCA AAGTTTTAACTTCTAAGTTGGAGCAGAATATTAATTTTCCCTTTAAATTTTTCTTCATCCTATCTTCTATAGTACAATTT GGACTAGAAAAATTGTGAATCTGGATTTACATGATTGGTGTTATTCTTGTGTATGTGTTTCATTGATTAATTGAAAACAT TCTGTCAAATTATTAGGATCCTCCAGCTGAAAAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTCCTCCAAATACAGTTG CAGAGACCAAGGATATTCAGAACCCAAAAACACCTCCCATAGATGAAGAAACTGCAAATTCAGAAACGGGTAAATCGGAG AACGATCAAAATGATGAAAACAACAACATCAACTCTGACGACAAAACACTTAAGAAGCCAGATAAGCTTCTCCCGTGTCC ACGCTGCAAGAGCATGGACACCAAATTCTGTTACTACAACAACTACAACGTGAACCAGCCACGCTATTTCTGCAAAGCGT GTCAGAGATACTGGACTGCCGGTGGCACCATGAGGAATGTGCCGGTCGGGGCCGGGAGGCGAAAGAACAAGAACTCTTCC TCGCATTATCGCCACATAACAATCTCGGAGGCTCTTCAAGCGGCTAGAATTGGTGCTGCTAATGGAACTCACCATGCACT GAAATCCAATGGTAGAGTTCTCAGCTTTGGAATTGACCCTCCGATCTGTGATTCAGTGGCATCTGTGTTGAACCTTGGAG ATTCGAAAAAGGCTCTTAGCGGCACAAGAAACAGGTTTCATAATCATACTAGTGAAGAGCAGAAAATTCCTGTTAGTGGG GAAAATGGCGAGGACTGCTCATCTTCAATCACGGTCTCAAATTCCATGGAGGAAACCGGGAAAAGCACAATCCAAGAAAC ATTTCTACCAAACAATGGTTTCGTTCCTCAACAAGTTCAATGCTTTTCTAGTGTTCCTTGGCCTTATCCGTGGGGTTCTG GAGTTCCCTCACAACCACAACCCGCTTTGTGTCCTCCAGGGTTTTTCTACCCTGCCGCTCCTATGTGGAATTGGAGTGTT CCTTGGTTTTCATCTCACACTTCTGCTCCAAACCAGATGTCCCCTAGCTCCGGGTCAAATTCTCCAACCCTTGGAAAACA CTCGAGGAATGATGATGACATGGTTAAAGAACAAGATCTTCAGCAGCAAGAAGAAGAATCATCACAAAGGCACAGAAACG GGTGTGTCTTGGTTCCCAAAACCTTGAGAATTGATGACCCGGATGAAGCTGCTAAGAGTTCTATATGGGCCACTCTTGGA ATCAAGAATGAATGTGTGAATGTGAGTGGTGGAGGAATGTTCAAGGCCTTCCAATCAAAAAAGAAGGAAGAAAAAAATCA TGTTTTGGAAACATCTTCAGTGTTGCTGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACACCTGAA TTAGCAACCCTTTGAGACCTTAATGAGTCTTGCATTGTGTCTCAGATGTTGTGAGAAAGAGACACTGAGACAATGACCAT CTTTCATCAAATGTGCATTTGATTAGGCCTTGGAATGAAGTGAAGGTTGGTAGTCTCTGATTTCCTCAGCACAAGTAGGG GGAAACTAATCTACTAGCAGTTTTGTTGGGATGCTGGGAACTGTTTTTGTCTTCCTTTCCATGTACACTATAAATAGGTG CCGTTTAATGTGTTCAGTTTGTTAAGTTTGAGTTGATGTACATATAGACATATGTGAAAATGCTCTGCCAAAGAGGGTAA AGATCTTTGCGATGTATATAAACATTGAGGTGCTGAATTATCTTGTGAAAAAAGGAAAACAGAACTTCCTTTCTTTTAGG TTATTTATGTATTTTGTGGATAGTTCACCATTTCTCTGAATCTTTTAAAAAAGATTTGGTAAAGTATGAATCTGAATCAG AAGTGGCATCTGCTTTTTCGAAATATAAGAAAAAAGAACTTGAATATAACCGACCACAAAAAATGCAATGCGAAAGGAAA TGTGGATACTCTATTCATAGTCATATCTCTCAACCATTTTGGTCGAAAAGAAAAAGGAAGTGATTACAAGTTTCACATTG ATTAGAGGTATGATTGAAATAGTAATTATAAAGGTTAGAATAACCCTCAAATCATATTATAATAGGAGGGGATGAATTTT TTTATGAAGTTCTATTACCTTTCTCCCTCACTTCACTCCACTTTGTCACCTTTCCACCGTCGCGGAGGAGCCGCCGCCAT GTGACCTTGGCAGAGGCCAACGTGACCACCGCTATGGGTCGGAGGATGAGCGCCGGAATGATCTCGATGAGCTTCAACGT GAAGAGTTCTTCGAGGGACTGAACCAGGTCAACAAGCTTGTCGAGGAAACCACCTCTGAACCCCTAGTCAACCCTGGATG GGCCATGAACCTCCAAATTTGCTACCTCATCAACTGCGGCAAGGTCATGGAGCTCGGATATAACTACTGTGCTAATTGTG GGATTATAGTGGAATCGAAGAAACTTTCACTAAGCCCCTCTTTGC
CDS sequence (LotjaGi1g1v0220800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCATTGCCAACTGAGACCAAAAACCCAAACAAAACTGAAACACTCAAAACACGCTCGCTTGCAGTTACGAACCA CCTGAAACCGCCGCAACCGTCTTCCGCATTTCTCGCAACCGTCTCCCGCGTTTTCCGCAACCGTCTCCGCGTTTTCCGCG CACTCTGTTTGGATCCCGAGAAAATGCAGGAAATGAAGGATCCTGCCATCAGGCTTTTCGGCCAGAAGATTCGCTTTACC GGGGAGGAAGCAGAGGCTGCTGCCGTTGCCGCCGCCGGGAAAATTACCTCCACGGCGGCGGCGATTGATGTTGACAAAGA GGAAGAAGAAGAAGATGATGTCGATAGGTCAGAGCCTGAAATTGATAAAGTAGACCAAGGAGATAAGGATCCTCCAGCTG AAAAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTCCTCCAAATACAGTTGCAGAGACCAAGGATATTCAGAACCCAAAA ACACCTCCCATAGATGAAGAAACTGCAAATTCAGAAACGGGTAAATCGGAGAACGATCAAAATGATGAAAACAACAACAT CAACTCTGACGACAAAACACTTAAGAAGCCAGATAAGCTTCTCCCGTGTCCACGCTGCAAGAGCATGGACACCAAATTCT GTTACTACAACAACTACAACGTGAACCAGCCACGCTATTTCTGCAAAGCGTGTCAGAGATACTGGACTGCCGGTGGCACC ATGAGGAATGTGCCGGTCGGGGCCGGGAGGCGAAAGAACAAGAACTCTTCCTCGCATTATCGCCACATAACAATCTCGGA GGCTCTTCAAGCGGCTAGAATTGGTGCTGCTAATGGAACTCACCATGCACTGAAATCCAATGGTAGAGTTCTCAGCTTTG GAATTGACCCTCCGATCTGTGATTCAGTGGCATCTGTGTTGAACCTTGGAGATTCGAAAAAGGCTCTTAGCGGCACAAGA AACAGGTTTCATAATCATACTAGTGAAGAGCAGAAAATTCCTGTTAGTGGGGAAAATGGCGAGGACTGCTCATCTTCAAT CACGGTCTCAAATTCCATGGAGGAAACCGGGAAAAGCACAATCCAAGAAACATTTCTACCAAACAATGGTTTCGTTCCTC AACAAGTTCAATGCTTTTCTAGTGTTCCTTGGCCTTATCCGTGGGGTTCTGGAGTTCCCTCACAACCACAACCCGCTTTG TGTCCTCCAGGGTTTTTCTACCCTGCCGCTCCTATGTGGAATTGGAGTGTTCCTTGGTTTTCATCTCACACTTCTGCTCC AAACCAGATGTCCCCTAGCTCCGGGTCAAATTCTCCAACCCTTGGAAAACACTCGAGGAATGATGATGACATGGTTAAAG AACAAGATCTTCAGCAGCAAGAAGAAGAATCATCACAAAGGCACAGAAACGGGTGTGTCTTGGTTCCCAAAACCTTGAGA ATTGATGACCCGGATGAAGCTGCTAAGAGTTCTATATGGGCCACTCTTGGAATCAAGAATGAATGTGTGAATGTGAGTGG TGGAGGAATGTTCAAGGCCTTCCAATCAAAAAAGAAGGAAGAAAAAAATCATGTTTTGGAAACATCTTCAGTGTTGCTGG CTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACACCTGA
Protein sequence (LotjaGi1g1v0220800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPLPTETKNPNKTETLKTRSLAVTNHLKPPQPSSAFLATVSRVFRNRLRVFRALCLDPEKMQEMKDPAIRLFGQKIRFT GEEAEAAAVAAAGKITSTAAAIDVDKEEEEEDDVDRSEPEIDKVDQGDKDPPAEKVTEKKKEADPPPNTVAETKDIQNPK TPPIDEETANSETGKSENDQNDENNNINSDDKTLKKPDKLLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGT MRNVPVGAGRRKNKNSSSHYRHITISEALQAARIGAANGTHHALKSNGRVLSFGIDPPICDSVASVLNLGDSKKALSGTR NRFHNHTSEEQKIPVSGENGEDCSSSITVSNSMEETGKSTIQETFLPNNGFVPQQVQCFSSVPWPYPWGSGVPSQPQPAL CPPGFFYPAAPMWNWSVPWFSSHTSAPNQMSPSSGSNSPTLGKHSRNDDDMVKEQDLQQQEEESSQRHRNGCVLVPKTLR IDDPDEAAKSSIWATLGIKNECVNVSGGGMFKAFQSKKKEEKNHVLETSSVLLANPAALSRSLNFHENT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 62 | 548 | 487 | 2.9E-165 | – | |
| PANTHER | 62 | 548 | 487 | 2.9E-165 | – | |
| MobiDBLite | 101 | 201 | 101 | - | – | |
| MobiDBLite | 104 | 118 | 15 | - | – | |
| MobiDBLite | 119 | 148 | 30 | - | – | |
| MobiDBLite | 170 | 201 | 32 | - | – | |
| Pfam | 199 | 255 | 57 | 5.2E-32 | ||
| ProSiteProfiles | 201 | 255 | 55 | 28.537 | ||
| ProSitePatterns | 203 | 239 | 37 | - | ||
| MobiDBLite | 424 | 442 | 19 | - | – | |
| MobiDBLite | 424 | 471 | 48 | - | – | |
| MobiDBLite | 443 | 468 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0220800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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